BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485907
Length=1788
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54920.1 | Symbols: PMR6 | Pectin lyase-like superfamily pro... 2665 0.0
> AT3G54920.1 | Symbols: PMR6 | Pectin lyase-like superfamily protein
| chr3:20345082-20348582 FORWARD LENGTH=1840
Length=1840
Score = 2665 bits (1443), Expect = 0.0
Identities = 1709/1829 (93%), Gaps = 51/1829 (3%)
Strand=Plus/Plus
Query 1 TTAGCCCTGTTTCCAGCAagagggcagagaagcagagagtgagagagagagagagtgaga 60
|||||||||||||||||||||||||||||||||||||| ||||||||| | || ||||
Sbjct 1 TTAGCCCTGTTTCCAGCAAGAGGGCAGAGAAGCAGAGA--GAGAGAGAGTGTGA--GAGA 56
Query 61 gagagaAAGCAGcttcttc-t-t-ct--tcttctCCCTCATGTGGATTCCAAATCCTTCT 115
|| || ||| ||||||| | | || |||||||||| ||||||||| |||||||||||
Sbjct 57 GAAAG-CAGCTTCTTCTTCTTCTCCTCCTCTTCTCCCTTATGTGGATTTCAAATCCTTCT 115
Query 116 CTGCTACTCTCTCTTCACATTTCTCTACCAACATTCTTCTTCTGACACTCAACACACACA 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 116 CTGCTACTCTCTCTTCACATTTCTCTACCAACATTCTTCTTCTGACACTCAACACACACA 175
Query 176 CTGCAACTTCCACGGCTAACTCAAGCAACACCAAGTCAAAATCCGCCAGTAACGATGCTT 235
||||||||||||| ||||| || ||||||||||||||||||||||||| |||||||||||
Sbjct 176 CTGCAACTTCCACAGCTAAATCTAGCAACACCAAGTCAAAATCCGCCACTAACGATGCTT 235
Query 236 CTTCAAAACTTCTCCAACACCATTTTCCTTCTCTGCCTCTTCTTCACACTCCTCGCCGCC 295
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 236 CTTCAAAACTTCTCCAACACCATTTTCCTTCTCTGCCTCTTCTTCACACTCCTCTCCGCC 295
Query 296 ACTAAACCCTTAAATCTCACGCTCCCTCACCAACATCCTTCCCCTGATTCCGTCGCTCTC 355
||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 296 ACTAAACCCCTAAATCTCACTCTCCCTCACCAACACCCTTCCCCTGATTCCGTCGCTCTC 355
Query 356 CATGTCATCAGGAGTGTCAATGAATCTCTTGCAAGAAGACAACT-AG-------GC-TCG 406
||||||||||||||||| |||||||||||||||||||||||||| || | ||
Sbjct 356 CATGTCATCAGGAGTGTAAATGAATCTCTTGCAAGAAGACAACTAAGCTCACCATCATCA 415
Query 407 TCCtcatcatcatca---tcatcatcatcCTCCTCTTGCCGAACCGGAAACCCAATCGAC 463
||||||||||||||| || |||||||| ||||||||||| ||||||||||||||||||
Sbjct 416 TCCTCATCATCATCATCCTCCTCATCATCATCCTCTTGCCGTACCGGAAACCCAATCGAC 475
Query 464 GATTGCTGGAAATGCAGCGACTCAGACTGGTCATCAAACCGACAAAGACTAGCCGACTGT 523
|||||||||| |||||||||| ||||||||||| ||||||||||||||||||| ||||||
Sbjct 476 GATTGCTGGAGATGCAGCGACGCAGACTGGTCAACAAACCGACAAAGACTAGCAGACTGT 535
Query 524 TCAATCGGCTTCGGACACGGCACACTCGGAGGCAAAAACGGCAAGATCTACGTCGTTACA 583
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 536 TCAATCGGCTTCGGACACGGCACACTCGGAGGCAAAAACGGCAAGATCTACGTCGTAACT 595
Query 584 GACTCATCCGACAGCAACCCAACAAACCCGACACCAGGAACACTCCGTTACGGCGTAATC 643
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 596 GACTCATCCGACAACAACCCAACAAACCCAACACCAGGAACACTCCGTTACGGCGTAATC 655
Query 644 CAAGAAGAGCCACTCTGGATCGTCTTCTCCTCAAACATGCTCATCAGATTAAAACAAGAA 703
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 656 CAAGAAGAGCCACTCTGGATCGTCTTCTCTTCAAACATGCTCATCAGACTAAAACAAGAA 715
Query 704 CTCATCATCAACAGCTACAAAACCTTAGACGGTCGTGGCTCAGCCGTACACATAACCGGA 763
||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct 716 CTCATCATCAACAGCTACAAAACCTTAGATGGTCGTGGCTCAGCCGTTCACATTACCGGA 775
Query 764 GACGGTTGCTTAACTCTCCAATACGTTCAACACATCATCATCCACAACCTCCACATCTAT 823
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 776 AACGGTTGCTTAACTCTCCAATACGTTCAACACATCATCATCCACAACCTCCATATCTAT 835
Query 824 GACTGCAAACCTTCAGCTGGATTCGAAAAACGAGGTAGATCCGATGGAGATGGGATCTCA 883
||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 836 GACTGTAAACCTTCAGCTGGATTCGAGAAACGTGGTAGATCCGATGGAGATGGGATCTCG 895
Query 884 ATCTTCGGATCTCAGAAGATCTGGGTTGATCATTGTTCAATGAGTCATTGCACCGACGGG 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 ATCTTCGGATCTCAGAAGATCTGGGTTGATCATTGTTCAATGAGTCATTGCACCGACGGG 955
Query 944 CTTATTGATGCTGTGATGGGTTCAACAGCTATAACTATATCTAACAATTACTTCACGCAT 1003
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 956 CTAATTGATGCTGTGATGGGTTCTACAGCTATAACTATATCTAACAATTACTTCACCCAC 1015
Query 1004 CACGACGAAGTGATGTTGTTGGGTCATGATGATAACTATGCGCCTGATACGGGGATGCAA 1063
|||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1016 CACGACGAGGTTATGTTGTTGGGTCATGATGATAACTATGCTCCTGATACGGGGATGCAA 1075
Query 1064 GTGACCATAGCTTTTAATCATTTTGGACAAGGGCTTGTTCAGAGGATGCCTAGATGTCGG 1123
||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1076 GTGACGATAGCGTTTAATCATTTCGGACAAGGGCTTGTTCAGAGGATGCCTAGGTGTCGG 1135
Query 1124 AGAGGTTACATTCATGTAGTGAATAATGATTTCACTGAGTGGAAAATGTATGCTATTGGT 1183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 AGAGGTTACATTCATGTAGTGAATAATGATTTCACTGAGTGGAAAATGTATGCTATTGGT 1195
Query 1184 GGTAGTGGTAATCCCACCATTAACAGTCAAGGAAATCGTTACGCTGCTCCTTCTGATCCT 1243
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1196 GGTAGTGGTAATCCCACCATTAACAGTCAAGGAAATCGTTACTCTGCTCCTTCTGATCCT 1255
Query 1244 AGCGCCAAAGAGGTGACGAAGCGAGTGGACTCGAAGGACGATGGTGAATGGGCGAATTGG 1303
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1256 AGCGCCAAAGAGGTGACGAAGCGAGTGGACTCGAAGGACGATGGTGAATGGTCGAATTGG 1315
Query 1304 AATTGGAGAACAGAAGGAGATTTGATGGAGAATGGAGCTTTCTTTGTGGCTTCTGGTGAA 1363
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1316 AATTGGAGAACAGAAGGGGATTTGATGGAGAATGGAGCTTTCTTTGTGGCCTCTGGTGAA 1375
Query 1364 GGAATGAGCTCAATGTACTCTAAAGCTTCTAGTGTTGACCCTAAAGCTGCTTCTCTCGTC 1423
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 GGAATGAGCTCAATGTACTCTAAAGCTTCTAGTGTTGACCCTAAAGCTGCTTCTCTCGTA 1435
Query 1424 GACCAGCTCACTCGAAACGCTGGCGTTTTTGGCGGTCCCAGGGATGATCAAGGTCAGAGT 1483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 GACCAGCTCACTCGAAACGCTGGCGTTTTTGGCGGTCCCAGGGATGATCAAGGTCAGAGT 1495
Query 1484 GGCAATTCTTACTCTCCGTATGGAGGCGACGGCGGTGGAGG-G--A-------TGG-A-C 1531
||||||||||||||||| |||||||||||||||||||| || | | ||| | |
Sbjct 1496 GGCAATTCTTACTCTCCTTATGGAGGCGACGGCGGTGGCGGTGGGAGCAGCGGTGGGAGC 1555
Query 1532 -GATATGG-G---TGG---T-ATGGGCGGTACGACGAGAGGAAGCAGCAGCAGC-G-G-C 1579
| ||| | ||| | ||||| ||||||||||||||||||||||||||| | | |
Sbjct 1556 AGCGGTGGAGGGATGGACGTTATGGGAGGTACGACGAGAGGAAGCAGCAGCAGCAGCGGC 1615
Query 1580 GACGACAGCAATGTCTTCCAGATGATATTTGGAAGCGATGCACCGTCTCGGCCGCGATTA 1639
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1616 GATGACAGCAATGTCTTCCAGATGATATTTGGAAGCGATGCACCGTCTCGGCCGCGTTTA 1675
Query 1640 ACGTTATTGTTTTCTTTGTTAAAGATTTCGGTTTTGTCATTATCAACTCTATTATTGTGG 1699
|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1676 ACGTTATTGTTTTCTTTGTTAATGATTTCGGTTTTGTCGTTATCAACTCTATTATTGTG- 1734
Query 1700 TAGAAGGAATGGATAGCAAATAGGATTTGGACCGTTCAATTGATTGGTTTTTGGTGTAAA 1759
| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1735 -AC--G-AATGGATAACAAATAGGATTTGGACCGTTCAATTGATTGGTTTTTGGTGTAAA 1790
Query 1760 GTGTGGCTCTCTCTCCATTATTTTCTTTA 1788
|||||||||||||||||||||||||||||
Sbjct 1791 GTGTGGCTCTCTCTCCATTATTTTCTTTA 1819
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88453360290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5