BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485976
Length=796
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19080.1 | Symbols: TTN10, PSF3 | GINS complex protein | chr... 1195 0.0
AT3G55490.1 | Symbols: | GINS complex protein | chr3:20572024-... 1044 0.0
> AT1G19080.1 | Symbols: TTN10, PSF3 | GINS complex protein | chr1:6584241-6586517
FORWARD LENGTH=931
Length=931
Score = 1195 bits (647), Expect = 0.0
Identities = 725/762 (95%), Gaps = 7/762 (1%)
Strand=Plus/Plus
Query 1 GACCGCGAATTTAATCTCAAGGGTAAGGTGGTGTGGAGCCAGCCTTAGGGGATGGCCAAG 60
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct 114 GACCGCGAATTTAATCTCAAGGTTAAGGTGGTGTGGAATCAGCCTTAGGGGATGGCGAAG 173
Query 61 TATTTTGACATTGATGACATACTTATAGAGGAAGAGTTTGTACCGGTTTTGTTCCATAAA 120
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 174 TACTTTGACATTGATGACATACTTATAGAGGAAGAGTTTGTACCGGTTTTATTCCATAAA 233
Query 121 ACAGCAAACGGAGTGACTATTGATCCAAGTGCAGAAACAAATTGTGCTGAACAAGGCTCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 ACAGCAAACGGAGTGACTATTGATCCAAGTGCAGAAACAAATTGTGCTGAACAAGGCTCT 293
Query 181 AAAGTTGAACTTCCCTTCTGGCTTGCTCATGAGTTGCA-CTTGAGACAAGCTGTTACCAT 239
|||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||
Sbjct 294 AAAGTTGAACTTCCCTTCTGGCTTGCTCATGAGTTGCATCT-GAGGCAAGCTGTTACCAT 352
Query 240 AAACCTTCCTCCCTGCTTCGACCAAAAGACGAGGCTTGAAGTTCAGGCTGATGCAGCATA 299
||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||
Sbjct 353 AAACCTTCCTCCCTGTTTTGACCAAAAGACGAGGCTTGAAGTTCAGGCTGATGCTGCATA 412
Query 300 CGTCGATCTTAGATCTCGCTGTCCTTATTTTTATGAATTCGGATGCAAGTTAGAGCCACT 359
||||||||||||||| || ||||| || ||||||||||| ||||||||| ||||||||||
Sbjct 413 CGTCGATCTTAGATCGCGATGTCCATACTTTTATGAATTTGGATGCAAGATAGAGCCACT 472
Query 360 GGTTACAGATAGAACACTTGGGATCTTGCTATCGACTGCGTTTAAGATCAGATACAAAGA 419
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 473 GGTCACAGATAGAACACTGGGGATCTTGCTATCGACTGCGTTTAAGATCAGATACAAAGA 532
Query 420 GGCACTAACAAAAGTATACACAGCAGCTCACATAACAGCTTCCAAGTACTTGTCGTTTTT 479
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 GGCACTGACAAAAGTATACACAGCAGCTCACATAACAGCTTCCAAGTACTTGTCGTTTTT 592
Query 480 GACAAAAGAAGAAACAAACTTGTATGAAGCAGCACACTTGTCGATGACAGCCTTCAAGAA 539
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 593 AACAAAAGAAGAAACAAACTTGTATGAAGCAGCTCACTTGTCGATGACAGCCTTCAAGAA 652
Query 540 GTGGAGAACAGGTGGACCTAGATTCCAGAGAGCTTCAATACTCGGAAGAAAACGCAAGGA 599
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 GTGGAGAACAGGTGGTCCTAGATTCCAGAGAGCTTCAATACTCGGAAGAAAACGCAAGGA 712
Query 600 TTCTGATTAAGTACCCTAAAACTCTTTATCCTCATCCTTACCAATAGGGTGGTTGTGTTA 659
|||| ||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 713 TTCTAATTAAGTTCCCTAAAACTCTTTATCCTCATCCTTACCAAGAGGGTGATTGTGTTA 772
Query 660 TGTAAGTTATAACATGTCAAAATGATGCAACGGCAACACATTTGATTATGGTCTGAATCA 719
| | |||||||||||||||||||||||||| ||||||| | ||||||||||||||||
Sbjct 773 TATTAGTTATAACATGTCAAAATGATGCAATGGCAACA--T---ATTATGGTCTGAATCA 827
Query 720 AATTGCAAATCCTTTTGTGTTATGTTCTCTTTAGTAAACTCA 761
||||||||||||||||||||||||||||||| ||||||||||
Sbjct 828 AATTGCAAATCCTTTTGTGTTATGTTCTCTTCAGTAAACTCA 869
> AT3G55490.1 | Symbols: | GINS complex protein | chr3:20572024-20573682
REVERSE LENGTH=816
Length=816
Score = 1044 bits (565), Expect = 0.0
Identities = 686/742 (92%), Gaps = 17/742 (2%)
Strand=Plus/Plus
Query 1 GACCGCGAATTTAATCTCAAGGGTAAGGTGGTGTGGAGCCAGCCTTAGGGGATGGCCAAG 60
||||||||||||||||| |||| |||||||||||| | |||| |||||||||||| |||
Sbjct 61 GACCGCGAATTTAATCTGAAGGTTAAGGTGGTGTGAAATCAGCGTTAGGGGATGGCGAAG 120
Query 61 TATTTTGACATTGATGACATACTTATAGAGGAAGAGTTTGTACCGGTTTTGTTCCATAAA 120
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 TACTTTGACATTGATGACATACTTATAGAGGAAGAGTTTGTACCGGTTTTATTCCATAAA 180
Query 121 ACAGCAAACGGAGTGACTATTGATCCAAGTGCAGAAACAAATTGTGCTGAACAAGGCTCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACAGCAAACGGAGTGACTATTGATCCAAGTGCAGAAACAAATTGTGCTGAACAAGGCTCT 240
Query 181 AAAGTTGAACTTCCCTTCTGGCTTGCTCATGAGTTGCACTTGAGACAAGCTGTTACCATA 240
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 241 AAAGTTGAACTTCCCTTCTGGCTTGCTCATGAGTTGCATTTGAGGCAAGCTGTTACCATA 300
Query 241 AACCTTCCTCCCTGCTTCGACCAAAAGACGAGGCTTGAAGTTCAGGCTGATGCAGCATAC 300
|||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 301 AACCTTCCTCCCTGTTTTGACCAAAAGACGAGGCTTGAAGTTCAGGCTGATGCTGCATAC 360
Query 301 GTCGATCTTAGATCTCGCTGTCCTTATTTTTATGAATTCGGATGCAAGTTAGAGCCACTG 360
|||||||||||||| || ||||| || ||||||||||| ||||||||| |||||||||||
Sbjct 361 GTCGATCTTAGATCGCGATGTCCATACTTTTATGAATTTGGATGCAAGATAGAGCCACTG 420
Query 361 GTTACAGATAGAACACTTGGGA-TCTTGCTATCGACTGCGTTTAAGATCAGATACAAAGA 419
|| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 421 GTCACAGATAGAACACT-GGGAATCTTGCTATCGACTGCGTTTAAGATCAGATACAAAGA 479
Query 420 GGCACTAACAAAAGTATACACAGCAGCTCACATAACAGCTTCCAAGTACTTGTCGTTTTT 479
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GGCACTGACAAAAGTATACACAGCAGCTCACATAACAGCTTCCAAGTACTTGTCGTTTTT 539
Query 480 GACAAAAGAAGAAACAAACTTGTATGAAGCAGCACACTTGTCGATGACAGCCTTCAAGAA 539
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 540 AACAAAAGAAGAAACAAACTTGTATGAAGCAGCTCACTTGTCGATGACAGCCTTCAAGAA 599
Query 540 GTGGAGAACAGGTGGACCTAGATTCCAGAGAGCTTCAATACTCGGAAGAAAACGCAAGGA 599
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GTGGAGAACAGGTGGTCCTAGATTCCAGAGAGCTTCAATACTCGGAAGAAAACGCAAGGA 659
Query 600 TTCTGATTAAGTACCCTAAAACTCTTTATCCTCATCCTTA-CCAATAGGGTGGTTGTGTT 658
|||| ||||||| ||||| |||||||| | |||| ||| ||||||||||| ||||
Sbjct 660 TTCTAATTAAGTTCCCTATAACTCTTTCTTATCATAATTATCCAATAGGGTGATTGT--- 716
Query 659 ATGTAAGTTATAACA-TGTCAAAATGATGCAAC-GGC-AACA--CATTTGATTATGGTCT 713
| | | | |||||| | ||||||||||| ||| || |||| |||||||||||||| |
Sbjct 717 A-GCA--T-ATAACAATCTCAAAATGATGTAACTGGGTAACATACATTTGATTATGGT-T 771
Query 714 GAATCAAATTGCAAATCCTTTT 735
|| |||||||||||| ||||||
Sbjct 772 GAGTCAAATTGCAAA-CCTTTT 792
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38730527337
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5