BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485940
Length=525
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55170.1 | Symbols: | Ribosomal L29 family protein | chr3:... 678 0.0
AT2G39390.1 | Symbols: | Ribosomal L29 family protein | chr2:... 492 2e-138
> AT3G55170.1 | Symbols: | Ribosomal L29 family protein | chr3:20452910-20454342
REVERSE LENGTH=647
Length=647
Score = 678 bits (367), Expect = 0.0
Identities = 414/436 (95%), Gaps = 6/436 (1%)
Strand=Plus/Plus
Query 1 TTACCATAGCAGTGCAAAGAGACTGAAagagagagagagagCTCGAAGACGCCATGGCGA 60
|||| |||||||||||||||||||| || |||||| | ||||||||||||||||||||
Sbjct 1 TTACTATAGCAGTGCAAAGAGACTG--AGTCAGAGAG-G-GCTCGAAGACGCCATGGCGA 56
Query 61 GAATCAAGGTTCATGAGTTGAGGGATAAATCAAAATCGGATCTTTCTACTCAATTGAAAG 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 57 GAATCAAGGTTCATGAGTTGAGAGATAAATCAAAATCGGATCTTTCTACTCAATTGAAAG 116
Query 121 AACTAAAGGCAGAGCTTGC-TCTCCTCCGTGTGGCTAAGGTCACTGGTGGTGCTCCTAAC 179
|| | |||||||||||||| || ||| ||||| |||||||||||||||||||||||||||
Sbjct 117 AATTGAAGGCAGAGCTTGCTTC-CCTACGTGTCGCTAAGGTCACTGGTGGTGCTCCTAAC 175
Query 180 AAGCTCTCAAAGATCAAAGTGGTGAGGAAGTCGATTGCGCAAGTGTTGACTGTGATCTCA 239
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 176 AAGCTCTCTAAGATCAAAGTGGTGAGGAAGTCGATTGCGCAAGTGTTGACTGTGAGCTCA 235
Query 240 CAGAAACAAAAGTCTGCTCTTAGAGAAGCATACAAGAACAAGAAGTTGTTGCCACTCGAT 299
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 236 CAGAAACAAAAGTCTGCTCTTAGAGAAGCATACAAAAACAAGAAGTTGTTGCCACTCGAT 295
Query 300 CTCCGTCCCAAGAAGACTAGAGCCATCAGAAGGAGACTCACTAAGCACCAGGCGTCGCTA 359
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 296 CTCCGTCCCAAGAAGACTAGAGCCATCAGAAGGAGACTCACTAAACACCAGGCGTCGCTG 355
Query 360 AAGACAGAACGAGAGAAGAAGAAAGAAATGTACTTTCCAATTAGAAAGTATGCCATCAAG 419
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 356 AAGACAGAACGAGAGAAGAAGAAAGACATGTACTTTCCAATTAGAAAGTATGCCATCAAA 415
Query 420 GTTTAATAATCTTTCT 435
||||||| ||||||||
Sbjct 416 GTTTAATTATCTTTCT 431
> AT2G39390.1 | Symbols: | Ribosomal L29 family protein | chr2:16450660-16451878
REVERSE LENGTH=631
Length=631
Score = 492 bits (266), Expect = 2e-138
Identities = 353/395 (89%), Gaps = 6/395 (2%)
Strand=Plus/Plus
Query 34 agagagagCTCGAAGACGCCATGGCGAGAATCAAGGTTCATGAGTTGAGGGATAAATCAA 93
||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||
Sbjct 97 AGAGAGAGCTCGAAGACGCAATGGCGAGAATCAAGGTTCATGAGCTGAGGGAGAAATCAA 156
Query 94 AATCGGATCTTTCTACTCAATTGAAAGAACTAAAGGCAGAGCTTGCTCTCCTCCGTGTGG 153
|| | |||||||| ||| ||||| ||| | |||||||||||||||||||| ||||| |
Sbjct 157 AAGCTGATCTTTCGGGTCAGTTGAAGGAATTTAAGGCAGAGCTTGCTCTCCTTCGTGTCG 216
Query 154 CTAAGGTCACTGGTGGTGCTCCTAACAAGCTCTCAAAGATCAAAGTGGTGAGGAAGTCGA 213
||||||||||||| ||||||||||| |||||||| |||||||| ||||||||||||||||
Sbjct 217 CTAAGGTCACTGGAGGTGCTCCTAATAAGCTCTCTAAGATCAAGGTGGTGAGGAAGTCGA 276
Query 214 TTGCGCAAGTGTTGACTGTGATCTCACAGAAACAAAAGTCTGCTCTT-AGAGAAGCATAC 272
|||| || |||||||| ||||||||||||||||||||||||||| || ||||| ||||||
Sbjct 277 TTGCTCAGGTGTTGACAGTGATCTCACAGAAACAAAAGTCTGCT-TTGAGAGAGGCATAC 335
Query 273 AAGAACAAGAAG-TTGTTGCCACTCGATCTCCGTCCCAAGAAGACTAGAGCCATCAGAAG 331
|||||||||||| || ||||| || ||||| |||||||||||||||||||||||||| ||
Sbjct 336 AAGAACAAGAAGCTT-TTGCCTCTTGATCTTCGTCCCAAGAAGACTAGAGCCATCAGGAG 394
Query 332 GAGACTCACTAAGCACCAGGCGTCGCTAAAGACAGA-ACGAGAGAAGAAGAAAGAAATGT 390
||||||||||||||| ||||| ||| | |||||||| | | |||||||||||||||||||
Sbjct 395 GAGACTCACTAAGCATCAGGCATCGTTGAAGACAGAGA-GGGAGAAGAAGAAAGAAATGT 453
Query 391 ACTTTCCAATTAGAAAGTATGCCATCAAGGTTTAA 425
|||||||||| || |||||||| || ||||| |||
Sbjct 454 ACTTTCCAATAAGGAAGTATGCTATTAAGGTGTAA 488
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25117073500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5