BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485972
Length=1584
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55450.2 | Symbols: PBL1 | PBS1-like 1 | chr3:20558102-20560... 1877 0.0
AT2G39660.1 | Symbols: BIK1 | botrytis-induced kinase1 | chr2:1... 736 0.0
AT2G05940.1 | Symbols: | Protein kinase superfamily protein | ... 97.1 4e-19
> AT3G55450.2 | Symbols: PBL1 | PBS1-like 1 | chr3:20558102-20560096
FORWARD LENGTH=1441
Length=1441
Score = 1877 bits (1016), Expect = 0.0
Identities = 1199/1283 (93%), Gaps = 30/1283 (2%)
Strand=Plus/Plus
Query 216 ATAAGAGTAGTAGTGGTCTCGATGATCTTCATCTCTCGAGCTGTAAATCTTCATCATCAG 275
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 170 ATAAGAGCAGTAGTGGTCTCGATGATCTTCATCTCTCGAGCTGTAAATCTTCATCATCAG 229
Query 276 CTGTAGCTCACAAGACAGAAGGAGAGATTCTTAGCTCAACGAGCGTTAAAAACTTTAGCT 335
|| |||||| |||||||||||||| || ||||||||||||| ||| |||| ||||||||
Sbjct 230 CTACAGCTCATAAGACAGAAGGAGAAATCCTTAGCTCAACGACCGTCAAAAGCTTTAGCT 289
Query 336 TTAATGAACTTAAACTAGCAACCAGAAACTTCAGATCGGACTCTGTTGTTGGAGAAGGTG 395
|||||||||||||||| || || |||||||||||||||||||||||||||||||||||||
Sbjct 290 TTAATGAACTTAAACTCGCTACTAGAAACTTCAGATCGGACTCTGTTGTTGGAGAAGGTG 349
Query 396 GCTTTGGTTGTGTCTTTAGAGGTTGGCTTGATGAGACTACTCTTACTCCTACCAAATCTA 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 GCTTTGGTTGTGTCTTTAGAGGTTGGCTTGATGAGACTACTCTTACTCCTACCAAATCTA 409
Query 456 GCTCTGGTCTTGTAATTGCTGTTAAACGACTTAACCCTGATGGTTTTCAAGGTCACCGTG 515
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 410 GCTCTGGTCTTGTTATTGCTGTTAAACGACTTAACCCTGATGGTTTTCAAGGTCACCGAG 469
Query 516 AATGGCTGACGGAGATCAACTACTTGGGGCAGTTAAGTCACCCGAATTTGGTTAAATTGA 575
|||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 470 AATGGCTGACAGAGATTAACTATTTGGGGCAGTTAAGTCACCCGAATTTGGTTAAATTGA 529
Query 576 TTGGTTATTGCTTGGAAGATGAACAACGGCTTCTGGTGTATGAGTTTATGCACAAGGGTA 635
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 530 TTGGTTATTGCTTGGAAGATGAACAACGGCTTCTTGTGTATGAGTTTATGCACAAGGGTA 589
Query 636 GTCTTGAGAATCATCTGTTTGCAAATGGAAATCGGGATTTTAAGCCGCTCTCTTGGATTC 695
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 590 GTCTTGAGAATCATCTGTTTGCAAATGGAAATAAGGATTTTAAGCCGCTATCTTGGATTC 649
Query 696 TACGGATTAAGGTTGCACTTGATGCAGCTAAAGGTCTTGCATTTCTTCATAGCGATCCCG 755
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 650 TACGGATTAAGGTTGCACTTGATGCAGCTAAAGGTCTTGCATTTCTTCATAGTGATCCCG 709
Query 756 TCAAAGTCATATACCGAGACATTAAGGCGTCAAACATCTTGCTGGACTCGGACTTCAACG 815
|||||||||| ||| ||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 710 TCAAAGTCATTTACAGAGACATCAAGGCGTCAAACATCTTACTGGACTCGGACTTCAACG 769
Query 816 CTAAGCTTTCAGACTTTGGGTTAGCGAGGGACGGTCCAATGGGAGAGACAA-GCTATGTT 874
| ||||||||||||||||| |||||||| ||||||||||||||||| |||| | ||||||
Sbjct 770 CAAAGCTTTCAGACTTTGGTTTAGCGAGAGACGGTCCAATGGGAGA-ACAAAGTTATGTT 828
Query 875 AGCACAAGGGTCATGGGTACATTTGGCTACGCTGCTCCTGAGTACGTCTCAACAGGTCAC 934
|| ||||||||||||||||| ||||| ||||| ||||||||||| ||||||||||| |||
Sbjct 829 AGTACAAGGGTCATGGGTACTTTTGGGTACGCAGCTCCTGAGTATGTCTCAACAGGCCAC 888
Query 935 TTGAATGCTAGAAGCGACGTGTACAGTTTCGGGGTGGTTCTGCTAGAATTACTATGTGGA 994
|| ||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||
Sbjct 889 TTAAATGCTAGAAGCGACGTATACAGTTTCGGGGTTGTTCTGCTAGAACTACTATGTGGA 948
Query 995 AGGCAAGCACTGGACCATAACCGCCCGGCCAAGGAGCAAAACCTTGTGGATTGGGCTCGA 1054
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 AGGCAAGCACTAGACCATAACCGCCCGGCCAAGGAGCAAAACCTTGTGGATTGGGCTCGA 1008
Query 1055 CCATACCTCACAAGCAGGCGAAAGGTTCTACTAATTGTGGACACTCGGCTTAACTCTCAG 1114
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1009 CCATACCTCACAAGCAGGCGAAAGGTTCTACTAATTGTGGACACTCGGCTTAACTCACAG 1068
Query 1115 TACAAACCCGAAGGGGCTGTGAGACTGGCAAGCATTGCTGTGCAGTGCCTCTCATTCGAA 1174
|||||||||||||| || |||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1069 TACAAACCCGAAGGAGCAGTGAGACTGGCAAGCATTGCTGTGCAATGCCTATCATTCGAA 1128
Query 1175 CCCAAATCACGCCCGACCATGGACCAAGTGGTTCGAGCCTTGATACAGCTGCAAGACAGC 1234
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1129 CCCAAATCACGTCCGACCATGGACCAAGTGGTTCGAGCCTTGGTACAGCTGCAAGACAGC 1188
Query 1235 GTGGTTAAACCGGGTCTACATAAACCGGCAAATGTTGACCCATTTAAGGTTAAGGATACC 1294
||||||||||||| | || | ||||||||| |||||||||||||||||
Sbjct 1189 GTGGTTAAACCGG--C--CA-A----------TGTTGACCCGCTTAAGGTTAAGGATACC 1233
Query 1295 AAGAAACTTGTGGGATTGAAAACCGAAGACAAGTACCAGAGAAACGGTTTAAACAAAAAA 1354
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1234 AAGAAACTTGTGGGATTGAAAACAGAAGACAAGTACCAGAGAAACGGTTTAAACAAAAAA 1293
Query 1355 CCCGTTGGATTGCAGTAGGTAG-GG-AAATATAAGGTTACT-GGTTAGGTACTCTTCATG 1411
||||||||||| ||||||||| || ||||||||||||||| ||||||||||||||||||
Sbjct 1294 ACCGTTGGATTGTAGTAGGTAGAGGGAAATATAAGGTTACTTGGTTAGGTACTCTTCATG 1353
Query 1412 TCTTCTTCTTGTGTATTGTAATATTGTGTGAAGTGATTTT--C-T-----A-CACTGCTT 1462
|||||||||||||||||||||||||||| ||||||||||| | | | ||||||||
Sbjct 1354 TCTTCTTCTTGTGTATTGTAATATTGTGCGAAGTGATTTTGACATTTTGTAACACTGCTT 1413
Query 1463 ATAGTTTTGCTCCTGAAAT-TTC 1484
||||||||||||||||||| |||
Sbjct 1414 ATAGTTTTGCTCCTGAAATATTC 1436
Score = 102 bits (55), Expect = 1e-20
Identities = 57/58 (98%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 158 AAACGATCTTCTTCATCATTCTACTAAATGGGTTCTTGTCTCAGTTCTCGTGTTCTTA 215
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 AAACGATCTTCTTCATCATTCTACTAAATGGGTTCTTGTCTCAGTTCTCGTGTCCTTA 58
> AT2G39660.1 | Symbols: BIK1 | botrytis-induced kinase1 | chr2:16531688-16533931
FORWARD LENGTH=1773
Length=1773
Score = 736 bits (398), Expect = 0.0
Identities = 798/988 (81%), Gaps = 39/988 (4%)
Strand=Plus/Plus
Query 281 GCTCACAAGACAGAAGGAGAGATTCTT-AGCTCAACGAGC-GTTAAAAACTTTAGCTTTA 338
||||| ||||| ||||| |||| | || || || || | || |||| ||| | |||||
Sbjct 370 GCTCAGAAGACGGAAGGGGAGA-TATTGAGTTCGAC-CCCTGTCAAAAGCTTCACCTTTA 427
Query 339 ATGAACTTAAACTAGCAACCAGAAACTTCAGATCGGACTCTGT-TG-TTGGAGAAGGTGG 396
| ||||| ||||| || || |||||||||||| | || | || || | |||||||||||
Sbjct 428 ACGAACTCAAACTCGCCACAAGAAACTTCAGACCAGA-T-AGTGTGATCGGAGAAGGTGG 485
Query 397 CTTTGGTTGTGTCTTTAGAGGTTGGCTT-GATGAGACTACTCTTACTCCTACCAAATCTA 455
||||||||||||||||| ||| ||| || |||||| | ||||| ||||| || ||| ||
Sbjct 486 CTTTGGTTGTGTCTTTAAAGGCTGG-TTAGATGAGTCCACTCTCACTCCGACTAAACCTG 544
Query 456 GCTCTGGTCTTG-TAATTGCTGTTAAAC-GACTTAACCCTGATGGTTTTCAAGGTCACCG 513
| | ||| ||| | || || |||||| | ||||||| || |||||||||||||||||
Sbjct 545 GAACCGGT-TTGGTCATCGCCGTTAAAAAG-CTTAACCAAGAAGGTTTTCAAGGTCACCG 602
Query 514 TGAATGGCTGACGGAGATCAACTACTTGGGGCAGTTAAGTCACCCGAATTTGGTTAAATT 573
|||||||||||| |||||||| ||||||||||| | |||||||| ||| | |||||| |
Sbjct 603 TGAATGGCTGACAGAGATCAATTACTTGGGGCAACTGAGTCACCCAAATCTAGTTAAACT 662
Query 574 GATTGGTTATTGCTTGGAAGATGAACAACGGCTTCTGGTGTATGAGTTTATGCACAAGGG 633
||| ||||||||||| ||||||||||| || ||||| || || ||||||||||| || ||
Sbjct 663 GATCGGTTATTGCTTAGAAGATGAACACCGTCTTCTAGTCTACGAGTTTATGCAAAAAGG 722
Query 634 TAGTCTTGAGAATCATCTGTTTGCA-AATGGAAAT-CGGGATTTTAAGCCGCTCTCTTGG 691
||||||||||||||||| || || || | | | | |||||||||| ||| | |||
Sbjct 723 AAGTCTTGAGAATCATCTATT--CAGAA-G-AGGTGCAT-ATTTTAAGCCACTCCCATGG 777
Query 692 ATTCTACGGATTAAGGTTGCACTTGATGCAGCTAAAGGT-CTTGCATTTCTTCATAGCGA 750
|||||||| | || ||||| ||||||||||| ||||| ||||| |||||||| |||||
Sbjct 778 TTTCTACGGGTCAATGTTGCGCTTGATGCAGC-AAAGGGGCTTGCTTTTCTTCACAGCGA 836
Query 751 TCCCGTCAAAGTCATATACCGAGACATTAAGGCGTCAAACATCTTGCTGGACT-CGGACT 809
|||||||||||| ||||||||||||||||| || || |||||||| || || | ||||||
Sbjct 837 TCCCGTCAAAGTGATATACCGAGACATTAAAGCCTCGAACATCTTACTTGA-TGCGGACT 895
Query 810 TCAACGCTAAGCTTTCAGACTTTGGGTTAGCGAGGGACGGTCCAATGGGAGAGACAAGCT 869
|||||| || ||||| |||||||| |||| || |||||||||||||| || || |
Sbjct 896 ACAACGCAAAACTTTCTGACTTTGGACTAGCTAGAGACGGTCCAATGGGTGATTTGAGTT 955
Query 870 ATGTTAGCACAAGGGTCATGGGTACATT-TGGCTACGCTGCTCCTGAGTACGTCTCAACA 928
||||||| ||||||||||||||||| || ||| ||||| || ||||||||| | ||| ||
Sbjct 956 ATGTTAGTACAAGGGTCATGGGTAC-TTATGGGTACGCCGCGCCTGAGTACATGTCATCA 1014
Query 929 GGTCACTTGAATGCTAGAAGCGACGTGTACAGTTTCGGGGTGGTT-CTGCTAGA-ATTAC 986
|||||||||||||| |||||||| |||||||||||||| || || || ||||| |||
Sbjct 1015 GGTCACTTGAATGCAAGAAGCGATGTGTACAGTTTCGGAGTT-TTGCTTCTAGAGATTT- 1072
Query 987 TATGTGG-AAGGCAAGCACTGGACCATAACCGCCCGGCCAAGGA-GCAAAACCTTGTGGA 1044
||| ||| ||| | ||| |||| |||||| | ||||| || || | |||||||||||||
Sbjct 1073 TATCTGGTAAG-CGAGCGTTGGATCATAACAGACCGGCTAAAGAAG-AAAACCTTGTGGA 1130
Query 1045 TTGGGCTCGACCATACCTCACAAGCAGGCGAAAGGTTCTACTAATTGTGGACACTCGGCT 1104
|||||||||||| ||||||||||||| || |||||||| ||||| ||||||| ||||||
Sbjct 1131 TTGGGCTCGACCGTACCTCACAAGCAAACGTAAGGTTCTCCTAATCGTGGACAATCGGCT 1190
Query 1105 TA-ACTCTCAGTACAAACCCGAAGGGGCTGTGAGACTGGCAAGCATTGCTGTGCAGTGCC 1163
| || | |||||| ||| |||| || |||||| |||||||| | || |||||||| |
Sbjct 1191 -AGACACACAGTACCTACCTGAAGAAGCCGTGAGAATGGCAAGCGTGGCGGTGCAGTGTC 1249
Query 1164 TCTCATTCGAACCCAAATCACGCCCGACCATGGACCAAGTGGTTCGAGCCTTGATA-CAG 1222
||||||| |||||||| || ||||||||||||||||||||||| || ||||| | | ||
Sbjct 1250 TCTCATTTGAACCCAAGTCGCGCCCGACCATGGACCAAGTGGTCCGTGCCTT-ACAACAA 1308
Query 1223 CTGCAAGACAGCGTGGTTAAACCGGGTC 1250
|| || |||| | ||| |||||| |||
Sbjct 1309 CTTCAGGACAACTTGGGAAAACCGAGTC 1336
> AT2G05940.1 | Symbols: | Protein kinase superfamily protein
| chr2:2287238-2289307 REVERSE LENGTH=1702
Length=1702
Score = 97.1 bits (52), Expect = 4e-19
Identities = 149/193 (77%), Gaps = 17/193 (9%)
Strand=Plus/Plus
Query 471 TTGCTGTTAAA-CGACTTAACCCTGATGGTTTTCAAGGTCACCGTGAATGGCTGACGGA- 528
||||||||||| | ||| | | ||| ||| ||||||||||||||||||||||||||||
Sbjct 393 TTGCTGTTAAATTG-CTTGATCTTGAAGGTCTTCAAGGTCACCGTGAATGGCTGACGGAA 451
Query 529 GATCAACTACTTGGGGCAGTT-AAGTCACCCGAATTTGGTTAAATTGATTGGTTATTGCT 587
| | | | ||||| || || ||| ||| |||||||| ||||||||||||||||| |
Sbjct 452 GTT-ATGTTTTTGGGACAATTGAAG-CACAAAAATTTGGTGAAATTGATTGGTTATTG-T 508
Query 588 TG-GAAGATGAACA-ACGG-CTTCTGGTGTATGAGTTTATGCACAAG-GGTAGTCTT-GA 642
|| || || ||||| | | || || || |||||||| |||| | | || || ||| ||
Sbjct 509 TGTGAGGAAGAACATA-GAACT-CTTGTTTATGAGTTCATGC-CTCGTGGAAG-CTTAGA 564
Query 643 GAATCATCTGTTT 655
|||||| || |||
Sbjct 565 GAATCAACT-TTT 576
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78212449110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5