BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485913
Length=1891
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54960.1 | Symbols: ATPDIL1-3, PDI1, ATPDI1, PDIL1-3 | PDI-l... 3079 0.0
> AT3G54960.1 | Symbols: ATPDIL1-3, PDI1, ATPDI1, PDIL1-3 | PDI-like
1-3 | chr3:20363310-20366840 REVERSE LENGTH=1962
Length=1962
Score = 3079 bits (1667), Expect = 0.0
Identities = 1836/1914 (96%), Gaps = 25/1914 (1%)
Strand=Plus/Plus
Query 1 ACTTACATACAACAATGGCGTCGTCATCTACAAGTAtctctctccttctcttcgtctctt 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 5 ACTTACATACAACAATGGCTTCGTCATCTACAAGTATCTCTCTCCTTCTCTTCGTCTCTT 64
Query 61 tccttctccttctcGTTGACTCGCGTGCAGAGAATGCATCCAGTGGATCGGATCTCGACG 120
|| |||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 65 TCATTCTTCTTCTCGTTAACTCGCGTGCAGAGAATGCGTCCAGTGGATCGGATCTCGACG 124
Query 121 AGGAATTGGCTTTCCTCGCCGCGGAGGAATCTAAGGCACAAAGCCACGGCGGCGGTTCGT 180
| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 125 AAGAATTGGCTTTCCTCGCCGCGGAGGAATCCAAGGAACAAAGCCACGGCGGCGGTTCGT 184
Query 181 ACCAC---GAGGAGCACG---ATCAGTACCGAGACTTCGAGAATTACGATGATCTCGAGC 234
||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 185 ACCACGAGGAGGAGCACGATCATCAGCACCGAGACTTCGAGAATTACGATGATCTCGAGC 244
Query 235 AAGGAGGCGGCGAGTTTCATCACGGCGAGCACAGTTACGAGGAGGAGCCGTTACCAACAG 294
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||
Sbjct 245 AAGGAGGCGGCGAGTTTCATCACGGCGATCACGGTTACGAGGAGGAGCCGTTACCACCAG 304
Query 295 TCGACGAGAAAGACGTGGCGGTTTTGACCAAGGACAATTTCACCGAGTTCGTCCGCAACA 354
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 305 TCGACGAGAAAGACGTGGCGGTTCTGACCAAGGACAATTTCACCGAGTTCGTCGGCAACA 364
Query 355 ATAGCTTCGCGATGGTGGAGTTTTACGCTCCTTGGTGCGGCGCTTGTCAGGCTTTGGCGC 414
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
Sbjct 365 ATAGCTTCGCGATGGTGGAGTTTTACGCTCCGTGGTGCGGCGCTTGTCAGGCTTTGACTC 424
Query 415 CGGAGTACGCCGCCGCTGCCACGGAGTTGAAAGGCGTTGCCGCGCTCGCCAAGATCGACG 474
||||||||||||| ||||| ||||||||||||||| |||| |||||||| ||||||||||
Sbjct 425 CGGAGTACGCCGCGGCTGCGACGGAGTTGAAAGGCCTTGCGGCGCTCGCGAAGATCGACG 484
Query 475 CGACGGAGGAAGGCGATTTGGCTCAGAAGTACGAGATTCAGGGATTCCCCACCGTTTTCT 534
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 485 CGACGGAGGAAGGGGATTTGGCTCAGAAGTACGAGATTCAGGGCTTCCCCACCGTTTTCT 544
Query 535 TGTTTGTCGACGGAGAAATGCGCAAGACCTACGAAGGCGAAAGGACTAAGGATGGTATTG 594
||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||
Sbjct 545 TGTTTGTCGACGGAGAAATGCGCAAGACCTACGAAGGTGAAAGAACAAAGGATGGTATTG 604
Query 595 TGACTTGGCTGAAGAAGAAGGCCAGTCCTAGCATCCACAACATCACTACTAAAGAGGAGG 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 TGACTTGGCTGAAGAAGAAGGCCAGTCCTAGCATCCACAACATCACTACTAAAGAGGAGG 664
Query 655 CTGAGCGTGTTTTGTCCGCTGAACCTAAACTTGTTC-TTGGTTTTCTCAACTCCTTAGTG 713
|||| |||||||||||||||||||||||||||| || |||||||||||||||| ||||||
Sbjct 665 CTGAACGTGTTTTGTCCGCTGAACCTAAACTTG-TCTTTGGTTTTCTCAACTCATTAGTG 723
Query 714 GGGTCAGAGAGTGAGGAGCTTGCAGCTGCATCCAGACTGGAAGACGATCTCAGTTTTTAC 773
|||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 724 GGGTCAGAGAGTGAGGAGCTCGCGGCTGCGTCCAGACTGGAAGACGATCTCAGTTTTTAC 783
Query 774 CAAACTGCAAGCCCTGATATTGCAAAGCTATTTGAAATAGAAACCCAAGTCAAGCGTCCT 833
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 784 CAAACTGCAAGCCCTGATATTGCAAAGCTATTTGAAATTGAAACCCAAGTCAAGCGTCCT 843
Query 834 GCCTTAGTTTTACTGAAAAAGGAGGAAGAGAAACTTGCCCGTTTTGATGGAAATTTCACT 893
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 844 GCCTTAGTTTTACTGAAAAAGGAGGAAGAGAAACTTGCCCGTTTTGATGGAAACTTCACT 903
Query 894 AAAACGGCTATAGCAGAGTTTGTGTCAGCCAACAAAGTCCCATTGGTGATCAACTTCACA 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 AAAACGGCTATAGCAGAGTTTGTGTCAGCCAACAAAGTCCCATTGGTGATCAACTTCACA 963
Query 954 AGGGAAGGTGCATCACTGATTTTCGAGAACGCAGTGAAAAACCAACTCATTCTTTTTGCC 1013
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 964 AGGGAAGGTGCATCACTGATTTTCGAGAGCTCAGTGAAAAACCAACTCATTCTTTTTGCC 1023
Query 1014 ACGGCAAATGAATCAGAGAAGCACCTTCCCACTCTGAGGGAGGTGGCAAAGTCCTTCAAG 1073
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 AAGGCAAATGAATCAGAGAAGCACCTTCCCACTCTGAGGGAGGTGGCAAAGTCCTTCAAG 1083
Query 1074 GGAAAGTTTGTTTTTGTTTATGTGCAAATGGACAATGAGGATTATGGAGAAGCAGTTTCT 1133
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1084 GGAAAGTTTGTTTTCGTTTATGTGCAAATGGACAATGAAGATTATGGAGAAGCAGTTTCT 1143
Query 1134 GGATTCTTTGGTGTTACCGGCACTGCCCCCAAGGTTCTTGTATACACTGGAAATGAAGAT 1193
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1144 GGATTCTTTGGTGTTACCGGCGCTGCCCCCAAGGTTCTTGTATACACTGGTAATGAAGAT 1203
Query 1194 ATGAGGAAGTTTATTCTGGACGGTGAATTGACCGTAAAGAACATTAAGACACTTGCGGAA 1253
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1204 ATGAGGAAGTTTATTCTGGACGGTGAATTGACCGTAAATAACATTAAGACACTTGCGGAA 1263
Query 1254 GATTTCCTAGCAGACAAACTGAAGCCTTTCTACAAGTCAGATCCACTACCGGAAAATAAC 1313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1264 GATTTCCTAGCAGACAAACTGAAGCCTTTCTACAAGTCAGATCCACTACCGGAAAATAAC 1323
Query 1314 GACGGTGATGTTAAGGTCATTGTGGGAAACAATTTTGATGAGATTGTTCTTGACGAGTCA 1373
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1324 GATGGTGATGTTAAGGTCATTGTGGGAAACAATTTTGATGAGATTGTTCTTGACGAGTCA 1383
Query 1374 AAGGATGTCCTTCTCGAGATATATGCTCCTTGGTGTGGCCACTGCCAATCATTTGAGCCG 1433
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1384 AAGGATGTTCTTCTCGAGATATATGCTCCTTGGTGTGGCCACTGCCAATCATTTGAGCCG 1443
Query 1434 ATTTACAACAAGCTTGGAAAGTATTTAAAAGGCATTGACTCGTTAGTTGTAGCAAAGATG 1493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1444 ATTTACAACAAGCTTGGAAAGTATTTAAAAGGCATTGACTCGTTAGTTGTAGCAAAGATG 1503
Query 1494 GATGGTACCAGCAATGAGCATCCTAGAGCAAAGGCTGATGGGTTCCCAACAATCCTGTTC 1553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1504 GATGGTACCAGCAATGAGCATCCTAGAGCAAAGGCTGATGGGTTCCCAACAATCCTGTTC 1563
Query 1554 TTCCCTGGTGGAAACAAGAGCTTCGATCCGATCACTGTGGATGTTGACCGTACAGTAGTG 1613
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1564 TTCCCTGGTGGAAACAAAAGCTTCGATCCGATCGCTGTGGATGTTGACCGTACAGTAGTG 1623
Query 1614 GAACTGTACAAATTCCTGAAGAAGCACGCATCAACCCCATTTAAACTTGAGAAACCGGCG 1673
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1624 GAACTGTACAAATTCCTGAAGAAGCACGCATCAATCCCATTTAAACTTGAGAAACCGGCG 1683
Query 1674 ACACCTGAACCGGTGATCTCGACCAAGAAAGCTGATGAGAAGATCGAGGGTGATAGTTCC 1733
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 1684 ACACCTGAACCGGTGATCTCGACCATGAAATCTGATGAGAAGATCGAGGGTGATAGTTCC 1743
Query 1734 AAGGATGAGTTGTGATGATCGGAACAGAGTGTGTAACA-GGCTATAGATGATGACTCTTC 1792
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1744 AAGGATGAGTTGTGATGATCGGAACAGAGTGTGTAACAAGGCTATAGATGATGACTCTTC 1803
Query 1793 TATACATGATAAAAAAt-tttt----ttt----------ATTGTTGTATGCTATGAAATG 1837
|||| |||||| ||||| |||| ||| |||||||||||||||||||||
Sbjct 1804 TATAAATGATAGAAAATGTTTTGCCCTTTGTTTTTTTCCATTGTTGTATGCTATGAAATG 1863
Query 1838 AATAATTAAAAGAATTTTTGGTTTCTCAAGTTTGTGGATGTAACTGGAGGTTTG 1891
|||||||||| ||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 1864 AATAATTAAA-GAAGTTTTGGTTTCTCAAGTTTTTGGATGTAACTGGAGGTTTG 1916
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93624016425
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5