BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485901
Length=784
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54880.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1236 0.0
> AT3G54880.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G25360.2);
Has 137 Blast hits to 137 proteins in 19 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 136; Viruses
- 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr3:20336856-20338522
REVERSE LENGTH=815
Length=815
Score = 1236 bits (669), Expect = 0.0
Identities = 752/791 (95%), Gaps = 10/791 (1%)
Strand=Plus/Plus
Query 1 GTTGATTTTTCATTGACTACTCAAGATCTAAAATTTTCTTTTACATATAAAACCTAAAAG 60
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 GTTGATTTTTCATTGCCTACTCAAGATCTAAAATTTTCCTTTACATATAAAACCTAAAAG 60
Query 61 AAAACATATAAAGCAGTTTCAATCCCTCCACCAAATTTTCTGCTGATACTTTCCCCATTA 120
||||||||||| |||||||||||||||| ||||||||||||| ||||||||||| |||||
Sbjct 61 AAAACATATAATGCAGTTTCAATCCCTCTACCAAATTTTCTGTTGATACTTTCCTCATTA 120
Query 121 AGGGTTTTCCACA-AGCTGGTTGATG-AAATTTCTTTAGCAGCTTTTGTGGAAACCTTTG 178
||||||||||||| ||||| |||||| |||| || | | ||||| ||||||||||||||
Sbjct 121 AGGGTTTTCCACATAGCTGATTGATGAAAATGTCAAT-G-AGCTTGTGTGGAAACCTTTG 178
Query 179 ATG---TTTTGTATGTGGATGTGAATTGGTATAAATCGGGTTTATTCGAAAAGGAATGAT 235
||| |||||||||||||||||||||||||| | ||||||||||||| |||||||||||
Sbjct 179 ATGTTTTTTTGTATGTGGATGTGAATTGGTAT-ACTCGGGTTTATTCGTAAAGGAATGAT 237
Query 236 CATTCGATCGAATAAGAATGGAGCTTTATACTGCAAATTGTCTGTCCACCGAAAACAAAC 295
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CATTCGATTGAATAAGAATGGAGCTTTATACTGCAAATTGTCTGTCCACCGAAAACAAAC 297
Query 296 CTACTCTTGAGCTTTCAAAATTAGTCAAAGAAGAGAAAAGCTCGGTGAAAACGAACAGCG 355
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 298 CTACTCTTGAGCTTTCAAAACTAGTCAAAGACGAGAAAAGCTCGGTGAAAACGAACAGCG 357
Query 356 AAAACACCTTTACACTTGTGAATCATGGTGCAAAGATGTGGCAAGAGAACAGGGAAAAAT 415
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 AAAACACCCTTACACTTGTGAATCATGGTGCAAAGATGTGGCAAGAGAACAGGGAAAAAT 417
Query 416 GGGTGGGAGATCAATCTGGACAAAGAAAAAACACTGCAAAGGATCAGATAATAAGCTGGT 475
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 418 GGGTGGGAGATCAATCTCGACAAAGAAAAAACACTGCAAAGGATCAGATTATAAGCTGGT 477
Query 476 CTACTACATATGAAGATCTTCTCTCAACTCATGAACCTTTCTCTGAGTCGATTCCTTTAC 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 CTACTACATATGAAGATCTTCTCTCAACTCATGAACCTTTCTCTGAGTCGATTCCTTTAC 537
Query 536 CCGAGATGGTGGACTTTCTGGTCGATATTTGGTACGATGAAGGCCTTTACGATTAGAAGA 595
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 538 CCGAGATGGTGGACTTTCTTGTCGATATTTGGTACGATGAAGGCCTTTACGATTAGAAGA 597
Query 596 ATCTAACAATGCCACGAACTAGATTGACAAAGAACAAAGGACAAATTCAATTATGGTATG 655
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 598 ATCTAACAATGCCACGAACTAGATTGACAAAGAACAAAGGAGAGATTCAATTATGGTATG 657
Query 656 AAGTTAAATCTTTAGGAGTTGTGAAAACATCTACAGATATGATGAACTATCTACTTGTTA 715
|| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 658 AAATTAAATCTTTAGGAGTTGTGAAAACATTTACAGATATGATGAACTATCTATTTGTTA 717
Query 716 TATCCATATACTGTATCTTGAGAAAAAGACTGACCACTCACATACTCCA--TCTTTAACA 773
||||||||||||||||| |||||||||||||||| ||||| |||||||| |||||||||
Sbjct 718 TATCCATATACTGTATCATGAGAAAAAGACTGACTACTCATATACTCCACATCTTTAACA 777
Query 774 TTTATATAATT 784
||||||| |||
Sbjct 778 TTTATATGATT 788
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38127717573
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5