BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485927
Length=1601
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55070.1 | Symbols: | LisH/CRA/RING-U-box domains-containin... 2588 0.0
> AT3G55070.1 | Symbols: | LisH/CRA/RING-U-box domains-containing
protein | chr3:20408286-20411140 FORWARD LENGTH=1601
Length=1601
Score = 2588 bits (1401), Expect = 0.0
Identities = 1538/1604 (96%), Gaps = 10/1604 (1%)
Strand=Plus/Plus
Query 1 ATCAATCAATCAAGATCACCACCACAAGGCAAAATCTAAACTCTCTCTGCGAACTTTGTG 60
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||
Sbjct 5 ATCAATCAATCAAGATCACCACCACAAGGCAAAATCTAAACTCTCTCTGCAAAATTTCTG 64
Query 61 CTAACTTCTTTC-CCCATTTTCTTGCCATGGAAATCGATTCCGCCACCAACGGAAACTCT 119
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 65 CTAACTTCTTCCTCCCATTTTCTTGCCATGGAAATCGATTCCGCCACCAACGGAAACTCT 124
Query 120 GACGCCGTCATGACGGAATCCACCGCTACGATCACTCCGTCGCCGGTCGTCGTCCCGTCT 179
||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 125 GACACCGTCATGACGGAATCCGCCGCTACGATCACTCCGTCGCCGGTCGTCGTCTCGTCT 184
Query 180 TCGAGATCGAATCAATTTACTGAATCGCTCAAGCTTGAGCACCAGCTCCTCCGCGTACCT 239
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct 185 TCGAGATCGAATCAATTTACGGAATCTCTCAAGCTTGAGCACCAGCTCCTCCGCGTTCCT 244
Query 240 TTCGAGCATTACAAGAAGACGATCCGTACCAATCACCGTTCTTTCGAGAAAGAGGTATCA 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 245 TTCGAGCATTACAAGAAGACGATCCGTACCAATCACCGTTCTTTCGAGAAAGAGGTCTCA 304
Query 300 ACTGTTGTTAACGGCGTCGGAGAATTGGCTGATTCCGATTGGTCTAAAGACGCCACCGTT 359
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 305 ACCATTGTTAACGGCGTCGGAGAATTGGCTGATTCCGATTGGTCTAAAGACGATACCGTT 364
Query 360 TCGCGTCTTACTAGCCTTGTTACTCGATTACAAGGCCTCAAACGAAAGTTGGAAGAAGGG 419
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 TCGCGTCTTACTTGCCTTGTTACTCGATTACAAGGCCTCAAACGAAAGTTGGAAGAAGGG 424
Query 420 AGCAATGTGGAGAATTTACAAGCCCAGAGATGTCGTGCTCGCATCGATCATTTGGATTCA 479
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 AGCAATGTGGAGAATTTGCAAGCCCAGAGATGTCGTGCTCGCATCGATCATTTGGATTCA 484
Query 480 GTAGATGTGGAAAATATTACTGAATGGAACAATACAAAACTGAAACGGATTCTTGTGGAC 539
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||
Sbjct 485 GTAGATGTGGAAAATATTACTGAATGGAATAATACCAAACTGAAACGGATTCTTGTAGAC 544
Query 540 TATATGCTGCGGATGTCATATTTCGAGACTGCTACAAAGCTTTCAGAAAGCAGCAATATT 599
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 545 TACATGCTGCGGATGTCATATTTCGAGACTGCTACAAAGCTTTCGGAAAGCAGCAATATT 604
Query 600 TTGGACCTTGTCGACATTGACATATTTCGAGAAGCTAAGAAGGTGATTGACGCCCTTAAA 659
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 605 ATGGACCTTGTCGACATTGACATATTTCGAGAAGCTAAGAAGGTGATTGATGCCCTTAAA 664
Query 660 AATAAGGAGGTAGCTTCTGCATTGGCATGGTGTGCTGATAATAAAACCCGGCTGAAAAAG 719
|||| ||||||||||||||||||| |||||||||||||||| ||||| ||| ||||||||
Sbjct 665 AATAGGGAGGTAGCTTCTGCATTGACATGGTGTGCTGATAACAAAACGCGGTTGAAAAAG 724
Query 720 TCAAAGAGCAAATTTGAGTTCCAGCTAAGGCTGCAAGAATTCATTGAGTTGGTACGGGTT 779
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct 725 TCAAAGAGCAAATTTGAGTTCCAACTAAGGCTGCAAGAATTCATCGAGTTGGTACGAGTT 784
Query 780 GATACAGCTGACAGCTACCAAAAAGCAATCCAGTATGCTCGAAAGCATCTAGCATCATGG 839
||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 785 GATACAGCTGAGAGCTACAAAAAAGCAATCCAGTATGCTCGAAAGCATCTGGCATCATGG 844
Query 840 GGAGCAACCCATATGAATGAATTGCAGCATGTCCTGGCCACTTTGGCTTTTAAAAGTACT 899
||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 845 GGAACAACCCATATGAAAGAATTGCAGCATGTTCTGGCCACTTTGGCTTTTAAAAGTACC 904
Query 900 ACAGAATGCTTAAAATATAAGGTTTTGTTTGAACCACAACAGTGGGATGTTTTAGTTGAT 959
|||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 905 ACAGAATGCTCAAAATATAAGGTTTTGTTTGAACTACGACAGTGGGATGTTTTAGTTGAT 964
Query 960 CAGTTTAAACAAGAATTTTGCAAGTTATATGGCATGACAATGGAACCCTTATTGAACATC 1019
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 965 CAGTTTAAACAAGAATTTTGCAAGTTATATGGCATGACGATGGAACCCTTATTGAACATC 1024
Query 1020 TACTTACAAGCAGGCTTGTCTGCGCTGAAAACTCCATATGGTTTTGAAGAAGGTTGTACC 1079
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1025 TACTTACAGGCAGGCTTGTCTGCGCTGAAAACTCCATATGGTTTAGAAGAAGGTTGTACC 1084
Query 1080 AAAGAGGACCCGCTCTCACAAGAGAACTTCCGGAAGCTAGCTTTGCCTTTACCGTTCTCC 1139
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1085 AAAGAGGACCCTCTCTCACAAGAGAACTTTCGGAAGCTAGCTTTGCCTTTACCGTTCTCC 1144
Query 1140 AAGCAGCACCATTCAAAGCTTGTTTGCTATATTTCTAAGGAGCTAATGGACACAGAGAAC 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1145 AAGCAGCACCATTCAAAGCTTGTTTGCTATATTTCTAAGGAGCTAATGGACACAGAGAAC 1204
Query 1200 CCACCACAGGTGCTGCCCAATGGCTACGTCTACAGCACCAAGGCTCTCAAGGAAATGGCG 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1205 CCACCACAGGTGCTGCCCAATGGCTACGTCTACAGCACCAAGGCTCTCAAGGAAATGGCG 1264
Query 1260 GAAAAGAATGGAGG-AATAATAACATGTCCAAGGACAGGGCTTGTCTGCAACTACACGGA 1318
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1265 GAAAAGAATGGAGGTAA-AATAACATGTCCAAGGACAGGGCTTGTCTGCAACTACACGGA 1323
Query 1319 GTTAGTTAAGGCATATATATCATGAACCCACATGCTCATAATCCTCACTTTGGTCGCCTT 1378
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1324 GTTAGTTAAGGCATATATATCATGAACCCATATGCTCATAATCCTCACTTTGGTCACCTT 1383
Query 1379 TTCAACGGATGACTGGGAAGTCAGTATTAAGGCCAAAGAAACTGAAAATTCCAACTTTCT 1438
||||| |||||||||||| | |||||||||||||||||||||||||| ||||||||||||
Sbjct 1384 TTCAATGGATGACTGGGAGGACAGTATTAAGGCCAAAGAAACTGAAATTTCCAACTTTCT 1443
Query 1439 CCATTACTAGTCTTTGTGAATATGCACTTACAGATAAAACTTTGCATCACTTAGTAGAAA 1498
|||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1444 CCATTACT---CTTTGTGAATATGCACTTGCAGATAAAACTTTGCATCACTT--TAGAAA 1498
Query 1499 CAGCTCGTTCCTTTGTATATCAAGCCATTTCTTCATTTCAGTCTTATGACAATTTTCTAG 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 CAGCTCGTTCCTTTGTATATCAAGCCATTTCTTCATTTCAGTCTTATGACAATTTTCTAG 1558
Query 1559 TCAACATGGTTTTAGGTG-AAGCATGTTTGCCTGCTTTGCTCTG 1601
||||||||||||||| || || |||||||| |||||||||||||
Sbjct 1559 TCAACATGGTTTTAG-TGGAAACATGTTTGGCTGCTTTGCTCTG 1601
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79065858375
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5