BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485944
Length=1088
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55230.1 | Symbols: | Disease resistance-responsive (dirige... 1526 0.0
AT2G39430.1 | Symbols: | Disease resistance-responsive (dirige... 490 1e-137
> AT3G55230.1 | Symbols: | Disease resistance-responsive (dirigent-like
protein) family protein | chr3:20471791-20472889 FORWARD
LENGTH=1099
Length=1099
Score = 1526 bits (826), Expect = 0.0
Identities = 1011/1096 (92%), Gaps = 29/1096 (3%)
Strand=Plus/Plus
Query 1 AAAAGAACGAACAATGGCTAAAGCTCTTAGCCTAACAATCTTTCTCTTCCTCTTGATAGC 60
||||||| |||||||||| |||||||||||||| |||||||||||||| |||||||||||
Sbjct 21 AAAAGAAAGAACAATGGCCAAAGCTCTTAGCCTTACAATCTTTCTCTTTCTCTTGATAGC 80
Query 61 TTCCAGTGTCCAATCCGCTCGACTTCTCGATGAGGTTCAAACTCAGCCACAATTAGTCCC 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 81 TTCCAATGTCCAATCCGCTCGACTTCTCGATGAGGTTCAAACTCAGCCACAATTAGT-CC 139
Query 121 AGGCGGCCAAATCCCCGCGGTACCGAAAGAGGAAGATGGTAGTCCACAAGCCGTAACAAC 180
| || | ||||||| |||||||||||| |||||||||||||||||| |
Sbjct 140 ---C--CC--A-------GGTACCGGAAGAGGAAGATGATAGTCCACAAGCCGTAAC-A- 183
Query 181 ACAAGCTCCAATACCAATTCCTCTCCCAGGACCCGCGGCGGGAGGACAAGAGCCAATCCT 240
|||| |||||| |||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 184 ACAA-CTCCAACACCAATTCCTCTCCCAGGACCCGCCACGGGAGGACCCGAGCCAATCCT 242
Query 241 AGAGTTCTTTATGCATGACGTGCTAGGCGGGTCACACCCGTCAGCACGTGTGGTTACAGG 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 243 AGAGTTCTTTATGCATGACGTGCTAGGCGGGTCACACCCATCAGCACGTGTGGTTACAGG 302
Query 301 GATAGTAGCACAAACAGAGGTGAACGGGATACCGTTTTCTAAATCCAGCAACAACATTTT 360
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 303 GATAGTAGCACAAACAGAGGTGAATGGAATACCGTTTTCTAAATCCAGCAACAACATTTT 362
Query 361 CCCCGTAGATAACGCAGTGCCGCTTGTGAACGCAAACAGCATCAACAATTTAATCAACCC 420
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 363 CCCAGTAGATAACGCAGTGCCGCTTGTGAACGCAAACAGCATCAACAACTTAATCAATCC 422
Query 421 AAACACAGCTCCACTCCTCACTGGACTTAGTGGCTCTCAAGCCAACACCGTCATTCAAAA 480
|||||||||||||||||| || ||||||||||||||||||||||||||||| || |||||
Sbjct 423 AAACACAGCTCCACTCCTAACAGGACTTAGTGGCTCTCAAGCCAACACCGTAATCCAAAA 482
Query 481 CAGTAACGGTAACTCCCAAGGATCCCTTAGCTCCAACAACCTTCCCTTTGTAACCACGGG 540
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 CAGTAACGGTAACTCTCAAGGATCCCTTAGCTCCAACAACCTTCCCTTTGTAACCACGGG 542
Query 541 TCAGCTCCCTCCTATAGCTGCCCTCCAACAGCTCATGTTTGGCTCTATCACAGTGGTTGA 600
|||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 543 TCAGCTCCCTCCCATAGCTGCCCTCCAACAGCTTATGTTTGGCTCTATCACCGTGGTTGA 602
Query 601 CGATGAGCTCACTGAAGGCCATGAGTTGGGCTCTGCAATCATTGGCAGAGCCCAAGGGTT 660
|||||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 603 CGATGAGCTCACCGAGGGCCATGAGTTGGGCTCTGCGATCATTGGGAGAGCCCAAGGGTT 662
Query 661 TTACCTCGCTAGCTCTTTGGACGGAACTAGCCAGACCCTTTCCTTAACCGTGTTGCTCCA 720
||| ||||||||||||||||| |||||||||||||||||||| || || ||||| |||||
Sbjct 663 TTATCTCGCTAGCTCTTTGGATGGAACTAGCCAGACCCTTTCGTTGACAGTGTTACTCCA 722
Query 721 CGAAGAGCATGATCACCATGACACCCTTGATGATGCGATCAGCTTCTTCGGGGTTCACCG 780
|||||| |||||||| |||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 723 CGAAGATCATGATCATCATGACACCCTTGATGATGCCATCAGCTTCTTTGGGGTTCACCG 782
Query 781 AACCGCTTCTCATGCCTCGCATATCGCTGTTGTGGGTGGGACTGGCAGATTCGAGCATGC 840
||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 783 AACCGCTTCTCATGCGTCGCATATCGCTGTTGTGGGTGGAACTGGGAGATTCGAGCATGC 842
Query 841 TAAAGGGTATGCTGTCGTGGAGACTCTACACAACCAGGAAGACCAACATGTTACTGATGG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 TAAAGGGTATGCTGTCGTGGAGACTCTACACAACCAGGAAGACCAACATGTTACTGATGG 902
Query 901 TCCATGATACCATTCTCCATTTCAGTGTTTATCTTACCTACTACAAAGCTTGAAGAGTAA 960
|| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 903 TC-ATGATACCATTCTCCATTTCAGTGTTTATCTTACATACTACAAAGCTTGAAGAGTTA 961
Query 961 TGGCATTTGTTGTTAA-AAAATTCCTCTGTTTCATATGTATGTTCTTGTTTACTA-GCTT 1018
|||||||||||| || |||||||||||||||| | ||||||||||| |||| || | ||
Sbjct 962 TGGCATTTGTTGA-AAGAAAATTCCTCTGTTTCGTTTGTATGTTCTTCTTTA-TAAGTTT 1019
Query 1019 GATGTGTGGCCTTTATTGTGTTGTGCACGTTTACTGTATTTAAAAA--G----TTAAATG 1072
|||||||| || ||||||||||||||||||||||||| | ||||| | |||||||
Sbjct 1020 AATGTGTGGTCTATATTGTGTTGTGCACGTTTACTGTACTGAAAAAAAGAAAGTTAAATG 1079
Query 1073 AGAATCTTTGTCTTTA 1088
| ||||||||||||||
Sbjct 1080 ACAATCTTTGTCTTTA 1095
> AT2G39430.1 | Symbols: | Disease resistance-responsive (dirigent-like
protein) family protein | chr2:16463347-16464531 FORWARD
LENGTH=1185
Length=1185
Score = 490 bits (265), Expect = 1e-137
Identities = 586/740 (79%), Gaps = 26/740 (4%)
Strand=Plus/Plus
Query 229 AGAGCCAATCCTAGAGTTCTTTATGCATGACGTGCTAGGCGGGTCACACCCGTCAGCACG 288
||||||| | |||||||||||||||||||||||||||||||| || ||||| ||||| ||
Sbjct 324 AGAGCCATTACTAGAGTTCTTTATGCATGACGTGCTAGGCGGATCTCACCCATCAGCTCG 383
Query 289 TGTGGTTACAGGGATAGTAGCACAAACAGAGGTGAACGGGATACCGTTTTCTAAAT-CCA 347
|||||||||||| |||||||| ||||| || |||||||| ||||| || || ||| |||
Sbjct 384 TGTGGTTACAGGTATAGTAGCTCAAACTGAAGTGAACGGAATACCATTCTC-AAAGGCCA 442
Query 348 GCAACAACATTTTCCCCGTAGATAACGCAGTGCCGCTTGTGAACGCAAACAGCATCAACA 407
| |||| ||||||||| || || || | ||| || || || ||| |||||| ||||||||
Sbjct 443 GTAACAGCATTTTCCCGGTTGACAATGGAGTCCCACTGGTCAACTCAAACAACATCAACA 502
Query 408 ATTTAATCAACCCAAACACAGCTCCACTCCTCACTGGACTTAGTGGCT-CTCAAGCCAAC 466
| | || |||||||||||||||||||| ||||| |||||| | || | ||||| || |
Sbjct 503 GTGTCATTAACCCAAACACAGCTCCACTTCTCACCGGACTTGGCGG-TGCTCAAACCTCC 561
Query 467 ACCGTCATTCAAAACAGTAACGGTAACTCCCAAGGAT-CCCTTAGCTCCAACAACCTTCC 525
|||||||| ||||||| |||||| || ||| || ||| |||||||| |||||| || ||
Sbjct 562 ACCGTCATCCAAAACACTAACGGAAATTCC-AACGATGCCCTTAGCGCCAACAGTCT-CC 619
Query 526 CTTT-GTAACCAC-GGGTCAGCTCCCTCCTA-TAGCTGCCCTCCAACAGCTCATGTTTGG 582
|||| ||||| | ||| | || ||||| | ||||||||||| || |||||||| ||
Sbjct 620 CTTTTGTAACTGCCGGGA-ACCTTCCTCCCGGT-GCTGCCCTCCAGCATCTCATGTTCGG 677
Query 583 CTCTATCACAGTGGTTGACGATGAGCTCACTGAAGGCCATGAG-TTGGGCTCTGCAATCA 641
| || || || || || |||||||| || ||| |||| ||| |||| ||| || | |
Sbjct 678 AACCATAACCGTTGTAGATGATGAGCTAACCGAAAGCCACGAGCTTGG-CTCAGCCGTTA 736
Query 642 TTGGCAGAGCCCAAGGGTTTTACCTCGCTAGCTCTTTGGACGGAACTAGCCAGACCCTTT 701
| || ||||| ||||| |||||| | || || || |||||||||| || ||||| ||||
Sbjct 737 TAGGGAGAGCTCAAGGCTTTTACTTGGCCAGTTCCCTGGACGGAACAAGTCAGACTCTTT 796
Query 702 C-CTTAACCGTGTTGCTCCACGAAGAGCATGATCACCATGACACCCTT-GATGATGCGAT 759
| || | | || ||||| || | |||||||| || |||||||| || || ||||| ||
Sbjct 797 CTCTGA-CTGTATTGCTACATGGTGAGCATGACCAGCATGACACT-TTAGACGATGCCAT 854
Query 760 CAGCTTCTTCGGGGTTCACCGAACCGCTTCTCATGCCTCGCATATCGCTGTTGTGGGTGG 819
|| ||||| ||||||||| ||||||| ||||||||||| || ||||| ||| | || ||
Sbjct 855 TAGTTTCTTTGGGGTTCACAGAACCGCCTCTCATGCCTCCCAGATCGCGGTTATAGGCGG 914
Query 820 GACTGGCA-GATTCGAGCATGCTAAAGGGTATGCTGTCGTGGAGACTCTACACAACCAGG 878
||| || | | || || || || ||||||||||| | ||||| ||||| || |||||||
Sbjct 915 GACCGGGAAGTTT-GAACACGCCAAAGGGTATGCCATAGTGGAAACTCTGCATAACCAGG 973
Query 879 A-AGACCAACATGTTACTGATGGTCCATGATACCATTCTCCATTTCAGTGTTTATCTTAC 937
| | |||| ||| | |||||||||| | || ||||| |||||||||||||| || |||||
Sbjct 974 ACA-ACCAGCATATCACTGATGGTCAA-GACACCATCCTCCATTTCAGTGTATACCTTAC 1031
Query 938 CTACTACAAAGCTTGAAGAG 957
|||| | || ||||||||||
Sbjct 1032 CTAC-A-AA-GCTTGAAGAG 1048
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53312978790
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5