BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg485965

Length=596
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G55390.1 | Symbols:  | Uncharacterised protein family (UPF04...  1013    0.0  


> AT3G55390.1 | Symbols:  | Uncharacterised protein family (UPF0497) 
| chr3:20534615-20535685 FORWARD LENGTH=820
Length=820

 Score = 1013 bits (548),  Expect = 0.0
 Identities = 580/596 (97%), Gaps = 0/596 (0%)
 Strand=Plus/Plus

Query  1    TCTCCGCCATGCGCTCGCCGCATGCTTTCCGTAACGGCGAATCTCCGAGTTCGCGAGACC  60
            |||||||||||||||||||||||||||||||||||||||||||||||| ||  || ||||
Sbjct  163  TCTCCGCCATGCGCTCGCCGCATGCTTTCCGTAACGGCGAATCTCCGACTTTACGGGACC  222

Query  61   ATACTCACTTCCACTCAACCGTCGTAGCTCAGAAACTCCGTCGATTCAActctttaatcc  120
            |||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||
Sbjct  223  ATACTCACTTCCACTCAACCGTCACAGCTCAGAAACTCCGTCGATTCAACTCCTTAATCC  282

Query  121  tcctcctccgtctcgcttctttctctttctctctcgcttccgccgtctttATGCTCACCA  180
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  283  TCCTCCTCCGTCTCGCTTCTTTCTCCTTCTCTCTCGCTTCCGCCGTCTTTATGCTCACCA  342

Query  181  ATTCCCGCGGCTCCGGTTCTCCTCACTGGTACGATTTCGACGCTTTCAGATTCGTGTTTG  240
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  343  ATTCCCGCGGCTCCGCTTCTCCTCACTGGTACGATTTCGACGCTTTCAGATTCGTGTTTG  402

Query  241  TGGCAAACGCGATCGTGGCGTTATATTCGGTGTTTGAAATGGGAACTTGCGTTTGGGAAT  300
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  403  TGGCAAACGCGATCGTGGCGTTATACTCGGTGTTTGAAATGGGAACTTGCGTTTGGGAAT  462

Query  301  TTTCAAGAGAAACCACCTTATGGCCTGAAGCTTTTCAGGTCTGGTTCGATTTTGGTCATG  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  463  TTTCAAGAGAAACCACCTTATGGCCTGAAGCTTTTCAGGTCTGGTTCGATTTTGGCCATG  522

Query  361  ACCAGGTGTTCTCGTACCTATTGCTATCGGCAGGATCGGCTGCAGCAGCATTGGCTAGAA  420
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  523  ACCAGGTGTTCTCGTACCTATTGCTATCGGCGGGATCGGCTGCAGCAGCATTGGCTAGAA  582

Query  421  CGATGAGAGGAGGTGACACGTGTACGGCTAACAAAGCCTTTTGCTTGCAGTCAGATGTAG  480
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  583  CGATGAGAGGTGGTGACACGTGTACGGCTAACAAAGCCTTTTGCTTGCAGTCAGATGTAG  642

Query  481  CCATTGgcttaggctttgctgcttttctcttcttagctttctcttcttgcttctctggtt  540
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  643  CCATTGGCTTAGGCTTTGCTGCTTTTCTATTCTTAGCTTTCTCTTCTTGCTTCTCTGGTT  702

Query  541  ttcGTGTCGCTTGTTTCCTTATTACCGGCTCTCGTTTTCACCTTTACTCATGATGA  596
            ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  703  TTCGTGTAGCTTGTTTCCTTATTACTGGCTCTCGTTTTCACCTTTACTCATGATGA  758



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28683697937


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5