BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485957
Length=1939
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55340.1 | Symbols: PHIP1 | phragmoplastin interacting prote... 2712 0.0
> AT3G55340.1 | Symbols: PHIP1 | phragmoplastin interacting protein
1 | chr3:20515647-20518059 FORWARD LENGTH=2046
Length=2046
Score = 2712 bits (1468), Expect = 0.0
Identities = 1718/1837 (94%), Gaps = 24/1837 (1%)
Strand=Plus/Plus
Query 1 GTTTTTGGCGGTCTCAGTGAAGAAGATGGTGCTGTCGAACAAGAAGCTGAAGCAGAGGAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTTTTTGGCGGTCTCAGTGAAGAAGATGGTGCTGTCGAACAAGAAGCTGAAGCAGAGGAT 60
Query 61 TCGACAAGATTTGGTTAAATCACTATCTGTCTCTGTAGCCGAAACCAATCCACAATCTCA 120
|||||||||||||| | |||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 61 TCGACAAGATTTGGCTGAATCACTATCTGTCTCTGTATCCGAAACAAATCCACAATCTCA 120
Query 121 GTCTCTGAAATTGCTCCTTGATTCATCTAGCCACAAACCCAGATTGTCCAAGAGAGAGAA 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 121 GTCTCTGAAATTGCTCCTTGATTCATCTAGCCACAAACCCAGATTGTCGAAGAGAGAGAA 180
Query 181 ACGAAGAAATTCCGAAACTTTCGCTGGAGAAGACGACGGAGTCACAGAGAATGAAGTTGG 240
||||||||||| ||||||||||||| |||||||||||| | ||| |||||||||||||||
Sbjct 181 ACGAAGAAATTGCGAAACTTTCGCTAGAGAAGACGACGAAATCAGAGAGAATGAAGTTGG 240
Query 241 GATTGGTGGGTCAACG-GAGAAAACTGATACGAAGATTATAAAGAAGAGAAAGAGAGACG 299
|| ||||||||||| | ||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 241 GAATGGTGGGTCAA-GCGAGAAGACTGATACGAAGATTAAAAAGAAGAGAAAGAGAGACG 299
Query 300 ATACTGTGGAGGTCGACGAATTagaaggagatgaagtaactaaggaagaggaaaaacccc 359
|| ||||||| |||||||| |||||||||||||||| ||||||||||||| |||||||||
Sbjct 300 ATGCTGTGGAAGTCGACGAGTTAGAAGGAGATGAAGGAACTAAGGAAGAGCAAAAACCCC 359
Query 360 agaagaagaaaaagaagaagaagaagaagaagaagagaaaggtaaacaaaacgccaaaga 419
|||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AGAAGAAG--AAA-AATAAGAAGAAGAAGAAGAAGAGAAAGGTAAACAAAACGCCAAAGA 416
Query 420 aggctgaggaaggaaatgtagaagagaaggTTAAGGTAGAAGAGATTCAAGTTAATAATA 479
||||||||||||| ||||||||||||||||| ||||||||||||||| ||| | |||||
Sbjct 417 AGGCTGAGGAAGGCAATGTAGAAGAGAAGGTGAAGGTAGAAGAGATTGAAG-T--TAATA 473
Query 480 CAGACAATAAAGAAGAAGATGGGGTTGTTCCTAAAAAGTTATATGTTGGGGGTATTCCTT 539
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 474 CAGACAATAAAGAAGAAGATGGGGTTGTTCCTAACAAGTTATATGTTGGGGGTATTCCTT 533
Query 540 ATCAGAGTACAGAAGATGAGATTCGTAGCTACTTCAGAAGCTGTGGAGTCATCACTAAAG 599
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 534 ATCAGAGTACAGAAGATGAGATTCGTAGCTACTTTAGAAGCTGTGGAGTCATCATTAAAG 593
Query 600 TTGATTGCAAGATGCGTCCTGAGGATGGTGCTTTCAGTGGTATTGCCTTCATCACTTTTG 659
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 594 TTGATTGCAAGATGCGTCCTGAAGATGGGGCTTTCAGTGGTATTGCCTTCATCACTTTTG 653
Query 660 AAACTGAAGAAGGTGCAAAACGTGCTTTGGCTTTTGATAGAGCTGCAATGGGTGATCGAT 719
| |||||||| || |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 654 ACACTGAAGATGGCGCAAAACGTGCTTTGGCTTTTGATAGAGCTGCTATGGGTGATCGAT 713
Query 720 TTTTGACGATCCAGCAATATGTGAAAACCACCACCCCTTCCCTTCCCAGAAGGAAAACAT 779
|||||| ||||||||||| ||||||||||||||||||||| |||| |||||||||||||
Sbjct 714 ATTTGACAATCCAGCAATACGTGAAAACCACCACCCCTTCCATTCCAAGAAGGAAAACAT 773
Query 780 CTTCTGGCTTCGCTCCAGAAATGGTGGATGGCTATAACAGGGTATACATTGGGAATTTAG 839
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 CTTCTGGTTTCGCTCCAGAAATGGTGGATGGCTATAACAGGGTATACATTGGGAATTTAG 833
Query 840 CCTGGGACACAACAGAGCGTGACATACGGAAACTCTTCTCTGACTGCGTAATTAACTCTG 899
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 834 CCTGGGACACAACAGAGCGTGACATACGGAAGCTCTTCTCTGACTGCGTAATAAACTCTG 893
Query 900 TGCGGTTGGGCAAAAACAAAGAAACAGGGGAGTTTAAAGGGTACGCGCATGTGGATTTCA 959
|||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 894 TGCGGTTGGGTAAAAACAAAGAAACAGGAGAGTTTAAAGGGTATGCGCATGTGGATTTCA 953
Query 960 AGGATAGCGTGTCTGTGGCGATCGCGCTGAAGCTGGATCAGCAGGTTATTTGCGGAAGAC 1019
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 954 AGGATAGTGTGTCTGTGGCGATTGCGCTGAAGCTGGATCAGCAGGTTATTTGCGGAAGAC 1013
Query 1020 CTGTCAAGATATGTTGTGCACTTAAAGACAGACCAGCTACAGATCATACACCTGGTGAAA 1079
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1014 CTGTCAAGATATGTTGTGCACTTAAAGACAGACCAGCTACTGATCATACACCTGGTGAAA 1073
Query 1080 CGAACAATGTTGGTTCGTACAACATCGAAGAGACTTATGCTGCTGCTGATCCAATACCGG 1139
||||||||| ||||||||||||||| ||||| ||||||||||||||||||||| ||||||
Sbjct 1074 CGAACAATGCTGGTTCGTACAACATGGAAGATACTTATGCTGCTGCTGATCCAGTACCGG 1133
Query 1140 CTTTAGCTGGG-GCTAACGAAGTTAATGATGGAAACTACTTTACAACCACAGTTAGCAGC 1198
||||||||||| | || ||||||| |||| |||||||||||| |||| || |||||||||
Sbjct 1134 CTTTAGCTGGGCG-TAGCGAAGTTGATGACGGAAACTACTTTGCAACTACGGTTAGCAGC 1192
Query 1199 GGTAAGATCAAAAGGAGGAACTGTT-TCGAGTGTGGCGAAAAGGGTCATCTTTCTA-ATA 1256
||||| ||||||||||| ||||| | |||||||| ||||||||||||||||||| |
Sbjct 1193 AGTAAGGTCAAAAGGAGGGTCTGTTAT-GAGTGTGGAGAAAAGGGTCATCTTTCTACAGC 1251
Query 1257 CTTGTCCCAAAAAGCTTCAAAATGCTGATGATCAGGCAAACTCAAAGCTGGGTCAAGAGA 1316
|| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1252 CT-GTCCCATAAAGCTTCAAAAGGCTGATGATCAGGCAAACTCAAAGCTGGGTCAAGAGA 1310
Query 1317 CTGTCGATGCTGGACCGGCTATGCAAAGCTATGCTCTTCAAAAGAATATTGGTGATTCTT 1376
|||| |||| | ||||||||||||||||||||| ||||| |||||||| |||||||||||
Sbjct 1311 CTGTTGATGGTAGACCGGCTATGCAAAGCTATGGTCTTCCAAAGAATAGTGGTGATTCTT 1370
Query 1377 ACTACATGAATGAGACATACGCTGCTACAAATGAAACTAATGATGGAGGCT--T-AGCAT 1433
||||||||||||||||||||||| |||||||||||||| || ||||||| | | |||||
Sbjct 1371 ACTACATGAATGAGACATACGCTTCTACAAATGAAACTTATAATGGAGGATACTCAGCAT 1430
Query 1434 CCGCTGTTAGCACTACTGGTAAGGTCAAAAGGAGGAACTGTTACGAGTGTGGAGAAAAGG 1493
| |||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1431 CTGCTGTTGGCACT---GGTAAGGTCAAAAGGAGGAACTGTTATGAGTGTGGAGAAAAGG 1487
Query 1494 GTCATCTTTCTACTGCTTGTCCCAAAAAGCTTCAAAACACTGCTCACACAAACTCC-CAG 1552
||||||||||||| || ||||||| |||||||||||||||| ||||||||||||| | |
Sbjct 1488 GTCATCTTTCTACAGCCTGTCCCATAAAGCTTCAAAACACTTCTCACACAAACTCAAC-G 1546
Query 1553 CTGGAACACCAGACTGTTGAGGCAGGACCGATTCAGGTAACAAGCTATAGTCTTCAAAAG 1612
||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1547 CTGGATCACCAAACTGTTGAGGCAGGACCGACTCAGGTAACAAGCTATAGTCTTCAAAAG 1606
Query 1613 AAAACAAGAGACTCTGAGAACAATGGTGGTTCTTTCATGGATGAGA-CATATGCTACTGT 1671
|||||||||||| |||| |||||||||||||| ||||||||||||| | |||||||||||
Sbjct 1607 AAAACAAGAGACACTGAAAACAATGGTGGTTCGTTCATGGATGAGAGC-TATGCTACTGT 1665
Query 1672 TCCGATATCTGTTGATGTGACGAATGGAGCTAATGATGCAAGCTTAACATCTGCAGTTAG 1731
||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1666 TCCGATATCCATTGATGTGACAAATGGAGCTAATGATGCAAGCTTAACATCTGCGGTTAG 1725
Query 1732 CACTGGTAAGATCAAAAAGAGAAACTGTTACGAGTGTGGAGAAAAAGGTCATCTTTCTTC 1791
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1726 CACTGGTAAGATCAAAAAGAGAAACTGTTACGAGTGCGGAGAAAAAGGTCATCTTTCTTC 1785
Query 1792 AGCTTGCCCTAAGAAGCCGCAAAAACAAGGCTGATGA 1828
|||||||||||| |||| |||||||||||||||||||
Sbjct 1786 AGCTTGCCCTAACAAGCTGCAAAAACAAGGCTGATGA 1822
Score = 130 bits (70), Expect = 5e-29
Identities = 136/167 (81%), Gaps = 8/167 (5%)
Strand=Plus/Plus
Query 1452 GTAAGGTCAAAAGGAGGAACTGTTACGAGTGTGGAGAAAAGGGTCATCTTTCTACTGCTT 1511
||||||||||||||||| |||||| ||||||||||||||||||||||||||||| || |
Sbjct 1194 GTAAGGTCAAAAGGAGGGTCTGTTATGAGTGTGGAGAAAAGGGTCATCTTTCTACAGCCT 1253
Query 1512 GTCCCAAAAAGCTTCAAAACACTGCTCA-CA--CAAACTCCCAGCTGGAACACCAGACTG 1568
|||||| |||||||||||| ||| | | || ||||||| |||||| || ||||||
Sbjct 1254 GTCCCATAAAGCTTCAAAAGGCTGATGATCAGGCAAACTCAAAGCTGGGTCAAGAGACTG 1313
Query 1569 TTGA-GGCAGGACCGATTCAGGTAACAAGCTATAGTCTTCAAAAGAA 1614
|||| || || |||| | | | || | ||||| |||||| ||||||
Sbjct 1314 TTGATGGTAG-ACCGGCT-ATGCAA-A-GCTATGGTCTTCCAAAGAA 1356
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96033642585
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5