BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485979
Length=1008
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55520.1 | Symbols: | FKBP-like peptidyl-prolyl cis-trans i... 1391 0.0
AT3G55530.1 | Symbols: SDIR1 | RING/U-box superfamily protein |... 243 3e-63
> AT3G55520.1 | Symbols: | FKBP-like peptidyl-prolyl cis-trans
isomerase family protein | chr3:20593661-20595345 FORWARD LENGTH=1017
Length=1017
Score = 1391 bits (753), Expect = 0.0
Identities = 945/1031 (92%), Gaps = 40/1031 (4%)
Strand=Plus/Plus
Query 1 AACACGTGACGTCGAAAGCATCGGATT---------AG-AGAAGAAGAA-AAGCCGATTC 49
||||||||||||| ||||||||||||| || |||||||||| ||||||||||
Sbjct 4 AACACGTGACGTCAAAAGCATCGGATTAGAGAAAGAAGAAGAAGAAGAAGAAGCCGATTC 63
Query 50 TAGGAAAATTCTCG--ACTCATTTGGGCAGTCTATGGCCACCGATCTCTACGGCGATCTC 107
|||||||| || || |||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 64 TAGGAAAAATC-CGATACTC-TTTGGACAGTCTATGGCCACCGATCTCTACGGCGATCTC 121
Query 108 CTTCCGGTTATCACTTCGTCACTACACATTTACTTCTTCCGTTTTCGTATCCGATCAG-A 166
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||| | |
Sbjct 122 TTTCCGGTTATCACTTCGTCACTACACATTTGCTTCTTCCGTTTTCGTATCGGATC-GAA 180
Query 167 GACTATTCATCTTTCCTCGAATCGGGTTTCTTTGAACCTTTGAAGCTATGGGGGATGCGA 226
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 181 TACTATTCATCTTTCTTCGAATCGGGTTTCTTTGAACCTTTGAAGCTATGGGTGATGCAA 240
Query 227 TCGATTTGACTGGAGATGGTGGAGTCTTGAAAGAGATTGTAAGGAGAGCCAAACCTGATG 286
||||||||| |||||||||||| ||||||||| ||||||||||||| |||||||||||||
Sbjct 241 TCGATTTGAGTGGAGATGGTGGCGTCTTGAAAAAGATTGTAAGGAGTGCCAAACCTGATG 300
Query 287 CTGTTTCACCCTCTGATGATCTTCCTGTTGTCGATGTTCATTATGAGGGTATATTGGCTG 346
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 301 CTATTTCACCCTCTGATGATCTTCCTGTTGTCGATGTTCATTATGAGGGTATCTTGGCTG 360
Query 347 AAGACGAAAAGGTCTTT-GACACTACACGCGAAGACAATCTGGTTTTCTCTTTTGAGTTA 405
||||||||||||| ||| |||||||| |||||||||||||| |||||||| |||||||||
Sbjct 361 AAGACGAAAAGGT-TTTCGACACTACTCGCGAAGACAATCTTGTTTTCTCCTTTGAGTTA 419
Query 406 GGAACAGCCAGTGTTATCCGATCTTGGGACATTGCACTTAAAACCATGAAGGTTGGAGAA 465
||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 420 GGAACAGGCAGTGTTATCCGTTCTTGGGACATTGCTCTTAAAACCATGAAGGTTGGAGAA 479
Query 466 ATTGCAAAACTCACATGTAAGCCAGAATATGCTTACGGAAGAGCCGGATCTCCTCCCGAC 525
|||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 480 GTTGCAAAAATTACATGTAAGCCAGAATATGCTTACGGAAGAGCCGGGTCTCCTCCCGAC 539
Query 526 ATCCCACCGGATGCAACTTTGATCTTT-GAGGTGGAATTGGTTGCTTGTAGACCGAGGAA 584
|||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 540 ATCCCACCTGATGCAACTTTGAT-TTTCGAGGTGGAATTGGTTGCTTGTAGACCGAGGAA 598
Query 585 AGGTGCTAGTGTTGGAAGTGTTTCTGAAGAGAGAGCCAGGCTAGAAGATCTGAAGAAGCA 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AGGTGCTAGTGTTGGAAGTGTTTCTGAAGAGAGAGCCAGGCTAGAAGATCTGAAGAAGCA 658
Query 645 AAGAGAGATTGCTGCAGCTGCTAAAGAGGATGATAAGAAAAAGAGAGAAGAAGCAAAAGC 704
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 659 GAGAGAGATTGCTGCAGCTGCGAAAGAGGATGATAAGAAAAAGAGAGAAGAAGCAAAAGC 718
Query 705 TGCTGCAGCTGCTAGGATTCAAGCTAAGCTAGACGCTaagaagggtcaaggcaaaggaaa 764
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 719 TGCTGCAGCTGCTAGGATTCAAGCTAAGCTAGACGCTAAGAAAGGTCCAGGCAAAGGAAA 778
Query 765 aggcaaaggcaaagctaaataagtcaaaagcaaaaTTATGTAACTCTTTAATACTACTAT 824
||||||||||||||||||||||||| || |||||| | | | || | | |||||||
Sbjct 779 AGGCAAAGGCAAAGCTAAATAAGTCGAATGCAAAA----G-A-C-CTGTCA--CTACTAT 829
Query 825 TTCATGATGAATCTAAATCAAACTTTTGGAAAGGCAGAGTCATCCA-TCAGTT-ATATC- 881
|||||||||||||||||||||||||||||||||| ||||||||| | | | | ||||
Sbjct 830 TTCATGATGAATCTAAATCAAACTTTTGGAAAGGGAGAGTCATC-AGTTACATCATATTG 888
Query 882 A-T-ATTGACCGTTACATGATTTGTTTGGGATTTTAATTCGCACACACATTAATAACACA 939
| | ||||||| |||||||||||||||||| ||| ||||||||| ||||||||||||| |
Sbjct 889 AGTTATTGACCATTACATGATTTGTTTGGGGTTT-AATTCGCACGCACATTAATAACATA 947
Query 940 A-CAAGTGT-CGGAAACCAAACTTTTTAAACCATGTCGGAAGCATCATCATCGATCTCAT 997
| ||||||| || ||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 948 AACAAGTGTTCG-AAACCAAACTTTTCAAACCATGTCGGAAGCATCATCATCAATCTCAT 1006
Query 998 CTTGTTCTTGC 1008
|||||||||||
Sbjct 1007 CTTGTTCTTGC 1017
> AT3G55530.1 | Symbols: SDIR1 | RING/U-box superfamily protein
| chr3:20595126-20597603 REVERSE LENGTH=1164
Length=1164
Score = 243 bits (131), Expect = 3e-63
Identities = 178/199 (89%), Gaps = 10/199 (5%)
Strand=Plus/Minus
Query 817 ACTACTATTTCATGATGAATCTAAATCAAACTTTTGGAAAGGCAGAGTCATCCA-TCAGT 875
|||||||||||||||||||||||||||||||||||||||||| ||||||||| | | |
Sbjct 1140 ACTACTATTTCATGATGAATCTAAATCAAACTTTTGGAAAGGGAGAGTCATC-AGTTACA 1082
Query 876 T-ATATC-A-T-ATTGACCGTTACATGATTTGTTTGGGATTTTAATTCGCACACACATTA 931
| |||| | | ||||||| |||||||||||||||||| ||| ||||||||| |||||||
Sbjct 1081 TCATATTGAGTTATTGACCATTACATGATTTGTTTGGGGTTT-AATTCGCACGCACATTA 1023
Query 932 ATAACACAA-CAAGTGT-CGGAAACCAAACTTTTTAAACCATGTCGGAAGCATCATCATC 989
|||||| || ||||||| || ||||||||||||| |||||||||||||||||||||||||
Sbjct 1022 ATAACATAAACAAGTGTTCG-AAACCAAACTTTTCAAACCATGTCGGAAGCATCATCATC 964
Query 990 GATCTCATCTTGTTCTTGC 1008
||||||||||||||||||
Sbjct 963 AATCTCATCTTGTTCTTGC 945
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49380166501
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5