BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg485940 Length=525 Score E Sequences producing significant alignments: (Bits) Value AT3G55170.1 | Symbols: | Ribosomal L29 family protein | chr3:... 678 0.0 AT2G39390.1 | Symbols: | Ribosomal L29 family protein | chr2:... 492 2e-138 > AT3G55170.1 | Symbols: | Ribosomal L29 family protein | chr3:20452910-20454342 REVERSE LENGTH=647 Length=647 Score = 678 bits (367), Expect = 0.0 Identities = 414/436 (95%), Gaps = 6/436 (1%) Strand=Plus/Plus Query 1 TTACCATAGCAGTGCAAAGAGACTGAAagagagagagagagCTCGAAGACGCCATGGCGA 60 |||| |||||||||||||||||||| || |||||| | |||||||||||||||||||| Sbjct 1 TTACTATAGCAGTGCAAAGAGACTG--AGTCAGAGAG-G-GCTCGAAGACGCCATGGCGA 56 Query 61 GAATCAAGGTTCATGAGTTGAGGGATAAATCAAAATCGGATCTTTCTACTCAATTGAAAG 120 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 57 GAATCAAGGTTCATGAGTTGAGAGATAAATCAAAATCGGATCTTTCTACTCAATTGAAAG 116 Query 121 AACTAAAGGCAGAGCTTGC-TCTCCTCCGTGTGGCTAAGGTCACTGGTGGTGCTCCTAAC 179 || | |||||||||||||| || ||| ||||| ||||||||||||||||||||||||||| Sbjct 117 AATTGAAGGCAGAGCTTGCTTC-CCTACGTGTCGCTAAGGTCACTGGTGGTGCTCCTAAC 175 Query 180 AAGCTCTCAAAGATCAAAGTGGTGAGGAAGTCGATTGCGCAAGTGTTGACTGTGATCTCA 239 |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 176 AAGCTCTCTAAGATCAAAGTGGTGAGGAAGTCGATTGCGCAAGTGTTGACTGTGAGCTCA 235 Query 240 CAGAAACAAAAGTCTGCTCTTAGAGAAGCATACAAGAACAAGAAGTTGTTGCCACTCGAT 299 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 236 CAGAAACAAAAGTCTGCTCTTAGAGAAGCATACAAAAACAAGAAGTTGTTGCCACTCGAT 295 Query 300 CTCCGTCCCAAGAAGACTAGAGCCATCAGAAGGAGACTCACTAAGCACCAGGCGTCGCTA 359 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 296 CTCCGTCCCAAGAAGACTAGAGCCATCAGAAGGAGACTCACTAAACACCAGGCGTCGCTG 355 Query 360 AAGACAGAACGAGAGAAGAAGAAAGAAATGTACTTTCCAATTAGAAAGTATGCCATCAAG 419 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 356 AAGACAGAACGAGAGAAGAAGAAAGACATGTACTTTCCAATTAGAAAGTATGCCATCAAA 415 Query 420 GTTTAATAATCTTTCT 435 ||||||| |||||||| Sbjct 416 GTTTAATTATCTTTCT 431 > AT2G39390.1 | Symbols: | Ribosomal L29 family protein | chr2:16450660-16451878 REVERSE LENGTH=631 Length=631 Score = 492 bits (266), Expect = 2e-138 Identities = 353/395 (89%), Gaps = 6/395 (2%) Strand=Plus/Plus Query 34 agagagagCTCGAAGACGCCATGGCGAGAATCAAGGTTCATGAGTTGAGGGATAAATCAA 93 ||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||| Sbjct 97 AGAGAGAGCTCGAAGACGCAATGGCGAGAATCAAGGTTCATGAGCTGAGGGAGAAATCAA 156 Query 94 AATCGGATCTTTCTACTCAATTGAAAGAACTAAAGGCAGAGCTTGCTCTCCTCCGTGTGG 153 || | |||||||| ||| ||||| ||| | |||||||||||||||||||| ||||| | Sbjct 157 AAGCTGATCTTTCGGGTCAGTTGAAGGAATTTAAGGCAGAGCTTGCTCTCCTTCGTGTCG 216 Query 154 CTAAGGTCACTGGTGGTGCTCCTAACAAGCTCTCAAAGATCAAAGTGGTGAGGAAGTCGA 213 ||||||||||||| ||||||||||| |||||||| |||||||| |||||||||||||||| Sbjct 217 CTAAGGTCACTGGAGGTGCTCCTAATAAGCTCTCTAAGATCAAGGTGGTGAGGAAGTCGA 276 Query 214 TTGCGCAAGTGTTGACTGTGATCTCACAGAAACAAAAGTCTGCTCTT-AGAGAAGCATAC 272 |||| || |||||||| ||||||||||||||||||||||||||| || ||||| |||||| Sbjct 277 TTGCTCAGGTGTTGACAGTGATCTCACAGAAACAAAAGTCTGCT-TTGAGAGAGGCATAC 335 Query 273 AAGAACAAGAAG-TTGTTGCCACTCGATCTCCGTCCCAAGAAGACTAGAGCCATCAGAAG 331 |||||||||||| || ||||| || ||||| |||||||||||||||||||||||||| || Sbjct 336 AAGAACAAGAAGCTT-TTGCCTCTTGATCTTCGTCCCAAGAAGACTAGAGCCATCAGGAG 394 Query 332 GAGACTCACTAAGCACCAGGCGTCGCTAAAGACAGA-ACGAGAGAAGAAGAAAGAAATGT 390 ||||||||||||||| ||||| ||| | |||||||| | | ||||||||||||||||||| Sbjct 395 GAGACTCACTAAGCATCAGGCATCGTTGAAGACAGAGA-GGGAGAAGAAGAAAGAAATGT 453 Query 391 ACTTTCCAATTAGAAAGTATGCCATCAAGGTTTAA 425 |||||||||| || |||||||| || ||||| ||| Sbjct 454 ACTTTCCAATAAGGAAGTATGCTATTAAGGTGTAA 488 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25117073500 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5