BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485977
Length=2124
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55510.1 | Symbols: RBL | Noc2p family | chr3:20578978-20582... 2998 0.0
> AT3G55510.1 | Symbols: RBL | Noc2p family | chr3:20578978-20582405
FORWARD LENGTH=2227
Length=2227
Score = 2998 bits (1623), Expect = 0.0
Identities = 1991/2159 (92%), Gaps = 63/2159 (3%)
Strand=Plus/Plus
Query 1 TCTCAAATTCCTCTGTGCTTTCGATTCTTACCGGTAAATTTTTCTTATTTTACTTCTCTT 60
|||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||
Sbjct 58 TCTCAAATTCCTCTGTGCTTTCGATTCTTACCAGTGAATTTTTCTTATTTTACTTATCTT 117
Query 61 ATGCTCGTATTTAGAGGAATTGAGCAAAACCCTAGTTGTTTAATT--GTCAAATTTGTAG 118
|||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 118 ATGCTCGTATTTGGAGGAACTGAGCAAAACCCTAGTTGTTTAATTGGGTCAAATTTGTAG 177
Query 119 ATTGAGAATCTGAATTTATCGACCTAGTTATTGAATCTTTGTTTCCTCGAGTTGATACCT 178
|||||||||| ||||||||||||||||||||||| ||| |||||||||||||
Sbjct 178 ATTGAGAATCCAAATTTATCGACCTAGTTATTGAA--------TCC-CGAGTTGATACCT 228
Query 179 AGAAACCCTTTTGCAGTCGCAGTCGCAGTAAAATGGGTAAGTTGGGGAAGAAAGCTAGGA 238
|||||||| ||| | ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 229 AGAAACCC-TTT----T-GCAGTCGCAGTAAAATGGGTAAGCTGGGGAAGAAAGCTAGGA 282
Query 239 AATTTGCCAAGAAAAATCTCCAGTCTGTTGAGAAACGAAACAGAAAGCTGAAGCCTTTTT 298
||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 283 AATTTGCCAAGAAAAATCTCCAGTCTGTTGAGAAACGAAGCAGAAAGCTCAAGCCTTTTA 342
Query 299 TCAAGAAGAAATTTGCAAAGAGAAATGAGCGTCACCAAGTGGgagatgaagagaagaaga 358
||||||||||||||||||||||||||||||||||||||| |||||| || || ||||||
Sbjct 343 TCAAGAAGAAATTTGCAAAGAGAAATGAGCGTCACCAAGCAGGAGATAAACAGGAGAAGA 402
Query 359 aggtagagcaacagcctaagaagagatgtcaagaagaagaaTTTCAGGATATATCAATAG 418
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 403 AGGTAGAGCAACAACCTAAGAAGAGATGTCAAGAAGAAGAATTTCAGGATATAGCAATAG 462
Query 419 ATGCAGTATTCGGCAAGGATGATGATGAATTTCTCCGCGATTGTGATTCAGATAGTGATG 478
||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 463 ATGCAGTATTCGGAAAGGATGATGATGAAGTTCTCCGCGATGGTGATTCAGATAGTGATG 522
Query 479 GATATCTGGATGAGTTGGTAGATGAAGCTGACTCAGATATAATGAAGCACAAAGTACTCT 538
|||||||||||||||||||| ||||| ||||||||||||| |||||| |||||||||||
Sbjct 523 GATATCTGGATGAGTTGGTAAATGAAACTGACTCAGATATTATGAAGTGCAAAGTACTCT 582
Query 539 CAGGATCTGTTTTAAG-CACTTGCTGTGAC-CGAGTTGATGAGAAGCAGTCTG-TCCAGG 595
|| ||||| |||| || ||||||||||||| | |||||| || |||||| || |||| |
Sbjct 583 CAAGATCT-TTTTTAGCCACTTGCTGTGACATG-GTTGATAAGGAGCAGTATGTTCCA-G 639
Query 596 CATTAATAAGTTTGTTAAATTGGTATCGAGCTGCATGTCATTATGGGCACGAACCATCAG 655
|||| | || ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 640 CATTGGTTAGATTGTTAAATTGGTATCGAGCTGCATGTCAATATGGGCACGAACCATCAG 699
Query 656 GAATTCCGAGGCCTGATATATACTATGACATAGAAGACAGTGAGACATTTGCTAAGGTCA 715
| ||| | |||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 700 GGATTGCTAGGCCTAATATATACTATGACATAGAAGACAGTGAGACATTTGCCAAGGTCA 759
Query 716 TGATTTTTATGCTCCAAAAAGCTGATCACACTTTCAGGAGTATCCTGGGATTATCAGACT 775
| |||||| | ||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 760 TAATTTTTGTCCTCCAAAAAGCTGATCACACTTTTAGGAGTATCCTGGGATTATCAGATT 819
Query 776 CCAGTACTAAGGAGAAGATTTTGAAGTTGAAGAACAACCCAAAATGGGATAGTTTAAAAC 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 820 CCAGTACTAAGGAGAAGATTTTGAAGTTGAAGAACAACCCAAAATGGGATAGTTTAAAAC 879
Query 836 CACTGGTCAAATCTTT-TGTTCGAAGTACTTTGCATCTTGTTAAGCAGGCAGCAGATTTG 894
|||||||||||||||| | |||||||||| |||||||||||||||||||||| ||| |||
Sbjct 880 CACTGGTCAAATCTTTCT-TTCGAAGTACCTTGCATCTTGTTAAGCAGGCAGGAGACTTG 938
Query 895 GAGATAATAGT-TTTTGCTCTTACCCAACTTAGAGTTTCTATCGTGTTTCTT-GCCGCAT 952
||||||||| | |||| | ||||||||||||||||| |||||||||||| || |||||||
Sbjct 939 GAGATAATA-TCTTTTACCCTTACCCAACTTAGAGTCTCTATCGTGTTT-TTGGCCGCAT 996
Query 953 TTCCAGATCTTCTGAAAAAATTGATCAAGATATCTGTTCATCTGTGGGTAACCGGTGAAG 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 997 TTCCAGATCTTCTGAAAAAATTGATCAAGATATCTGTTCATCTGTGGGTAACCGGTGAAG 1056
Query 1013 AGACGCTATCGCAGCAGGCTTTTCTAATCTTGAAAGACATCAGTATGGTTTTTAACACAG 1072
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||| | |
Sbjct 1057 AGACTATATCGCAGCAGGCTTTTCTAATCTTAAAAGACATCAGTATGGTTTTTAACTCGG 1116
Query 1073 AATGCTTTGATACCTGCTTAATCAGCATGTACAAAGCCTTTCTACATGACTGTGATATTC 1132
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1117 AATGCTTTGATTCCTGCTTAATCAACATGTACAAAGCCTTTCTACATGACTGTGATATTC 1176
Query 1133 CAAAGGCAAATTCAGAACAACGTTTGCCGTTCCTCAGAGATTCCCTTGTTGAGCTATGCT 1192
|||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||
Sbjct 1177 CAAAGGCAAATTCAGAACAACG--T-CCGTTCCTCAGAGATTCTCTTGTTGAGCTATGCT 1233
Query 1193 CCCAAGATATGCAGAAGTCTTATACCAAGGCCTCTGTTTCTATTACACAACTTGCCAAGT 1252
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1234 CTCAAGATGTGCAGAAGTCTTATACCAAGGCCTCTGTTTCTATTACACAACTTGCCAAGT 1293
Query 1253 TATTGAAAATGGCTCTCACTACAAAGAATAAGGAAGCCGTCGAGAAGATACATAGCGGGC 1312
||||||| ||||||||| ||||||||||||||||||| || || ||||||||||| |||
Sbjct 1294 TATTGAAGATGGCTCTCGCTACAAAGAATAAGGAAGCTGTTGAAAAGATACATAGTGGGG 1353
Query 1313 AGTACACAAATTGTGTTGATCTCTGGGTAAATTTTATTGCTGCCAACGTTCAGGATTGTG 1372
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1354 AGTACATAAATTGTGTTGATCTCTGGGTAAATTTTATTTCTGCCAACGTTCAGGATTGTG 1413
Query 1373 ATATCCAGCCTCTGCTTTATACTATAGTTCAGGTTATAAATGGAGTTGCTCAACTAATTA 1432
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1414 ATCTCCAGCCTCTGCTTTATACTATAGTTCAGGTTATAAATGGAGTTGCTCAACTAATTA 1473
Query 1433 TTGGACCACGTTACCTGCTCCTAAGGGTTAAATGTATCCAATGGCTCAATCATCTCTCTC 1492
|||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||
Sbjct 1474 TTGGACCACGTTACCTGCTCCTAAGGGTCAAATGTATCCACTGGCTCAACCATCTCTCTC 1533
Query 1493 GTACAAGCGGTATATTCATTCCCATTGCATCGTTGGTATTGGATATGTTGGAATATAAAA 1552
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1534 GTACAAGCGGTATATTCATTCCCATTGCATCATTGGTATTGGATATGTTGGAATATAAAA 1593
Query 1553 CCGCAAAGGATGGTGAAAAGCAAGAACAGAAGCTTGAAGCTGTCTCAACCGTAAAGCTTC 1612
|| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1594 CCACAAATGATGGTGAAAAGCAAGAACAGAAGCTTGAAGCTGTCTCAACCGTAAAGCTGC 1653
Query 1613 CTAAGAATTGGTTAAAGTCCCAAAATTTCCAAGAACAGTGTGTCTTTTCTGTGATTGAAC 1672
||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 1654 CTAAGAATTGGTTGAAGTCCCAAAACTTCCAAGAACAGTGTATCTTTTCTGTGATTGAAC 1713
Query 1673 TGCTTGCTGTCCACTTTGCTCAATGGAGCTTCCACATATCATTTCCAGATCTTGCTACTA 1732
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
Sbjct 1714 TGCTTGCTGTCCACTTTGCTCAATGGAGCTTCCATATATCATTTCCAGATCTTGCAACGA 1773
Query 1733 TTCCCGTCATGAGGCTGAAGAAATTTCACGAGAGAAGCACTATGGAAGGGTTGAAGCGGG 1792
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1774 TTCCCGTCATGAGGCTGAAGAAATTTCACGAGAGAAGCACTATGGAAGGATTGAAGCGGG 1833
Query 1793 TGGTGAAACGCTTTATAGAGCAGGTAGAGTCGAACATTGAGTTTGTTCAAAGGAAGAGAG 1852
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1834 TGGTGAAACGCTTTATCGAGCAGGTAGAGTCGAACATTGAGTTTGTTCAGAGGAAGAGAG 1893
Query 1853 ATGACGTGACTTTTTCTCCAAACGATCAACAATCCGCAGACACGTTTATGCAGCTTGAAA 1912
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1894 ATGACGTGACTTTTTCTCCAAACGATCAACAATCTGCAGACACGTTTATGCAGCTTGAAA 1953
Query 1913 AGCAAAATACGAATGCTCCTTATACACAATACTATCATAGCATCATAGACAAAGCTCTTG 1972
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1954 AGCAAAATGCGAATGCTCCTTATACACAATACTATCAAAGCATCATAGACAAAGCTCTTG 2013
Query 1973 GAACAaagaagaagaagaagaagagaGGCAAGTG-TGGGAACTAAT-ATATTTCCCTTGG 2030
||||||| ||||||||||||||| ||| || ||| | | | | || | ||| ||| |||
Sbjct 2014 GAACAAACAAGAAGAAGAAGAAGTGAG-CA-GTGATTGCACCAAAGCAGATT-CCCATGG 2070
Query 2031 AACTTGC-CTAAT-TTTGTTCACCATTTTTG-T-T-GTTT-----------G-G----CT 2069
||| | | | ||| ||||||||||||||||| | | |||| | | ||
Sbjct 2071 AACAT-CTCAAATGTTTGTTCACCATTTTTGCTGTCGTTTATTTATTCTTAGTGTTGGCT 2129
Query 2070 TTCATGAATTATTTTCGAAAAGATCGA-A--TACATTT-ATGCAAAACTTTAGTGTAAT 2124
||||||||||||||||||||||||| | | ||||||| |||||||||||| |||||||
Sbjct 2130 TTCATGAATTATTTTCGAAAAGATCTACAAATACATTTTATGCAAAACTTTGGTGTAAT 2188
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105320743410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5