BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg485946 Length=1824 Score E Sequences producing significant alignments: (Bits) Value AT3G55260.1 | Symbols: HEXO1, ATHEX2 | beta-hexosaminidase 1 | ... 2778 0.0 > AT3G55260.1 | Symbols: HEXO1, ATHEX2 | beta-hexosaminidase 1 | chr3:20489248-20493076 FORWARD LENGTH=1913 Length=1913 Score = 2778 bits (1504), Expect = 0.0 Identities = 1696/1785 (95%), Gaps = 28/1785 (2%) Strand=Plus/Plus Query 1 GAACAATCCTCCGTTGACCAAACACTCTTTTCGAAAATGTCACCGAATCTTCTTCGTCTT 60 |||||||||||| |||||| || | |||||||||||||| ||||||||||||||||| Sbjct 39 GAACAATCCTCCATTGACCCAA-A----TTTCGAAAATGTCAACGAATCTTCTTCGTCTT 93 Query 61 CTTTTCCTATTGATGATATTCATCTCTTTATCTATCACTTCATCTCTGTCAACTCCGTCG 120 || ||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 94 ATTCTCC---------TATTCATCACTTTATCTATCACTTCATCTCTGTCAACTCCGTCG 144 Query 121 CCGGCTGATTCTCCTCCTTATCTATGGCCGTTGCCGGCAGAGTTTTCGTTCGGAAACGAG 180 |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 145 CCGGCTGATTCTCCTCCTTATCTATGGCCGTTACCGGCGGAGTTTTCGTTCGGAAACGAA 204 Query 181 ACACTCTCGGTGGATCCGGCCTTGACTCTAATCATAGCTGGAAATGGCGGTGGATCTCCG 240 || |||||||||||||| || ||||||||||| |||||||||||||||||||||||| | Sbjct 205 ACGCTCTCGGTGGATCCCACCGTGACTCTAATCGTAGCTGGAAATGGCGGTGGATCTCTG 264 Query 241 ATTGTTAGAGCTGCGTTTGATAGGTATATGGGTATAATCTTTAAACACGCTTCTGGTAGA 300 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 265 ATTATTAGAGCTGCGTTTGATAGGTATATGGGTATAATCTTTAAACACGCTTCTGGTAGA 324 Query 301 GGTTCTCTATTGGCGAGAATTAGATTTCTGAGAATGGTTGAGTATGATATCACTTCTTTG 360 |||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||| Sbjct 325 GGTTCTCTATTGTCGAGGATTAGATTTCTGAAAATGGTTGAGTATGATATCACTTCTTTG 384 Query 361 AAGATCGTTGTTCACTCTGATTCTGAGGAGCTTCAATTGGGTGTGGATGAGAGTTATACA 420 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 385 AAGATCGTTGTTCATTCTGATTCTGAGGAGCTTCAATTGGGTGTGGATGAGAGTTATACA 444 Query 421 TTGATGGTTTCGAAGAAGAACGAGCAATCGATTGTTGGAGCTGCCACGATCGAGGCTAAT 480 |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 445 TTGATGGTGTCGAAGAAGAACGAGCAATCGATTGTTGGAGCAGCCACGATCGAGGCTAAT 504 Query 481 ACAGTCTATGGTGCACTTAGAGGATTGGAGACATTTAGCCAATTGTGTGCCTTTGATTAT 540 ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 505 ACAGTTTATGGTGCACTTAGAGGATTGGAGACATTTAGCCAGTTGTGTGCCTTTGATTAT 564 Query 541 CTAACCAAATCTGTGCAAATATATAAAGCACCCTGGTATATTCAAGATAAACCTAGATTC 600 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 565 ATAACCAAATCTGTGCAAATATATAAAGCACCATGGTATATTCAAGATAAACCTAGATTT 624 Query 601 GGATACCGCGGTCTGCTAATAGATACATCAAGACATTTTTTACCAATTGATGTTATTAAG 660 ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| Sbjct 625 GGATACCGCGGTCTGCTGATAGATACATCAAGACATTATTTACCAATTGATGTTATTAAG 684 Query 661 CAAATAATCGAATCCATGTCCTTCGCCAAACTTAATGTCCTGCATTGGCACATTGTAGAC 720 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 685 CAAATAATCGAATCCATGTCCTTTGCCAAACTTAATGTCCTGCATTGGCACATTGTAGAC 744 Query 721 GAGCAATCATTTCCTTTTGAAACTCCTACATATCCTAATTTGTGGAAAGGAGCTTATTCG 780 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 745 GAGCAATCATTTCCTCTTGAAACTCCTACATATCCTAATTTGTGGAAAGGAGCTTATTCG 804 Query 781 AGATGGGAACGTTACACAGTTGAAGATGCCTCTGAGATTGTCAGGTTTGCCAAAATGAGA 840 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 805 AGATGGGAACGTTATACAGTTGAGGATGCCTCTGAGATTGTCAGGTTTGCCAAAATGAGA 864 Query 841 GGTATTAATGTCATGGCTGAAGTAGATGTCCCTGGCCATGCGGAATCGTGGGGAACTGGA 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 865 GGTATTAATGTCATGGCTGAAGTAGATGTCCCTGGCCATGCGGAATCGTGGGGAACTGGA 924 Query 901 TACCCTGATCTTTGGCCGTCTCTGTCTTGCCGAGAGCCCCTTGATGTTACTAAAAATTTT 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 925 TACCCTGATCTTTGGCCGTCTCTGTCTTGCCGAGAGCCCCTTGATGTTACTAAAAACTTT 984 Query 961 ACATTCGATGTGATTTCTGGCATTTTGGCAGATATGAGAAAGATATTTCCATTTGAGCTT 1020 |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct 985 ACATTCGATGTGATTTCTGGCATTTTAGCAGATATGAGAAAGATATTCCCATTTGAGCTT 1044 Query 1021 TTCCACTTGGGTGGTGATGAAGTTAATACAGATTGCTGGAAAAACACAACTCATGTTAAA 1080 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1045 TTCCACTTGGGTGGTGATGAAGTTAATACAGATTGCTGGAAAAACACAACTCATGTTAAA 1104 Query 1081 GAATGGCTTCAGGGTCGCAACTTCACTACTAAGGACGCATATAAATACTTTGTACTCCGA 1140 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1105 GAATGGCTTCAGGGTCGCAACTTCACGACTAAGGACGCATATAAATACTTTGTACTCCGA 1164 Query 1141 GCGCAACAGATAGCTATATCGAAAAATTGGACACCTGTCAACTGGGAAGAAACCTTCAGT 1200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1165 GCGCAACAGATAGCTATATCGAAAAATTGGACACCTGTCAACTGGGAAGAAACCTTCAGT 1224 Query 1201 TCCTTTGGAAAAGATCTTGATCCGGGGACTGTGATTCAAAACTGGCTAGTGTCTGATATA 1260 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1225 TCCTTTGGAAAAGATCTTGATCCGCGGACTGTGATTCAAAACTGGCTAGTGTCTGATATA 1284 Query 1261 TGTCAAAAAGCGGTAGCAAAAGGATTCAGGTGCATTTTCAGTAACCAAGGATATTGGTAT 1320 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1285 TGTCAAAAAGCAGTAGCAAAAGGATTCAGGTGCATTTTCAGTAACCAAGGATATTGGTAC 1344 Query 1321 CTCGACCATCTAGATGTGCCGTGGGACGAGGTTTATAACACCGAGCCTCTAAATGGAATC 1380 ||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 1345 CTCGACCATTTAGATGTTCCGTGGGAAGAGGTTTATAACACCGAGCCTCTAAATGGAATC 1404 Query 1381 GAGGATCCTTCTCTCCAAAAGCTGGTTATCGGAGGAGAAGTTTGCATGTGGGGTGAAACA 1440 ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 1405 GAGGATCCTTCTCTCCAAAAGCTTGTCATCGGAGGAGAAGTTTGCATGTGGGGTGAAACA 1464 Query 1441 GCTGATACATCCGTTGTCCTTCAGACCATTTGGCCGCGTGCTGCAGCAGCTGCAGAACGG 1500 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1465 GCTGATACATCCGTTGTCCTTCAGACCATTTGGCCTCGTGCTGCAGCAGCTGCAGAACGG 1524 Query 1501 ATGTGGAGCACCAGAGAGGCCGTGTCAAAGGGGAACATAACGTTAACTGCATTGCCACGT 1560 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1525 ATGTGGAGCACCAGAGAGGCCGTGTCAAAGGGGAACATAACGTTAACCGCATTGCCACGT 1584 Query 1561 CTACACTATTTCAGATGTCTACTGAATAACCGCGGAGTTCCAGCAGCTCCAGTCGATAAC 1620 |||||||| ||||||||||||||||||||||| || |||||||| |||||||| |||||| Sbjct 1585 CTACACTACTTCAGATGTCTACTGAATAACCGTGGCGTTCCAGCGGCTCCAGTGGATAAC 1644 Query 1621 TTTTACGCAAGAAGACCGCCATCGGGACCTGGTTCTTGCTATGCTCAGTGATCCAAAACA 1680 ||||||||| ||||||| || | ||||||||| |||||||||||||||||||||||||| Sbjct 1645 TTTTACGCACGAAGACCCCCCTTGGGACCTGGCTCTTGCTATGCTCAGTGATCCAAAACG 1704 Query 1681 TTTCTTCTCATTGTACTATATGTAATGTACGTGTCTCATCTGAAATCTGGTTGT----T- 1735 |||||||||||||||||||||||||||| | | | |||||||||||||||| | Sbjct 1705 TTTCTTCTCATTGTACTATATGTAATGT-C-T--CG--TCTGAAATCTGGTTGTCACGTT 1758 Query 1736 GCATTTTCTATTCTAAATTGTG--CTTCTCAATT-ACTCAAATCA 1777 || |||||| |||||||||||| |||||||||| |||||||||| Sbjct 1759 GCTTTTTCTGTTCTAAATTGTGTGCTTCTCAATTTACTCAAATCA 1803 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 90260579910 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5