BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485912
Length=2083
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54950.1 | Symbols: PLP7, PLA IIIA | patatin-like protein 6 ... 2313 0.0
AT2G39220.1 | Symbols: PLP6, PLA IIB | PATATIN-like protein 6 |... 885 0.0
> AT3G54950.1 | Symbols: PLP7, PLA IIIA | patatin-like protein
6 | chr3:20358896-20361233 REVERSE LENGTH=2106
Length=2106
Score = 2313 bits (1252), Expect = 0.0
Identities = 1362/1415 (96%), Gaps = 7/1415 (0%)
Strand=Plus/Plus
Query 672 AACCCGAACCCGCGGATTCGGCGGTTGCTGGCTCGATTAAGAACCAGAGAGGTAAAATCT 731
|||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 695 AACCCGAACCCGCGAATTCGGTTGTTGCTGGGTCGATTAAGAACCAGAGAGGTAAAATCT 754
Query 732 GTATTCTGAGCATCGATGGAGGTGGAATGAGAGGGATTTTACCCGGTAAGGCTTTGGCTT 791
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 755 GTATTCTGAGTATCGATGGAGGTGGAATGAGAGGGATCTTACCCGGTAAGGCTTTGGCTT 814
Query 792 ATCTAGAACACGCTCTGAAATCTAAATCGGGTGACCCGAATGCCCGAATCGCCGATTACT 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 ATCTAGAACACGCTCTGAAATCTAAATCGGGTGACCCGAATGCCCGAATCGCCGATTACT 874
Query 852 TTGATGTAGCCGCCGGGTCCGGTATAGGTGGGATTTACACAGCGATGTTGTTCGGGTCAA 911
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 875 TTGACGTAGCCGCCGGGTCCGGTATAGGTGGGATTTACACAGCCATGTTGTTCGGGTCAA 934
Query 912 GAGACGGTAACCGTCCGATCTTCAAAGCAGAGGACACGTGGCAGTTCTTAACGAGAAACG 971
||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 935 GAGACGGTAACCGCCCCATCTTCAAAGCAGATGACACGTGGCAGTTCTTAACGAGAAACG 994
Query 972 CCAAGGGTCTTTACGGAGGAGGAGGAGGAATCTTGAAACGGGTCTTGAGAACCGGGTCGG 1031
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 995 CCAAGGGTCTTTAC---GGAGGAGCAGGAATCTTGAAACGGGTCTTGAGAACCGGGTCGG 1051
Query 1032 GTTGTTGTTCCGGGACGGCTAAGTTAAAGAAAGTGATGAAAGAGTCTTTCTCGGAGCTAA 1091
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1052 GTTGTTGTTCCGGGACGGCTAAGTTAAAGAAAGTGATGAAAGAGTCTTTCTCGGAGCTAA 1111
Query 1092 CCTTAAAGGACACGCTTAAACCGGTGCTTATACCTTGCTACGACCTCAAAAGCTCTGCCC 1151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1112 CCTTAAAGGACACGCTTAAACCGGTGCTTATACCTTGCTACGACCTCAAAAGCTCTGGCC 1171
Query 1152 CGTTTCTGTTCTCACGCGCCGATGCGCTTGAGACGGACGGCTATGATTTTAGGCTCTGGG 1211
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1172 CGTTTCTGTTCTCACGGGCCGATGCGCTTGAGACGGACGGCTATGATTTTAGGCTCTCGG 1231
Query 1212 AGGTTTGTAGAGCGACTTGGGCTGAGCCGGGGGTGTTTGAGCCGGTGGAGATGAAGTCGG 1271
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1232 AGGTTTGTAGAGCGACTTGGGCTGAGCCGGGTGTGTTTGAGCCCGTGGAGATGAAGTCGG 1291
Query 1272 TTGATGGGCAGACCAAGTGTGTGGCCGTTGGTGGAGGATTAGCGATGAGCAATCCCACAG 1331
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1292 TTGATGGGCAGACCAAGTGTGTGGCTGTTGGTGGAGGATTAGCCATGAGCAATCCCACAG 1351
Query 1332 CGGCTGCAATCACGCATGTGCTGCACAACAAGCAGGAGTTTCCGTTTGTGCGAGGTGTTG 1391
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1352 CGGCTGCAATCACGCATGTCCTGCACAACAAGCAGGAGTTTCCGTTTGTGCGAGGTGTTG 1411
Query 1392 AGGATTTGCTTGTGTTGTCTCTTGGTATGGGTCAGTTGCTTGATGTTAGCTATGAGTATG 1451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1412 AGGATTTGCTTGTGTTGTCTCTTGGTATGGGTCAGTTGCTTGATGTTAGCTATGAGTATG 1471
Query 1452 ATCGGATTATCAAGTGGAAGGCTAAGCATTGGGCCCGTCCCGCGGCTCTTATTTCTAATG 1511
|||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||
Sbjct 1472 ATCGGATTATCAAGTGGAAGGCTAAGCATTGGGCTCGCCCCGCAGCTCTTATTTCTAATG 1531
Query 1512 ACGGTGCTGCTGACACCGTCGATCAAGCTGTGGCCATGGCTTTTGGTCACTGCCGCAGTA 1571
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1532 ACGGTGCTGCTGACACTGTCGATCAAGCTGTGGCCATGGCTTTTGGTCACTGCCGCAGTA 1591
Query 1572 GTAACTATGTCCGGATTCAGGCGAATGGGTCGAGCTTAGGACCTTGTAGTCCAAACATAG 1631
||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||| |
Sbjct 1592 GTAACTATGTCCGGATTCAGGCGAATGGGTCGAACTTAGGACCTTGGAGTCCTAACATGG 1651
Query 1632 ACACAGACCCTAGAGGGAGCAATGTGAATATGCTGGTGGGAGTAGCAGAGGAGATGCTGA 1691
||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1652 ACACAGACCCTAGTGGGAGCAATGTGAATATGCTGATGGGAGTAGCAGAGGAGATGCTTA 1711
Query 1692 AGCAAAAGAATGTTGAATCTGTTTTGTTTGGAGGTAAAAGAATCGATGAACAGAGCAACT 1751
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1712 AACAAAAGAATGTTGAATCTGTTTTGTTTGGAGGTAAAAGAATCGATGAACAGAGCAACT 1771
Query 1752 TCGAGAAGCTTGACTGGTTAGCCGGGGAACTTGTTCTCGAGCATCAAAGGAGAAATAGCA 1811
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1772 TCGAGAAGCTTGACTGGTTAGCTGGGGAACTTGTTCTCGAGCATCAAAGGAGAAATAGCA 1831
Query 1812 GAATCGCTCCAACCGTAGCGTTCAAGCAATCCATCCATAGAGCAGATCAAAAGACAAGGG 1871
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
Sbjct 1832 GAATCGCTCCAACCGTAGCGTTCAAGCAATCCGTGCATAGAGCAGATCAAAAGACAAGTG 1891
Query 1872 ACAAAGATATCGGTGTGACCGCAAGAGAACGATGAAATAAGAAAATGGTTTACTTAGATG 1931
| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 1892 ATAAAGATATCGGTGTGACCGCAAGAGAACGATGAAATAAGAAA-TGGTTTGCTTAGATG 1950
Query 1932 ATTGTTT-AGGATAAGGTTTT-ATTTATTTCTTCTTAGGTCATGATTTGTTGTATAGATT 1989
||| ||| | ||||||||||| |||| ||||||||||||| |||||||||||||||||||
Sbjct 1951 ATTTTTTTAAGATAAGGTTTTTATTTCTTTCTTCTTAGGTTATGATTTGTTGTATAGATT 2010
Query 1990 TGTGTTTTTGAGTTTGAGTTTCCGAGACATGATGAGAAAAGGGGAAACACCTATCATCTT 2049
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2011 TGTGTTTTTGAGATTGAGTTTCTGAGACATGATGAGAAAAGGGGAAACACCTATCATCTT 2070
Query 2050 GCAAA-AGGGCTCAAGCTCCTTCATTCATGCTGCC 2083
||||| |||||||||||||||| || |||||||||
Sbjct 2071 GCAAAGAGGGCTCAAGCTCCTTAATCCATGCTGCC 2105
Score = 436 bits (236), Expect = 3e-121
Identities = 337/381 (88%), Gaps = 26/381 (7%)
Strand=Plus/Plus
Query 262 GATACCA-ttttt-t-t-t-tACCAGAAGTCGAAGACTGG--T--TTTTTGGTTTTGGTC 312
||||||| ||||| | | | ||||| ||||| |||||||| | ||||||| |||||||
Sbjct 319 GATACCATTTTTTATATATATACCAAAAGTCCAAGACTGGTTTCATTTTTGGGTTTGGTC 378
Query 313 TGAAATCGCTCT-TTC-T-TCGTGTTGTTCATCGTATGTATTAATTGGGGT--CAAGTTA 367
||||| | |||| ||| | | || |||||||| |||||| |||||| |||| || ||
Sbjct 379 TGAAA-C-CTCTCTTCGTGTTGT-TTGTTCATGGTATGTCTTAATTAGGGTAAAAAAATA 435
Query 368 CTTGATTGGTTTCTCTCAATCATCATGCACAGAGTACGCAATAAACCGATTAAATCCACC 427
|||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 436 CTTGATTGTTTTCTCTCAATCATCATGCATAGAGTACGCAATAAACCGGTTAAATCCACC 495
Query 428 GCTACTGCTTCCGTTAAGCATTTAATCAAACAGAGAGGCGGAGGGAGCGACGGAGCTACG 487
|||||||||||||| |||||||||||||||||||||||| | ||||||||||||||
Sbjct 496 GCTACTGCTTCCGTCAAGCATTTAATCAAACAGAGAGGC-----G-GCGACGGAGCTACG 549
Query 488 GCGGCTTCCAAGTCGGCGAATGATAATAATAATCAGAATAATAGTCTCTTGACGGATATG 547
|||||||||||||||||||||||| |||||||| | | | ||||||||||||||||||||
Sbjct 550 GCGGCTTCCAAGTCGGCGAATGATTATAATAAT-A-A-TGATAGTCTCTTGACGGATATG 606
Query 548 CAGGAACCTAGCATCGATACAGATAAACTCAGCTACGAGATTTTCTCGATTCTTGAGAGC 607
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 607 CAGGAACCAAGCATCGATACAGATAAACTCAGCTACGAGATTTTCTCTATTCTTGAGAGC 666
Query 608 AAATTTCTTTTCGGGTACGAC 628
|||||||||||||||||||||
Sbjct 667 AAATTTCTTTTCGGGTACGAC 687
Score = 329 bits (178), Expect = 5e-89
Identities = 244/273 (89%), Gaps = 16/273 (6%)
Strand=Plus/Plus
Query 1 TTTGTCCTTTCTCTTCAATCTGGGTTTGGTGGGGAGGTTTTAAGTCAAGCGTGCGATATA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 21 TTTGTCCTTTCTCTTCAATCTGGGTTTGGTGGGGAGGTTTTAAGTCAAGCGTGCGATATA 80
Query 61 TATATC-TCAAAACAGACATCCTCTGTTCTTGCCtcttcttcttcttcttctt-T--ATC 116
|||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 81 TATATCATCAAAACAGACATCCTCTGTTCTTGCCTCTTCTTCTTCTTCTTCTTCTTCATC 140
Query 117 TA-TACTATAT-T-GGTGTTTCATTTGTTCTGCTT-AAGAGTAAA-AAAGATTCATCCTT 171
| | |||||| | ||||||||||||||||||||| || |||| | ||||||||||| ||
Sbjct 141 TTCTTCTATATATTGGTGTTTCATTTGTTCTGCTTTAAAAGTACACAAAGATTCATCTTT 200
Query 172 TGATCGGTCCTCCTTCTGATTTGGCTAAAGACGAGCTCGCTCGTGTTTTGAACAAGAGAT 231
| ||||||||| | |||| ||| |||||| |||||| ||||||||||||||||||||
Sbjct 201 TT-TCGGTCCTC-T---GATTGGGCAAAAGACTAGCTCGGTCGTGTTTTGAACAAGAGAT 255
Query 232 ACAGGATTTTGAAGG-TTCCTCGCAAAAGAAGA 263
||| | ||||||| |||||||||||||||||
Sbjct 256 ACATG-TTTTGAAAAATTCCTCGCAAAAGAAGA 287
> AT2G39220.1 | Symbols: PLP6, PLA IIB | PATATIN-like protein 6
| chr2:16374896-16377020 REVERSE LENGTH=2016
Length=2016
Score = 885 bits (479), Expect = 0.0
Identities = 942/1162 (81%), Gaps = 46/1162 (4%)
Strand=Plus/Plus
Query 708 TTAAGAACCAGAGAGGTAAAATCTGTATTCTGAGCATCGATGGAGGTGGAATGAGAGGGA 767
|||||||||||||||||||| | ||| || |||| |||||| | ||||||||||||||||
Sbjct 659 TTAAGAACCAGAGAGGTAAAGTTTGTGTTTTGAGTATCGATAGTGGTGGAATGAGAGGGA 718
Query 768 TTTTACCCGGTAAGGCTTTGGCTTATCTAGAACACGCTCTGAAATCTAAATCGGGTGACC 827
|| |||| || || |||||||||||||| ||||| ||||||||||| |||||||||||||
Sbjct 719 TTATACCTGGAAAAGCTTTGGCTTATCTGGAACATGCTCTGAAATCGAAATCGGGTGACC 778
Query 828 CGAATGCCCGAATCGCCGATTACTTTGATGTAGCCGCCGGGTCCGGTATAGGTGGGATTT 887
||||||| |||||||| |||||||| || ||||| |||| |||||||| ||||||||||
Sbjct 779 CGAATGCTCGAATCGCTGATTACTTCGACGTAGCTTCCGGTTCCGGTATCGGTGGGATTT 838
Query 888 ACACAGCGATG-TTGTTCGGGTCAAGAGACGGTAACCGTCCGATCTTCAAAGCAGAGGAC 946
||| |||||| || || | ||| || || ||||||||||||||||||||||| || |||
Sbjct 839 TCACGGCGATGCTT-TTTGCGTCGAGCGATGGTAACCGTCCGATCTTCAAAGCGGAAGAC 897
Query 947 ACGTGGCAGTTCTTAACGA-GAAACGCCAAGGGTCTTT---ACGGAGGAGGA--GGAGGA 1000
||||||| ||| ||| | | |||| | || | | ||| || | | | || ||
Sbjct 898 ACGTGGCGGTTTTTAGCTATGAAAGGTAAAAGCT-TTTACAACAAATCACCACCGG-GG- 954
Query 1001 AT-CTTGAAAC-GGGTCT-TGAGAACCGGGTCGGGTTGTT--GTTCCGGGAC-GG--CTA 1052
|| | | |||| |||| | ||| ||||||||||||| ||| | | ||| | || | |
Sbjct 955 ATAC-T-AAACAGGGT-TATGAAAACCGGGTCGGGTGGTTCGGGT--GGGTCAGGTTCGA 1009
Query 1053 AG-TTAAAGAAAGTGATGAAAGAGTCTTTCTCGGAGCTAAC-CTTAAAGGACACGCTTAA 1110
|| || |||||| |||||| ||||||||| ||||| || ||| ||||| ||||||||
Sbjct 1010 AGCTT-GAGAAAGCGATGAAGGAGTCTTTCGAAGAGCTTACGCTT-AAGGATACGCTTAA 1067
Query 1111 ACCGGTGCTT-ATACCTTGCTACGACCTCAAAAGCTCTGCCCCGTTTC-TGTTCTCACGC 1168
|||||| || || ||||| |||||||||| |||||||| ||| ||| ||||||||||
Sbjct 1068 ACCGGT-TTTGATTCCTTGTTACGACCTCACGAGCTCTGCACCG-TTCTTGTTCTCACGT 1125
Query 1169 GCCGATGCGCTT-GAGACGGACGGCTATGATTTTAGGCTCTGGGAGGTTTGTAGAGCGAC 1227
|| |||||| || || |||||||| |||||||||| ||| ||||| ||||||||||| ||
Sbjct 1126 GCTGATGCG-TTGGAAACGGACGGTTATGATTTTAAGCTGTGGGAAGTTTGTAGAGCTAC 1184
Query 1228 TTGGGCTGAGCCGGGGGTGTTTGAGCCGGTGGAGATGAAG-TCGGTTGATGGGCAGACCA 1286
|||||||||||| || ||||||||||||||||||||| || || |||||||| ||| ||
Sbjct 1185 TTGGGCTGAGCCAGGAGTGTTTGAGCCGGTGGAGATG-AGATCAGTTGATGGTAAGA-CA 1242
Query 1287 -AGTGTGTGGCCGTTGGTGGAGGATTAGCGATGAGCAATCCCACAGCGGCTGCAATCACG 1345
|||||| || |||| ||| || ||||| ||||| ||||| || || || || || ||
Sbjct 1243 CGGTGTGTAGCTGTTGATGGTGGTTTAGCAATGAGTAATCCAACGGCTGCAGCGATTACT 1302
Query 1346 CATGTGCTGCACAACAAGCAGGAGTTTCCGTTTGTGCGAGGTGTTGAGGATTTGCTTGTG 1405
|||||| |||| || ||||| |||||||| ||||| |||||||||||||||||||||||
Sbjct 1303 CATGTGTTGCATAATAAGCAAGAGTTTCCTTTTGTTAGAGGTGTTGAGGATTTGCTTGTG 1362
Query 1406 TTGTCTCTTGGTATGGGTCAGTTGCTTGATGTTA-GCTATGAGTATGATC-GGATTATCA 1463
||||| ||||||| ||| |||||| ||||||||| | ||||| | |||| || |||| |
Sbjct 1363 TTGTCACTTGGTACGGGACAGTTGGTTGATGTTAAG-TATGATTGTGATAAGG-TTATGA 1420
Query 1464 AGTGGAAGGCTAAGCATTGGGCCCGTCCCGCGGCTCTTATTTCTAATGACGGTGCTGCTG 1523
|||||||||||||||||||||| || || |||| || |||||| ||| || || ||||
Sbjct 1421 AGTGGAAGGCTAAGCATTGGGCTCGACCTGCGGTTCGGATTTCTGCTGATGGAGCAGCTG 1480
Query 1524 ACACCGTCGATCAAGCTGTGGCCATGGCTTTTGGTCACTGCCGCAGTAGTAACTATGTCC 1583
| || || ||||| ||||| ||||||| |||||||| || | || |||||||| ||||
Sbjct 1481 ATACTGTGGATCAGGCTGTTTCCATGGCGTTTGGTCAGTGTAGGAGGAGTAACTACGTCC 1540
Query 1584 GGATTCAGGCGAATGGGTCGAGCTTAGGACCTTGTAGTCCAAACATAGACACAGACCCTA 1643
| |||||||||||||| || ||||| || || || | ||||||||||||||||| | |
Sbjct 1541 GTATTCAGGCGAATGGATCAAGCTTTGGTCCGTGCAAACCAAACATAGACACAGATGCGA 1600
Query 1644 GAGGGAGCAATGTGAATATGCTGGTGGGAGTAGCAGAGGAGATGCTGAAGCAAAAGAATG 1703
| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1601 GTCCAAGCAATGTGAATATGCTTGTGGGAGTAGCAGAGGAGATGCTGAAGCAGAAGAATG 1660
Query 1704 TTGAATCTGTTTTGTTTGGAGGTAA-AAGAATCGATGAACAGAGCAACT-TCGAGAAGCT 1761
|| |||||| ||||||| ||||| || |||| ||||| | ||||| | | ||||||||
Sbjct 1661 CAGAGTCTGTTCTGTTTGGTGGTAAGAA-AATCAATGAAGAAAGCAATTAT-GAGAAGCT 1718
Query 1762 TGACTGGTTAGCCGGGGAACTTGTTCTCGAGCATCAAAGGAGAAATAGCAGAATCGCTCC 1821
|| ||||||||||| ||||| || || || || || ||||| | | | |||||||||||
Sbjct 1719 GGATTGGTTAGCCGGTGAACTAGTGCTAGAACACCAGAGGAGGAGTTGTAGAATCGCTCC 1778
Query 1822 AACCGTAGCGTTCAAGCAATCC 1843
|| ||||||||||||||||||
Sbjct 1779 CACTGTAGCGTTCAAGCAATCC 1800
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103262521065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5