BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485935
Length=1240
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55140.1 | Symbols: | Pectin lyase-like superfamily protein... 2019 0.0
> AT3G55140.1 | Symbols: | Pectin lyase-like superfamily protein
| chr3:20438772-20440429 FORWARD LENGTH=1247
Length=1247
Score = 2019 bits (1093), Expect = 0.0
Identities = 1191/1240 (96%), Gaps = 0/1240 (0%)
Strand=Plus/Plus
Query 1 AAACAGAAACACTTAATACGACGTCGCATAACAACGACCGATGACGTCGCTACCGTACGC 60
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 8 AAACAGAAACACTTGATACGACGTCGCATAACAACGAACGATGACGTCGCTACCGTACGC 67
Query 61 CGATGCCGATTGCAGCCTCAGGGCTTTAGCTGGCCGTGCCGAGGGTTTCGGTCGCTTTGC 120
|||||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||| ||
Sbjct 68 CGATGCCGATTGTAGCCTCAGGGCTTTAGCTGGCCGTGCAGAGGGATTCGGACGCTTCGC 127
Query 121 CGTCGGTGGTCTCCACGGCGATCTCTACGTTGTCACTTCTCTTGCAGATGATGGACCTGG 180
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 128 CGTCGGTGGTCTCCACGGCGATCTCTATGTCGTCACTTCTCTTGCAGATGATGGACCTGG 187
Query 181 GACTCTTCGTGAAGGAGGTAGGAGGAAAGAGCCATTATGGATTGTTTTTGCAGTTTCTGG 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 188 GACTCTTCGTGAAGGAGGTAGGAGGAAAGAGCCGTTATGGATTGTTTTTGCAGTTTCTGG 247
Query 241 AACTATAAATCTGAATTCATACTTGAGTGTATCGTCTTACAAGACGATTGACGGACGAGG 300
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 248 AACTATAAATCTCAATTCATACTTGAGTGTATCGTCTTACAAGACGATTGATGGACGAGG 307
Query 301 ACAGCGGATTAAGCTTACAGGGAAAGGAATAAGATTGAAGGAATGTGAACATATCATCAT 360
||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 ACAACGAATTAAGCTCACAGGGAAAGGAATAAGATTGAAGGAATGTGAACATATCATCAT 367
Query 361 TTGCAATTTGGAGTTTGAAGGTGGTAGAGGTCATGATGTTGATGGTATTCAGATTAAACC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 TTGCAATTTGGAGTTTGAAGGTGGTAGAGGTCATGATGTTGATGGTATTCAGATTAAACC 427
Query 421 CAAGTCTAGACACATTTGGATTGATCGGTGTAGTCTGCGCGATTACGATGATGGGCTTAT 480
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 428 AAAGTCTAGACACATTTGGATTGATCGGTGTAGTCTCCGCGATTACGATGATGGGCTTAT 487
Query 481 TGATATTACTAGACAAAGCACGGATATCACTGTTTCTAGATGTTATTTTGCACAGCATGA 540
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 488 TGATATTACTAGACAAAGCACGGATATTACTGTTTCTAGATGTTATTTTGCACAGCATGA 547
Query 541 CAAGACGATGCTGATTGGAGCTGATCCTTCTCATGTTGAGGATAGATGTATCCGAGTTAC 600
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 548 CAAGACGATGCTGATTGGAGCAGATCCTTCTCATGTTGAGGATAGATGTATCCGAGTGAC 607
Query 601 CATTCACCATTGTTTCTTTGATGGAACCAGGCAGAGACAACCTCGTCTCAGATTTGGAAA 660
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 608 CATTCACCATTGTTTCTTTGATGGAACTAGGCAGAGACAACCTCGTCTCAGATTTGGAAA 667
Query 661 AGTTCATTTGTACAACAACTACACAAGAAACTGGGGAATATATGCTGTTTGTGCTAGTGT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 AGTTCATTTGTACAACAACTACACAAGAAACTGGGGAATATATGCTGTTTGTGCTAGTGT 727
Query 721 AGAAGCGCAGGTATTCTCTCAATGCAATATATACGAAGCAGGAGTGAAGAAGAAAACTTT 780
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 728 AGAAGCGCAGGTGTTCTCTCAATGCAATATATACGAAGCAGGAGTGAAGAAGAAAACTTT 787
Query 781 TGAATACTACTCAGAAAAGGCTGCTGACAAGGAAGAAGCGAGAGCTGGGTTAGTACGATC 840
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 788 TGAATACTACTCAGAAAAGGCTGCTGACAAGGAAGAAGCGAGAACTGGGTTAGTACGATC 847
Query 841 TGAAAATGACTTGTTCTTGAATGGAGCTCAACCATCCTTGTTGACAGGAGCCAGTGAAGA 900
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 848 TGAAAATGACTTGTTCTTGAATGGAGCTCAACCTTCCTTGATGACAGGAGCCAGTGAAGA 907
Query 901 ATGTGTGTTCCATCCAAGCGAGCACTACCCGACATGGACCGTGGAGCCACCATCAGAAAC 960
|||||| ||||||||||| || |||||||| |||||||| ||||||||||||||||||||
Sbjct 908 ATGTGTATTCCATCCAAGTGAACACTACCCAACATGGACTGTGGAGCCACCATCAGAAAC 967
Query 961 TCTCAAGCAAATCATGCAAATTTGTACCGGTTGGCAATCTTTATCCCGTCCTTCTGATCA 1020
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 968 TCTCAAGCAAATCATGCAAATTTGTACCGGTTGGCAATCTTTGTCCCGTCCTTCTGATCA 1027
Query 1021 TGGAGTTCCTAAGTGATAGTTGTGATCCGATTGTTTTCTTGCATATCATATTTCCTTCTT 1080
|||||||||||||| ||||||| ||| | | |||||||||||||||||||||||||||||
Sbjct 1028 TGGAGTTCCTAAGTAATAGTTGCGATTCAAATGTTTTCTTGCATATCATATTTCCTTCTT 1087
Query 1081 TTTCTAGTTATTCAAAAAGTGAATAATGCTTTTGTTCTTCAGCACATTATGTTTACACTA 1140
|||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1088 TTTCTAGTTATTGAAGGAGTGAATAATGCTTTTGTTCTTCAGCACATTATGTTTACAGTA 1147
Query 1141 TGCTCTGTGTGATTTTCTATGCATTTTGCTTCTTTGTGATAAGTAATTGGCTTCTTGAAT 1200
|||| ||||||||||| ||||| |||| |||||||||||| ||||||||||||||||||
Sbjct 1148 TGCTGTGTGTGATTTTTTATGCCTTTTTCTTCTTTGTGATTTGTAATTGGCTTCTTGAAT 1207
Query 1201 GTCTATCCCTGAATCAAATTCTTTATCAGATTTATATCAG 1240
|| |||| ||||||| ||||||||||||||||||||||||
Sbjct 1208 GTATATCACTGAATCGAATTCTTTATCAGATTTATATCAG 1247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60943461630
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5