BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485933
Length=853
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55120.1 | Symbols: TT5, A11, CFI | Chalcone-flavanone isome... 1044 0.0
> AT3G55120.1 | Symbols: TT5, A11, CFI | Chalcone-flavanone isomerase
family protein | chr3:20430114-20431470 REVERSE LENGTH=930
Length=930
Score = 1044 bits (565), Expect = 0.0
Identities = 721/796 (91%), Gaps = 12/796 (2%)
Strand=Plus/Plus
Query 1 TTATCAATCGAAATTCGAACCGACTCAATAATGTCTTTC-T-C-A----TCCGTCTCTCC 53
|||||||||||||||| ||||||||||| |||||| ||| | | | | || ||||||
Sbjct 26 TTATCAATCGAAATTCCAACCGACTCAACAATGTC-TTCATCCAACGCCTGCGCCTCTCC 84
Query 54 GTCGCAGTTCCCCTCCGTCACGAAGCTTCAGGTCGACTCCGTCACGTTTGAT-CCGTCCG 112
||| | ||||||| |||||||||||||||| || |||||||||||||||| | |||||||
Sbjct 85 GTCACCGTTCCCCGCCGTCACGAAGCTTCATGTAGACTCCGTCACGTTTG-TACCGTCCG 143
Query 113 TCAAGTCGCCTGCCTCCTCCAATCCATTATTCCTCGGCGGCGCCGGTGTCCGAGGCCTTG 172
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 144 TCAAGTCACCGGCCTCCTCCAATCCATTATTCCTCGGCGGCGCCGGTGTCCGAGGCCTTG 203
Query 173 ATATCCAAGGAAAATTCGTTATCTTCACCGTCATTGGAGTATACCTAGAGGGTAACGCCG 232
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 204 ATATCCAAGGTAAATTCGTGATCTTCACCGTCATTGGAGTATACCTAGAGGGTAACGCCG 263
Query 233 TTCCTTCACTCTCCCTTAAGTGGAAGGGCAAAACTACGGAGGAGCTAACAGAGTCGGTCC 292
||||||| || || | ||||||||||| ||||||||||||||||||||||| || |||
Sbjct 264 TTCCTTCTCTATCTGTCAAGTGGAAGGGAAAAACTACGGAGGAGCTAACAGAATCTATCC 323
Query 293 CGTTCTTCCGTGAAATCGTCACAGGTGCGTTTGAGAAGTTTATCAAAGTGACGATGAAAC 352
|||||||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||
Sbjct 324 CGTTCTTCCGTGAAATAGTCACCGGTGCGTTTGAGAAGTTTATCAAGGTGACAATGAAAC 383
Query 353 TGCCGTTAACGGGACAACAATATTCCGAGAAAGTGACGGAAAACTGTGTGGCTATTTGGA 412
||||||||||||||||||||||||| |||||||||||||| || ||||||||||| ||||
Sbjct 384 TGCCGTTAACGGGACAACAATATTCGGAGAAAGTGACGGAGAATTGTGTGGCTATATGGA 443
Query 413 AATC-CTTAGGGATTTATACGGATTGTGAAGCCAAAGCTGTGGAGAAGTTTTTGGAGATC 471
|| | |||||| |||||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 444 AA-CAATTAGGGCTTTATACGGACTGTGAAGCTAAAGCTGTGGAGAAGTTCTTGGAGATC 502
Query 472 TTCAAGGAAGAAACATTCCCTCCCGGTTCATCGATCCTCTTCGCTCTCTCCCCAACCGGC 531
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 503 TTCAAGGAAGAAACATTCCCTCCCGGTTCATCGATCCTCTTCGCTCTCTCCCCTACCGGC 562
Query 532 TCTCTTACGGTTGCGTTTTCTAAAGATGATAGTATCCCTGAAACCGGGTTCGCTGTCATC 591
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||
Sbjct 563 TCTCTTACGGTTGCGTTTTCGAAAGATGATAGTATCCCTGAAACCGGGATCGCTGTGATC 622
Query 592 GAGAACAAATTGTTGGCGGAGGCGGTTCTGGAGTCAATTATCGGGAAGAACGGAGTGTCG 651
|||||||||||||||||||||||||||||||| || || |||||||||||||| |||||
Sbjct 623 GAGAACAAATTGTTGGCGGAGGCGGTTCTGGAATCTATCATCGGGAAGAACGGTGTGTCA 682
Query 652 CCTGGGACTAGGTTGAGTATTGCAGAGAGATTAGCTAAACTGATGACGAAGAACAAGGTT 711
||||| |||||||| ||| ||||||| |||||| || | || |||| |||||||||||
Sbjct 683 CCTGGCACTAGGTTAAGTGTTGCAGAAAGATTATCTCAGCTAATGATGAAGAACAAGGAC 742
Query 712 GAAGAGGACGCTAGCAATCACTCTATTGATGAGAAACTAGCCAAAGAGAACTGAGAATGA 771
||| |||| | ||| |||||||| |||| || |||||||||||||||||||||||||||
Sbjct 743 GAAAAGGAAGTTAGTGATCACTCTGTTGAGGAAAAACTAGCCAAAGAGAACTGAGAATGA 802
Query 772 TAGATTTTTCTTGTGT 787
||||||||||||||||
Sbjct 803 TAGATTTTTCTTGTGT 818
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41593873716
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5