BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485973
Length=1076
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55460.1 | Symbols: SCL30, At-SCL30 | SC35-like splicing fac... 1469 0.0
> AT3G55460.1 | Symbols: SCL30, At-SCL30 | SC35-like splicing factor
30 | chr3:20560808-20563762 FORWARD LENGTH=1147
Length=1147
Score = 1469 bits (795), Expect = 0.0
Identities = 1021/1120 (91%), Gaps = 55/1120 (5%)
Strand=Plus/Plus
Query 1 AAGAGCTTAGGGTTCACTTTAGATCTGTCTTTGAACAATGCTACTCTCAAGTGA-CCAAG 59
||| ||||||||||||||| ||||||||||||||||| |||||||||||||||| | ||
Sbjct 22 AAGGGCTTAGGGTTCACTTCAGATCTGTCTTTGAACATTGCTACTCTCAAGTGATCAAAT 81
Query 60 CAACTCCGTCGCAGGTGATGAGGAGATACAGTCCGCCTTATTACAGTCCTCCAAGGAGAG 119
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 82 TAACTCCGTCGCAGGTGATGAGGAGATACAGTCCGCCTTATTACAGTCCTCCGAGGAGAG 141
Query 120 GATACGGTGGTCGAGGTAGAAG---TCCTCCTCCTCCTCCACGACGTGGATAtggtgggg 176
|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
Sbjct 142 GATACGGTGGTCGAGGTAGAAGTCCTCCTCCTCCTCCTCCTCGACGTGGATATGGTGGTG 201
Query 177 gtggtggtggtggtggACGTAGAGGATCTAGCCATGGAAGTCTCTTGGTTCGTAACATTC 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 202 GTGGTGGTGGTGGTGGACGTAGAGGATCTAGCCATGGAAGTCTCTTGGTTCGTAACATTC 261
Query 237 CTCTTGATTGCAGACCTGAAGAGCTTCGTGTGCCCTTTGAGAGGTTTGGACCTGTGAGAG 296
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 262 CTCTTGATTGCAGACCAGAAGAGCTTCGTGAGCCCTTTGAGAGGTTTGGACCTGTGAGAG 321
Query 297 ATGTCTATATCCCCAGAGACTATTACTCAGGGGAACCGCGGGGGTTTGCTTTTGTGGAGT 356
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 322 ATGTCTATATCCCCAGAGACTATTACTCAGGGCAACCGCGGGGGTTTGCGTTTGTGGAGT 381
Query 357 TTGTTGATGCATATGATGCTGGGGAGGCTCAAAGAAGCATGAACAGGAGAATATTTGCCG 416
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 382 TTGTTGATGCATATGATGCTGGGGAGGCTCAAAGAAGCATGAACAGGAGAAGCTTTGCTG 441
Query 417 GAAGAGAGATAACTGTGGTTGTTGCTTCAGAGTCTAGGAAAAGGCCCGAAGAGATGCGTG 476
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 442 GAAGAGAGATAACGGTGGTTGTTGCTTCAGAGTCTAGGAAAAGGCCTGAAGAGATGCGTG 501
Query 477 TGAAGACTAGGACTCGTAGCAGGGAACCTTCAGGCTCCAGAGG-TCGTTCTCATGGACGG 535
||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct 502 TGAAGACTAGGACTCGTAGTAGGGAACCTTCAGGCTCCAG-GGATCGTTCTCATGGACGG 560
Query 536 TCTCGTTCACGTTCAATCTCTCGATCACGCTCTCCTCGTCGTCCATCAGATTCTAGAAGC 595
||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||
Sbjct 561 TCTCGTTCACGTTCAATCTCTCGATCACGTTCTCCACGTCGTCCGTCAGATTCTAGAAGC 620
Query 596 AGATACCGATCAAGGTCTTACTCTCCTGCACCAAGACGAAGAGGAGGTCCTCCTCGTGGA 655
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 AGATACCGATCAAGGTCTTACTCTCCTGCACCAAGACGAAGAGGAGGTCCTCCTCGTGGG 680
Query 656 GAAGAAGATGGAAAAT-ACAGTCGCAGGTCCTATTCCCCTGGTTATGAAGGTGCTACTGC 714
|||||||||| ||||| ||||||| |||||||| |||||||| |||||||||||| ||||
Sbjct 681 GAAGAAGATG-AAAATTACAGTCGTAGGTCCTACTCCCCTGGCTATGAAGGTGCTGCTGC 739
Query 715 TGCT-C-C-AGATCGGGACAGAAATGGAGACAATGAGATCAGAGAAAAACCGGGCTATGA 771
|||| | | |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 740 TGCTGCTCCAGATCGGGACAGAAATGGAGACAATGAGATTAGAGAAAAACCGGGCTATGA 799
Query 772 AGCAGAGGATAGACTTCGTGGTGGAAGAGCAGTTTCAAGGTCGCCATCGGGATCCAGGTC 831
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 800 AGCAGAGGATAGACGTCGTGGTGGAAGAGCAGTTTCAAGGTCGCCATCAGGATCCAGGTC 859
Query 832 CAGGTCTGTGGAGGTATCTCCAAGATGAAACATGTGTCAAGAAG---CCGACCAAAACAT 888
||||||||||||||||||||||||||||||| | ||| |||||| ||||||||||| |
Sbjct 860 CAGGTCTGTGGAGGTATCTCCAAGATGAAACTTATGTGAAGAAGTGGCCGACCAAAACTT 919
Query 889 TATGCAACGCTTTATGGGTATTGCCTCTGTTGTTTCTCTAGTAGTG-GTCTCTGTGTCTT 947
| ||||||||||||||||| |||| | | | ||||||||||| |||||||||||||
Sbjct 920 TGTGCAACGCTTTATGGGTTTTGCAT-T-T-----CTCTAGTAGTGCGTCTCTGTGTCTT 972
Query 948 TAAAAACTCCGT-C---G--T-GT----GAT-----GT---G--ATGT--T---ACTTGA 981
|||||||||| | | | | || ||| || | |||| | ||||||
Sbjct 973 TAAAAACTCCTTACTCTGGCTTGTCAAAGATATTTTGTCTTGTGATGTGATGTTACTTGA 1032
Query 982 AATCG-TACTCGGTTTATGGGTCTTATTTTGAAGTTGTATGAAGA---TTGGTTATGCTT 1037
||||| | ||||||||||||||||||| | || ||||||||||| ||||||||||||
Sbjct 1033 AATCGGTT-TCGGTTTATGGGTCTTATTATAAAATTGTATGAAGAAGATTGGTTATGCTT 1091
Query 1038 TTGATGTGAGAAACGTTTAAAACCCACAATG-GTCGAGTA 1076
||||||||||| | ||||||||||||||||| | ||||||
Sbjct 1092 TTGATGTGAGACAGGTTTAAAACCCACAATGAG-CGAGTA 1130
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52710572250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5