BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485911
Length=1236
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54940.2 | Symbols: | Papain family cysteine protease | chr... 1930 0.0
> AT3G54940.2 | Symbols: | Papain family cysteine protease | chr3:20354351-20356318
FORWARD LENGTH=1346
Length=1346
Score = 1930 bits (1045), Expect = 0.0
Identities = 1174/1237 (95%), Gaps = 5/1237 (0%)
Strand=Plus/Plus
Query 1 TAAGGCCACCTCAAAACAAGACCCATCGATAACAGCGATCATGGTGGCTAAAGCCTTAGC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 12 TAAGGCCACCTCAAAACAAGACCCATCGATAACAGCGATCATGGTGGCTAAAGCCTTAGC 71
Query 61 ACAGCTGATAACATGCATCATCTTCTTCTGCCACGTTGTAGCTTCCGTAGAGGACCTGAC 120
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 72 ACAGCTGATAACATGCATCATCTTATTCTGCCACGTTGTAGCTTCCGTAGAAGACCTCAC 131
Query 121 CATACGCCAAGTCACGGCGGACGAGCGGCGAGTACGCCCGAATCTTCTTGGGACTCACAC 180
|||||||||||||||||| ||| | |||||| | |||||||||||||| |||||||||||
Sbjct 132 CATACGCCAAGTCACGGCCGACAATCGGCGAATTCGCCCGAATCTTCTCGGGACTCACAC 191
Query 181 CGAGAGTAAATTCCGGGTTTTCATGTCCGATTACGGCAAGAACTACTCGACGAGGGAGGA 240
||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 192 AGAGAGTAAATTCCGGCTTTTCATGTCCGATTACGGCAAGAACTACTCCACGAGGGAGGA 251
Query 241 GTACATCCACCGCCTCGGAATATTTGCCAAAAACGTCCTCAAGGCGGCAGAGCACCAGAT 300
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 252 GTACATCCACCGCCTCGGAATATTTGCCAAAAACGTCCTTAAGGCCGCAGAGCACCAGAT 311
Query 301 GATGGACCCCACCGCCGTCCACGGAGTCACACAATTCTCTGACCTCACGGAAGAGGAGTT 360
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 312 GATGGACCCCTCCGCCGTCCACGGAGTCACACAGTTCTCTGACCTCACGGAAGAGGAGTT 371
Query 361 CAAGCGGATGTACACTGGAGTAGCCGATGTTGGCGGCAGCCGTGGCCATGCGGTTGGAGC 420
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 372 CAAGCGGATGTACACTGGAGTAGCCGATGTTGGCGGCAGCCGTGGCGGTACGGTTGGAGC 431
Query 421 GGAGGCACCTATGGTTGAGGTTGATGGATTGCCTGAAGATTTTGACTGGAGGGAGAAAGG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 432 GGAGGCACCTATGGTTGAGGTTGATGGATTGCCTGAAGATTTTGACTGGAGGGAGAAGGG 491
Query 481 TGGAGTTACTGAGGTCAAGAATCAAGGTGCATGTGGATCGTGCTGGGCTTTTAGCACAAC 540
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 TGGAGTTACTGAGGTTAAGAATCAAGGTGCATGTGGATCGTGCTGGGCTTTTAGCACAAC 551
Query 541 AGGAGCAGCTGAAGGAGCCCATTTTGTCTCCACCGGGAAGCTCCTCAGTCTTAGCGAGCA 600
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 552 GGGAGCAGCTGAAGGAGCCCATTTCGTCTCCACCGGGAAGCTCCTCAGTCTTAGCGAACA 611
Query 601 ACAACTTGTCGATTGTGATCAAGCGGTCTGCGATCCAAAGGACAAGAAAGCATGTGACAA 660
||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||
Sbjct 612 ACAACTTGTCGATTGTGATCAAGCG-T--GCGATCCAAAGGACAAGAAAGCATGCGACAA 668
Query 661 TGGATGTGGTGGGGGACTCATGACAAATGCCTATGAGTATTTGATGGAGGCAGGAGGATT 720
||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 669 TGGATGTGGCGGGGGACTGATGACAAATGCCTACGAGTATTTGATGGAGGCAGGAGGATT 728
Query 721 AGAAGAAGAAAGGTCATATCCTTACACCGGTAAACGAGGCCATTGCAAGTTCGATCCTGA 780
|||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 729 AGAAGAAGAAAGATCATATCCTTACACTGGTAAACGAGGCCATTGCAAGTTTGATCCTGA 788
Query 781 GAAGGTTGCGGTAAGAGTAGTGAACTTCACGACTATACCACTAGATGAGGACCAAATCGC 840
||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||
Sbjct 789 GAAGGTTGCGGTAAGAGTACTGAACTTCACGACTATACCACTGGATGAGAACCAAATCGC 848
Query 841 AGCAAATTTAGTTCGACAGGGTCCCTTAGCAGTGGGATTAAACGCGGTGTTCATGCAAAC 900
|||||| |||||||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 849 AGCAAACTTAGTTCGGCATGGTCCCTTAGCAGTGGGATTAAACGCCGTGTTCATGCAAAC 908
Query 901 GTATATAGGAGGAGTGTCGTGTCCGCTTATATGCAGCAAGAGAAAGGTTAACCACGGGGT 960
||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||| ||
Sbjct 909 ATATATAGGAGGAGTGTCATGTCCGCTTATATGCAGCAAGCGAAACGTTAACCACGGAGT 968
Query 961 ACTTCTTGTTGGGTACGGATCAAAAGGGTTTTCGATCTTGCGGCTTAGTAATAAACCCTA 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 969 ACTTCTTGTTGGGTACGGATCAAAAGGGTTTTCGATCTTGCGGCTTAGTAATAAACCTTA 1028
Query 1021 TTGGATTATCAAGAACTCGTGGGGGAAGAAGTGGGGAGAGAATGGATACTACAAGCTGTG 1080
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1029 TTGGATTATCAAAAACTCGTGGGGGAAAAAGTGGGGAGAGAATGGATACTACAAGCTGTG 1088
Query 1081 TCGTGGCCACGATATTTGTGGGATTAACTCAATGGTCTCTGCAGTAGCCACCCAAGTTTC 1140
|||||| |||||||| |||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1089 TCGTGGGCACGATATATGTGGGATTAACTCGATGGTATCTGCAGTAGCCACCCAAGTTTC 1148
Query 1141 GTCGTAGATGGTTCTTGTCCTTTC-TCTGCACTCTTCTTTTTTAATCTAGGGTTTTATCA 1199
|||||||||| ||||||| |||| ||||| ||||| |||| ||||||||||||| ||||
Sbjct 1149 CTCGTAGATGGGTCTTGTC-TTTCCTCTGCTCTCTTGTTTTCTAATCTAGGGTTTGATCA 1207
Query 1200 TGTTTTAGGAGTGGAGTTGGGGGTTTGAATATCGGGT 1236
|||||||||||||||||| ||||||||||||| ||||
Sbjct 1208 TGTTTTAGGAGTGGAGTTTGGGGTTTGAATATTGGGT 1244
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60742659450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5