BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485956
Length=921
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55330.1 | Symbols: PPL1 | PsbP-like protein 1 | chr3:205138... 1393 0.0
> AT3G55330.1 | Symbols: PPL1 | PsbP-like protein 1 | chr3:20513825-20515351
REVERSE LENGTH=975
Length=975
Score = 1393 bits (754), Expect = 0.0
Identities = 849/892 (95%), Gaps = 18/892 (2%)
Strand=Plus/Plus
Query 1 ACTGAGAAAGAAGCGAATCCATAAGAGACGACAACAAAAGATC--TCTCTATACCACATA 58
||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1 ACTGAGAAAGAAGTGAATCCATAAGAGAAGACAACAAAAGATCTATCTCTATACCACATA 60
Query 59 TTACAC-TTTTCTCCAATGGCTTCTCTGAAGCTTTCACCTTCTTCTCCAATCTCCATCTC 117
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 TTACACTTTTTCTCCAATGGCTTCTCTGAAGCTTTCACCTTCTTCTCCAATCTCCATTTC 120
Query 118 TAAGGTT-G-GTG-TTCCTTGCTCTAAGAAAGGACTTTCATTTCTTGTAAAAGCTGAGCA 174
||||||| | ||| |||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 121 TAAGGTTGGTGTGATTCCTTCCTCTAAGAAAGGACTTTCATTTCTTGTAAAAGCAGAGCA 180
Query 175 CCATTCTTCGTCTTCCTCTTCTCATCTTCAAGATAAATGTCAGAGACGTCTGATTGTAAC 234
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCATTCCTCGTCTTCTTCTTCTCATCTTCAAGATAAATGTCAGAGACGTCTGATTGTAAC 240
Query 235 ATTTGGTGTTGTTGCTCCTTGGATCTCATTGCTTAGTAGAGCTCCACTATCATTTGCTGC 294
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 241 ATTTGGTGTTGTTGCTCCTTGGATCTCATTGCTTAGTAGAGCTCCATTATCATTTGCTGC 300
Query 295 AGAAAGCAAAAAAGGATTTCTTGCTGTCTCTGACAATAAAGATGCATATTCGTTTCTCTA 354
|||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||
Sbjct 301 AGAAAGCAAAAAAGGATTCCTTGCTGTCTCTGACAATAAAGATGCTTATGCGTTTCTCTA 360
Query 355 TCCATTTGGTTGGCAGGAAGTTGTGATTGAGGGTCAAGACAAGGTATACAAAGATGTGAT 414
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 361 TCCATTTGGTTGGCAGGAAGTTGTGATTGAAGGTCAAGATAAGGTATACAAAGATGTGAT 420
Query 415 TGAGCCTTTAGAAAGCGTTAGTGTCAATTTGATCCCAACTAGCAAACAGACTATTAAAGA 474
||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 421 TGAGCCTTTAGAAAGTGTTAGTGTGAATTTGGTCCCAACTAGCAAACAGACTATTAAAGA 480
Query 475 ATTTGGCCCTCCCAAGCAGATAGCTGAAACACTGATAAAGAAAGTTTTGGCACCTCCAAA 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATTTGGCCCTCCCAAGCAGATAGCTGAAACACTGATAAAGAAAGTTTTGGCACCTCCAAA 540
Query 535 TCAGAAAACAACCCTTATTGATGCATCAGAGCATGATGTCGATGGGAAGACTTATTACCA 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 541 TCAGAAAACAACCCTTATTGATGCATCAGAGCATGATGTCGATGGGAAGACTTATTATCA 600
Query 595 GTTTGAGTTCACTGTTCAGGCTAGAAACTACACCCGCCATGCTCTGGGTACAATCACGGT 654
|||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||
Sbjct 601 GTTTGAGTTCACTGTTCAAGCTAGAAACTACACTCGCCATGCTCTGGGTACCATCACGGT 660
Query 655 TTTCAACGGAAAATTCTACACACTGACGACGGGAGCGAATGAGAGGAGGTGGGAGAAGAT 714
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 661 TTTCAACGGAAACTTCTACACACTGACGACGGGAGCGAATGAAAGGAGGTGGGAGAAGAT 720
Query 715 GAAAGATAGGCTTCACACTGTGGTAGATTCCTTCAAGATCACTGTTTGAAAATA----A- 769
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 721 GAAAGATAGGCTTCACACTGTGGTAGATTCCTTCAAGATCACTGTTTGAAAATACTGTAA 780
Query 770 TCAAGTTTGGTTTGGTTATCTCTTGTTTTGAAAAAGGCCATTTTCTTGTATTTTTGTCCA 829
||||||||| ||||||| |||||||||||| |||||| ||||||||||||||||
Sbjct 781 TCAAGTTTGCTTTGGTTGTCTCTTGTTTTGC------CCATTT-CTTGTATTTTTGTCCA 833
Query 830 TTCTTCTTCTCTCTTTCCCTTAACAATATTCTTTTCCTGTAAGAGAGATTCA 881
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 TTCTTCTTCTCTCTTTCCCTTAACAATATTCTTTTCCTGTAAGAGAGATTCA 885
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45009795712
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5