BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485960
Length=1547
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55370.3 | Symbols: OBP3 | OBF-binding protein 3 | chr3:2052... 1061 0.0
> AT3G55370.3 | Symbols: OBP3 | OBF-binding protein 3 | chr3:20527063-20529291
FORWARD LENGTH=1657
Length=1657
Score = 1061 bits (574), Expect = 0.0
Identities = 663/706 (94%), Gaps = 5/706 (1%)
Strand=Plus/Plus
Query 185 GCAAGGGAACCAACATCAGCTAGACTGTGTCCCAACTGACCAGAACCCTAATAATTATTT 244
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||
Sbjct 324 GCAAGGGAACCAACATCAGCTAGAATGTGTCACAACTGACCAGAACCCTAATAATTACTT 383
Query 245 ACGGCAGCTCTCATCACCACCGGCTTCTCAAGCTGACA----CGAGCCAAGCTACAGTGA 300
|||||||||||||||||||||| ||||||| | || || |||| ||||||| |||||
Sbjct 384 ACGGCAGCTCTCATCACCACCGACTTCTCAGGTTG-CAGGTTCGAGTCAAGCTAGAGTGA 442
Query 301 ATTCAATGGTGGAACGTGCTCGGATCGCGAAAGTCCCATTGCCTGAAGCAGCTCTAAATT 360
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 443 ATTCAATGGTGGAACGTGCTCGGATCGCAAAAGTCCCATTGCCTGAAGCAGCTCTAAATT 502
Query 361 GCCCTAGATGTGACTCAACCAATACAAAGTTCTGTTACTTCAATAACTATAGTCTTACTC 420
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 503 GCCCTAGATGTGACTCAACCAATACTAAGTTCTGTTACTTCAATAACTATAGCCTTACTC 562
Query 421 AGCCTCGCCACTTCTGCAAAACATGTCGCCGCTATTGGACACGTGGCGGTGCCCTGAGGA 480
| |||||||| ||||||||||||||||| ||||||||||||||||||||| || ||||||
Sbjct 563 AACCTCGCCATTTCTGCAAAACATGTCGTCGCTATTGGACACGTGGCGGTTCCTTGAGGA 622
Query 481 ATGTTCCTGTTGGAGGAGGCTTTAGGAGGAACAAGAGAAGCAAATCCAGATCGAAATCTA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 ATGTTCCTGTTGGAGGAGGCTTTAGGAGGAACAAGAGAAGCAAATCCAGATCGAAATCTA 682
Query 541 CGGTCGTGGTCTCGACTGATAACAATACTACTACTTCATCACTTACTTCTCGCCCAAGTT 600
|||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||
Sbjct 683 CGGTCGTGGTCTCGACTGATAATACTACTAGTACTTCATCACTTACTTCTCGCCCAAGTT 742
Query 601 ACTCAAACCCTAGCAAGTTTCTTAGCTACGGTCAAGTCCCGGGGTTTTCTTCCAACTTAC 660
||||||||||||||||||||| ||||||||||||| |||||| |||| ||||||||| |
Sbjct 743 ACTCAAACCCTAGCAAGTTTCATAGCTACGGTCAAATCCCGGAGTTTAATTCCAACTTGC 802
Query 661 CCATCTTGCCTCCTCTTCAAAGTCTCGGAGATTACAATTCAAGCAACACTGGATTAGATT 720
|||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||
Sbjct 803 CCATCTTGCCTCCTCTCCAAAGCCTTGGAGATTACAATTCAAGCAACACTGGATTAGATT 862
Query 721 TTGGCGGAATTCAAATAGGCAACGTGATAAGTGGTATGAGTTCCAGTGGTGGGATCTTGG 780
|||| |||| ||||||| ||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 863 TTGGTGGAACTCAAATAAGCAACATGATAAGTGGTATGAGTTCTAGTGGTGGGATCTTGG 922
Query 781 ATCCATGGAGAATACCTTCATCACAACAAGCTCAGCAATTCCCTTTCTTGATCAACACTA 840
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 923 ATGCATGGAGAATACCTCCATCACAACAAGCTCAGCAATTCCCTTTCTTGATCAACACTA 982
Query 841 CGGGATTGGTGCAATCTTCAAATGCGTTATATCCATCACTAGAAGG 886
| |||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 983 CCGGATTGGTGCAATCTTCAAACGCGTTATATCCATTACTAGAAGG 1028
Score = 407 bits (220), Expect = 2e-112
Identities = 244/256 (95%), Gaps = 0/256 (0%)
Strand=Plus/Plus
Query 977 AGGCGGGGATGGCGCCGCGCAAGCGAGAAATGTGAAGGCGGAAGAGAATGATCAGGATCG 1036
|||||||| | ||||| ||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1026 AGGCGGGGTTAGCGCCACGCAAACAAGAAATGTGAAGGCGGAAGAGAATGATCAGGATCG 1085
Query 1037 GGGGAGGGATGGGGACGGAGGGAATAACTTATCAAGAAACTTTTTGGGTAATATCAACAT 1096
||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1086 GGGTAGGGATGGGGATGGAGTGAATAACTTATCAAGAAACTTTTTGGGTAATATCAACAT 1145
Query 1097 AAACTCAGCCAGGAACGATGAATACACATCATGGGGAGGTAATAGTTCTTGGACCGGTTT 1156
|||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1146 AAACTCAGGCAGGAACGAGGAATACACATCATGGGGAGGTAACAGTTCTTGGACCGGTTT 1205
Query 1157 CAGCTCCAACAACTCAACAGGCCATCTCTCATTCTAAGTACTCAGCACTAGCTATTCTTG 1216
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1206 CACCTCCAACAACTCAACAGGCCATCTCTCATTCTAAGTACTCAGCACTAGCTATTCTTG 1265
Query 1217 ATGATTCTTTTGTTGG 1232
||||||||||||||||
Sbjct 1266 ATGATTCTTTTGTTGG 1281
Score = 379 bits (205), Expect = 4e-104
Identities = 267/294 (91%), Gaps = 16/294 (5%)
Strand=Plus/Plus
Query 1233 AGATCAAACCATGCAGCTATATCCAAAGGCTAATTTTGGGGCTCAAAGGAAAGGTATGGT 1292
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1326 AGATCAAACCATGCAGCTATATCCAAAGGCTAATTTTGAGGCTCAAAGGAAAGGTATGGT 1385
Query 1293 TGTAAAACTATCtttttttATCTCTTAGAAGATCTTCAAATTAAGTGTGAGTATGTTAAT 1352
| |||||||||| ||||| |||| ||| ||||||||| | ||||||||||||||| ||
Sbjct 1386 TATAAAACTATC-TTTTTGATCTTTTAAAAGATCTTC--A--AAGTGTGAGTATGTTTAT 1440
Query 1353 TGGTTGGCTTCTGGTGATATTTATGTTTTATCAGAA-TTGG---TGT-TATTGGCTATAT 1407
||||||||||||||||||||||||||||||| |||| |||| | | ||||||| |||
Sbjct 1441 TGGTTGGCTTCTGGTGATATTTATGTTTTATTAGAATTTGGTCTTATATATTGGC--TAT 1498
Query 1408 ATATAGTGGTGTGGGTG--ATGTATGAATTCAAGAGTTGATGATGGAAACTTTTTTGTGT 1465
|||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1499 ATATAGAGGTGTGGGTGATATGTATGAATTCAAGAGTTGATGTTGGAAACTTTTTTGTGT 1558
Query 1466 GTTCATTGAATAATCATCGAATTCTCAATTTCTTGGA--CCCACTATGAGACAT 1517
||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 1559 GTTCATTGAATAATCATCGAATTCTCAATTTCTTGGAGACCCATTATGAGACAT 1612
Score = 230 bits (124), Expect = 4e-59
Identities = 171/192 (89%), Gaps = 10/192 (5%)
Strand=Plus/Plus
Query 1 TTATCCCATTCAGCTTCT-CC--CT-tctctctctctctctctctctctctAGATCAATT 56
||||||||||||||| || || || ||||||||||||||||||||||||||||||||||
Sbjct 1 TTATCCCATTCAGCTCCTCCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGATCAATT 60
Query 57 CTTTCTTGTATGATGTGATT-TCCCACCATTTAGGCGACCTCTTACCTAAAAAAGGATTT 115
||||||| |||||||||||| ||| ||||| | ||||||||||||||||||| ||||
Sbjct 61 CTTTCTTCTATGATGTGATTATCC-ACCATATCTGCGACCTCTTACCTAAAAA-GGATAC 118
Query 116 AAAGTTA-A-ATTCAAAGATGGTTTTCTCATCTCTTCCAGTGAATCAGTTTGATTCACAA 173
|| || | | |||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 119 AA-GTAAGAGATTCAAAGATGGTTTTCTCATCTCTTCCAGTGAATCAGTTCGATTCCCAA 177
Query 174 AACTGGCAGCAG 185
|| |||||||||
Sbjct 178 AATTGGCAGCAG 189
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76355028945
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5