BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485946
Length=1824
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55260.1 | Symbols: HEXO1, ATHEX2 | beta-hexosaminidase 1 | ... 2778 0.0
> AT3G55260.1 | Symbols: HEXO1, ATHEX2 | beta-hexosaminidase 1
| chr3:20489248-20493076 FORWARD LENGTH=1913
Length=1913
Score = 2778 bits (1504), Expect = 0.0
Identities = 1696/1785 (95%), Gaps = 28/1785 (2%)
Strand=Plus/Plus
Query 1 GAACAATCCTCCGTTGACCAAACACTCTTTTCGAAAATGTCACCGAATCTTCTTCGTCTT 60
|||||||||||| |||||| || | |||||||||||||| |||||||||||||||||
Sbjct 39 GAACAATCCTCCATTGACCCAA-A----TTTCGAAAATGTCAACGAATCTTCTTCGTCTT 93
Query 61 CTTTTCCTATTGATGATATTCATCTCTTTATCTATCACTTCATCTCTGTCAACTCCGTCG 120
|| ||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 94 ATTCTCC---------TATTCATCACTTTATCTATCACTTCATCTCTGTCAACTCCGTCG 144
Query 121 CCGGCTGATTCTCCTCCTTATCTATGGCCGTTGCCGGCAGAGTTTTCGTTCGGAAACGAG 180
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 145 CCGGCTGATTCTCCTCCTTATCTATGGCCGTTACCGGCGGAGTTTTCGTTCGGAAACGAA 204
Query 181 ACACTCTCGGTGGATCCGGCCTTGACTCTAATCATAGCTGGAAATGGCGGTGGATCTCCG 240
|| |||||||||||||| || ||||||||||| |||||||||||||||||||||||| |
Sbjct 205 ACGCTCTCGGTGGATCCCACCGTGACTCTAATCGTAGCTGGAAATGGCGGTGGATCTCTG 264
Query 241 ATTGTTAGAGCTGCGTTTGATAGGTATATGGGTATAATCTTTAAACACGCTTCTGGTAGA 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 265 ATTATTAGAGCTGCGTTTGATAGGTATATGGGTATAATCTTTAAACACGCTTCTGGTAGA 324
Query 301 GGTTCTCTATTGGCGAGAATTAGATTTCTGAGAATGGTTGAGTATGATATCACTTCTTTG 360
|||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 325 GGTTCTCTATTGTCGAGGATTAGATTTCTGAAAATGGTTGAGTATGATATCACTTCTTTG 384
Query 361 AAGATCGTTGTTCACTCTGATTCTGAGGAGCTTCAATTGGGTGTGGATGAGAGTTATACA 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 385 AAGATCGTTGTTCATTCTGATTCTGAGGAGCTTCAATTGGGTGTGGATGAGAGTTATACA 444
Query 421 TTGATGGTTTCGAAGAAGAACGAGCAATCGATTGTTGGAGCTGCCACGATCGAGGCTAAT 480
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 445 TTGATGGTGTCGAAGAAGAACGAGCAATCGATTGTTGGAGCAGCCACGATCGAGGCTAAT 504
Query 481 ACAGTCTATGGTGCACTTAGAGGATTGGAGACATTTAGCCAATTGTGTGCCTTTGATTAT 540
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 505 ACAGTTTATGGTGCACTTAGAGGATTGGAGACATTTAGCCAGTTGTGTGCCTTTGATTAT 564
Query 541 CTAACCAAATCTGTGCAAATATATAAAGCACCCTGGTATATTCAAGATAAACCTAGATTC 600
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 565 ATAACCAAATCTGTGCAAATATATAAAGCACCATGGTATATTCAAGATAAACCTAGATTT 624
Query 601 GGATACCGCGGTCTGCTAATAGATACATCAAGACATTTTTTACCAATTGATGTTATTAAG 660
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 625 GGATACCGCGGTCTGCTGATAGATACATCAAGACATTATTTACCAATTGATGTTATTAAG 684
Query 661 CAAATAATCGAATCCATGTCCTTCGCCAAACTTAATGTCCTGCATTGGCACATTGTAGAC 720
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 685 CAAATAATCGAATCCATGTCCTTTGCCAAACTTAATGTCCTGCATTGGCACATTGTAGAC 744
Query 721 GAGCAATCATTTCCTTTTGAAACTCCTACATATCCTAATTTGTGGAAAGGAGCTTATTCG 780
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 745 GAGCAATCATTTCCTCTTGAAACTCCTACATATCCTAATTTGTGGAAAGGAGCTTATTCG 804
Query 781 AGATGGGAACGTTACACAGTTGAAGATGCCTCTGAGATTGTCAGGTTTGCCAAAATGAGA 840
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 805 AGATGGGAACGTTATACAGTTGAGGATGCCTCTGAGATTGTCAGGTTTGCCAAAATGAGA 864
Query 841 GGTATTAATGTCATGGCTGAAGTAGATGTCCCTGGCCATGCGGAATCGTGGGGAACTGGA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 865 GGTATTAATGTCATGGCTGAAGTAGATGTCCCTGGCCATGCGGAATCGTGGGGAACTGGA 924
Query 901 TACCCTGATCTTTGGCCGTCTCTGTCTTGCCGAGAGCCCCTTGATGTTACTAAAAATTTT 960
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 925 TACCCTGATCTTTGGCCGTCTCTGTCTTGCCGAGAGCCCCTTGATGTTACTAAAAACTTT 984
Query 961 ACATTCGATGTGATTTCTGGCATTTTGGCAGATATGAGAAAGATATTTCCATTTGAGCTT 1020
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 985 ACATTCGATGTGATTTCTGGCATTTTAGCAGATATGAGAAAGATATTCCCATTTGAGCTT 1044
Query 1021 TTCCACTTGGGTGGTGATGAAGTTAATACAGATTGCTGGAAAAACACAACTCATGTTAAA 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1045 TTCCACTTGGGTGGTGATGAAGTTAATACAGATTGCTGGAAAAACACAACTCATGTTAAA 1104
Query 1081 GAATGGCTTCAGGGTCGCAACTTCACTACTAAGGACGCATATAAATACTTTGTACTCCGA 1140
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1105 GAATGGCTTCAGGGTCGCAACTTCACGACTAAGGACGCATATAAATACTTTGTACTCCGA 1164
Query 1141 GCGCAACAGATAGCTATATCGAAAAATTGGACACCTGTCAACTGGGAAGAAACCTTCAGT 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1165 GCGCAACAGATAGCTATATCGAAAAATTGGACACCTGTCAACTGGGAAGAAACCTTCAGT 1224
Query 1201 TCCTTTGGAAAAGATCTTGATCCGGGGACTGTGATTCAAAACTGGCTAGTGTCTGATATA 1260
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1225 TCCTTTGGAAAAGATCTTGATCCGCGGACTGTGATTCAAAACTGGCTAGTGTCTGATATA 1284
Query 1261 TGTCAAAAAGCGGTAGCAAAAGGATTCAGGTGCATTTTCAGTAACCAAGGATATTGGTAT 1320
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1285 TGTCAAAAAGCAGTAGCAAAAGGATTCAGGTGCATTTTCAGTAACCAAGGATATTGGTAC 1344
Query 1321 CTCGACCATCTAGATGTGCCGTGGGACGAGGTTTATAACACCGAGCCTCTAAATGGAATC 1380
||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1345 CTCGACCATTTAGATGTTCCGTGGGAAGAGGTTTATAACACCGAGCCTCTAAATGGAATC 1404
Query 1381 GAGGATCCTTCTCTCCAAAAGCTGGTTATCGGAGGAGAAGTTTGCATGTGGGGTGAAACA 1440
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1405 GAGGATCCTTCTCTCCAAAAGCTTGTCATCGGAGGAGAAGTTTGCATGTGGGGTGAAACA 1464
Query 1441 GCTGATACATCCGTTGTCCTTCAGACCATTTGGCCGCGTGCTGCAGCAGCTGCAGAACGG 1500
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1465 GCTGATACATCCGTTGTCCTTCAGACCATTTGGCCTCGTGCTGCAGCAGCTGCAGAACGG 1524
Query 1501 ATGTGGAGCACCAGAGAGGCCGTGTCAAAGGGGAACATAACGTTAACTGCATTGCCACGT 1560
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1525 ATGTGGAGCACCAGAGAGGCCGTGTCAAAGGGGAACATAACGTTAACCGCATTGCCACGT 1584
Query 1561 CTACACTATTTCAGATGTCTACTGAATAACCGCGGAGTTCCAGCAGCTCCAGTCGATAAC 1620
|||||||| ||||||||||||||||||||||| || |||||||| |||||||| ||||||
Sbjct 1585 CTACACTACTTCAGATGTCTACTGAATAACCGTGGCGTTCCAGCGGCTCCAGTGGATAAC 1644
Query 1621 TTTTACGCAAGAAGACCGCCATCGGGACCTGGTTCTTGCTATGCTCAGTGATCCAAAACA 1680
||||||||| ||||||| || | ||||||||| ||||||||||||||||||||||||||
Sbjct 1645 TTTTACGCACGAAGACCCCCCTTGGGACCTGGCTCTTGCTATGCTCAGTGATCCAAAACG 1704
Query 1681 TTTCTTCTCATTGTACTATATGTAATGTACGTGTCTCATCTGAAATCTGGTTGT----T- 1735
|||||||||||||||||||||||||||| | | | |||||||||||||||| |
Sbjct 1705 TTTCTTCTCATTGTACTATATGTAATGT-C-T--CG--TCTGAAATCTGGTTGTCACGTT 1758
Query 1736 GCATTTTCTATTCTAAATTGTG--CTTCTCAATT-ACTCAAATCA 1777
|| |||||| |||||||||||| |||||||||| ||||||||||
Sbjct 1759 GCTTTTTCTGTTCTAAATTGTGTGCTTCTCAATTTACTCAAATCA 1803
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90260579910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5