BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg485901 Length=784 Score E Sequences producing significant alignments: (Bits) Value AT3G54880.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1236 0.0 > AT3G54880.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25360.2); Has 137 Blast hits to 137 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr3:20336856-20338522 REVERSE LENGTH=815 Length=815 Score = 1236 bits (669), Expect = 0.0 Identities = 752/791 (95%), Gaps = 10/791 (1%) Strand=Plus/Plus Query 1 GTTGATTTTTCATTGACTACTCAAGATCTAAAATTTTCTTTTACATATAAAACCTAAAAG 60 ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1 GTTGATTTTTCATTGCCTACTCAAGATCTAAAATTTTCCTTTACATATAAAACCTAAAAG 60 Query 61 AAAACATATAAAGCAGTTTCAATCCCTCCACCAAATTTTCTGCTGATACTTTCCCCATTA 120 ||||||||||| |||||||||||||||| ||||||||||||| ||||||||||| ||||| Sbjct 61 AAAACATATAATGCAGTTTCAATCCCTCTACCAAATTTTCTGTTGATACTTTCCTCATTA 120 Query 121 AGGGTTTTCCACA-AGCTGGTTGATG-AAATTTCTTTAGCAGCTTTTGTGGAAACCTTTG 178 ||||||||||||| ||||| |||||| |||| || | | ||||| |||||||||||||| Sbjct 121 AGGGTTTTCCACATAGCTGATTGATGAAAATGTCAAT-G-AGCTTGTGTGGAAACCTTTG 178 Query 179 ATG---TTTTGTATGTGGATGTGAATTGGTATAAATCGGGTTTATTCGAAAAGGAATGAT 235 ||| |||||||||||||||||||||||||| | ||||||||||||| ||||||||||| Sbjct 179 ATGTTTTTTTGTATGTGGATGTGAATTGGTAT-ACTCGGGTTTATTCGTAAAGGAATGAT 237 Query 236 CATTCGATCGAATAAGAATGGAGCTTTATACTGCAAATTGTCTGTCCACCGAAAACAAAC 295 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 238 CATTCGATTGAATAAGAATGGAGCTTTATACTGCAAATTGTCTGTCCACCGAAAACAAAC 297 Query 296 CTACTCTTGAGCTTTCAAAATTAGTCAAAGAAGAGAAAAGCTCGGTGAAAACGAACAGCG 355 |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| Sbjct 298 CTACTCTTGAGCTTTCAAAACTAGTCAAAGACGAGAAAAGCTCGGTGAAAACGAACAGCG 357 Query 356 AAAACACCTTTACACTTGTGAATCATGGTGCAAAGATGTGGCAAGAGAACAGGGAAAAAT 415 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 358 AAAACACCCTTACACTTGTGAATCATGGTGCAAAGATGTGGCAAGAGAACAGGGAAAAAT 417 Query 416 GGGTGGGAGATCAATCTGGACAAAGAAAAAACACTGCAAAGGATCAGATAATAAGCTGGT 475 ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| Sbjct 418 GGGTGGGAGATCAATCTCGACAAAGAAAAAACACTGCAAAGGATCAGATTATAAGCTGGT 477 Query 476 CTACTACATATGAAGATCTTCTCTCAACTCATGAACCTTTCTCTGAGTCGATTCCTTTAC 535 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 478 CTACTACATATGAAGATCTTCTCTCAACTCATGAACCTTTCTCTGAGTCGATTCCTTTAC 537 Query 536 CCGAGATGGTGGACTTTCTGGTCGATATTTGGTACGATGAAGGCCTTTACGATTAGAAGA 595 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 538 CCGAGATGGTGGACTTTCTTGTCGATATTTGGTACGATGAAGGCCTTTACGATTAGAAGA 597 Query 596 ATCTAACAATGCCACGAACTAGATTGACAAAGAACAAAGGACAAATTCAATTATGGTATG 655 ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct 598 ATCTAACAATGCCACGAACTAGATTGACAAAGAACAAAGGAGAGATTCAATTATGGTATG 657 Query 656 AAGTTAAATCTTTAGGAGTTGTGAAAACATCTACAGATATGATGAACTATCTACTTGTTA 715 || ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| Sbjct 658 AAATTAAATCTTTAGGAGTTGTGAAAACATTTACAGATATGATGAACTATCTATTTGTTA 717 Query 716 TATCCATATACTGTATCTTGAGAAAAAGACTGACCACTCACATACTCCA--TCTTTAACA 773 ||||||||||||||||| |||||||||||||||| ||||| |||||||| ||||||||| Sbjct 718 TATCCATATACTGTATCATGAGAAAAAGACTGACTACTCATATACTCCACATCTTTAACA 777 Query 774 TTTATATAATT 784 ||||||| ||| Sbjct 778 TTTATATGATT 788 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38127717573 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5