BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485969
Length=1024
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55420.1 | Symbols: | unknown protein; Has 21 Blast hits to... 1563 0.0
> AT3G55420.1 | Symbols: | unknown protein; Has 21 Blast hits
to 21 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr3:20547717-20548767 FORWARD
LENGTH=1051
Length=1051
Score = 1563 bits (846), Expect = 0.0
Identities = 962/1015 (95%), Gaps = 19/1015 (2%)
Strand=Plus/Plus
Query 1 CAGAAACCTGTCTCATGACGTTGTAATAATAAT-AT-T-GCaaaatcaagaaacaacata 57
||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||
Sbjct 1 CAGAAACCTGTCTCATGACGTTGTAATAATAATAATATAGCAAAATCAAGAAACAACATA 60
Query 58 attcactaaaaataaagtaagtaaaagaaagaaagaaagaaagagaTAGTGGCTCAAGTC 117
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 61 ATTCACTAAAAATAAAGTAAGT---A-AAAGAAAGAAAGAAAGAGATAGTGGCTCAAGTC 116
Query 118 TCAAACTCAATCAAAAGCACCAAACCAAAGTTACCAAACTTCTCACCA-C-aaagagaga 175
||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||
Sbjct 117 TCAAACTCAATCAAAAGCACCAAACCAAAGTTACCAAACTTCTCATCACCAAAAGAGAGA 176
Query 176 agaagaagaaagaaacagagaaccgccatggcagagaaagagaagaaaaccaaaaagaag 235
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 177 AGAAGAAGAAAGAAACAGAGAATCGCCATGGCAGAGAAAGAGAAGAAAACAAAAAAGAAG 236
Query 236 aagaagaaagagaagCATCAATCTTCCGACATCTCTTTCAAACCAACCTCCGACGTAAAA 295
||||||||||||||||||||||||||||||||||||||||| || | || |||||||||
Sbjct 237 AAGAAGAAAGAGAAGCATCAATCTTCCGACATCTCTTTCAAGCCTTCTTCAGACGTAAAA 296
Query 296 GGTCTGAAATTCGGTGGCCAAATAATCGTCAAATCATTCACAATCCGACGAGCAAGAACA 355
|| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GGACTCAAATTCGGCGGCCAAATAATCGTCAAATCATTCACAATCCGACGAGCAAGAACA 356
Query 356 CTCGAGCTTCTAAAACTCCTCTCACTCCCTTCTTCATCATCACCGCCGCTTCTTTCCACG 415
|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 357 TTCGAGCTTCTTAAACTCCTCTCTCTCCCTTCTTCATCATCACCGCCGCTTCTTTCCACG 416
Query 416 GCGGCGTATCTTCCTACAAACTTCACAATCCTTGCACACCACGCATGGCATACACTAACA 475
||||| || ||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 417 GCGGCTTACCTTCCGACAAACTTCACAATCCTTGCACACCACGCATGGCACACACTAACA 476
Query 476 CTCGGTCTCGGAACAAGAAAATCAAAAGTTGTAGTGTTCGTGTTCGAAACAGAGGCGATG 535
|| ||||||||||||||||| || |||||||| || ||||||||||||||||||||||||
Sbjct 477 CTAGGTCTCGGAACAAGAAAGTCCAAAGTTGTGGTCTTCGTGTTCGAAACAGAGGCGATG 536
Query 536 AAATCATCGGTTGTTGCGGCAGAAGGAGGAATCTGGCCGCCGGAGATTCCATTGGGAGAT 595
|||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 537 AAATCATCCGTTGTGGCGGCGGAAGGAGGAATCTGGCCATCGGAGATTCCATTGGGAGAT 596
Query 596 GTGAACAAGAAGATGATCAGAAAGTTAAAGAACTGGGAGATGGCTAGGTTTAAGTTCAGA 655
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 597 GTGAACAAGAAGATGATCAGAAAGTTAAAGAACTGGGAGATGGCAAGGTTTAAGTTCAGA 656
Query 656 AAAGGTTGTATCACGTTTTACGTTTACGCCGTGAGAAACGCCGGAAATGAAGGGTTTGCG 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 AAAGGTTGTATCACGTTTTACGTTTACGCCGTGAGAAACGCCGGAAATGAAGGGTTTGCG 716
Query 716 GCGGCGGAGGACTTAAAGGTAATATTACAAGCGGTGGTGGCATTGAAAGATTTCATGGAT 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 GCGGCGGAGGACTTAAAGGTAATATTACAAGCGGTGGTGGCATTGAAAGATTTCATGGAT 776
Query 776 CACACCGCAATGCTTGTAATGCCCCACCAGAAAAGTATTAATTACAACTCTTGTCCTCCT 835
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 777 CACACCGCAATGCTTGTAATGCCCCACCAGAAAAGTATTAATTACAGCTCTTGTCCTCCT 836
Query 836 TTTGCCATGGCTCACT-AACTTTGAACAATATTC-ACAAGTGGGCC-tcttct-tctttt 891
|||||||||||||||| |||||||||||||||| ||||||||||| |||||| | ||||
Sbjct 837 TTTGCCATGGCTCACTGAACTTTGAACAATATTATACAAGTGGGCCCTCTTCTCTTTTTT 896
Query 892 cttttcttttttcactcctttttttttttGATATATAGAAGaaaaaaaGTTCGGATTATT 951
||||||||||| ||||||||||||| |||||||| ||| |||||| ||||||||||||
Sbjct 897 CTTTTCTTTTT--ACTCCTTTTTTTTGTTGATATA--GAA-AAAAAA-GTTCGGATTATT 950
Query 952 ATTTATTTTTGGTTCCATAATGGAGTTGTTTGTTATTAATTTCCTGTAttttttt 1006
||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 951 ATTTATTTTTGGTTCCATAATGGGGTTGTTTGTTATTAATTTCCTGTATTTTTTT 1005
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50183912853
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5