BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485991
Length=1681
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55630.3 | Symbols: ATDFD, DFD, FPGS3 | DHFS-FPGS homolog D ... 2671 0.0
> AT3G55630.3 | Symbols: ATDFD, DFD, FPGS3 | DHFS-FPGS homolog
D | chr3:20636669-20639492 FORWARD LENGTH=1692
Length=1692
Score = 2671 bits (1446), Expect = 0.0
Identities = 1612/1692 (95%), Gaps = 12/1692 (1%)
Strand=Plus/Plus
Query 1 AGATTAAACTGAAAGTTAGGACCTTTCATTTCCAATCCCTAAACCCATTTCTCTACGATA 60
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 AGATTAAACTGAAAGTTAGGACCTTTCATTTCCAATCTCTAAACCCATTTCTCTACGATT 60
Query 61 AGAGAAACTGACATCAAAATCCAAAGTCGGGAAA-TTTTGGATTTGTTCTTCTTCTATGG 119
|||||| ||||||||||||| ||| | |||||| |||||||||||||||||||||||||
Sbjct 61 AGAGAAGCTGACATCAAAATTGAAACTTGGGAAATTTTTGGATTTGTTCTTCTTCTATGG 120
Query 120 CAACTGAAGACGAAGGTGATTTGTCAGCTCGTTACCAGAACACGTTGGATGCATTGTCGT 179
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CAACTGAAGACGATGGTGAATTGTCAGCTCGTTACCAGAACACGTTGGATGCATTGTCGT 180
Query 180 CTTTGATCACAAAACGCGGCCGTTTTGCTAGTAACAACCAATCTCACCGATTCCGTTTGC 239
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 181 CTTTGATCACAAAACGTGGCCGTTTAGCTAGTAACAACCAATCTCACCGATTCCGTTTGC 240
Query 240 TCTTTCATTATCTCAAGGTTCTTGAGCTTGAAGATGCAGTCTCACAAATGAAAATTATTC 299
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 241 TCTTTCATTATCTCAAGGTTCTTGAGCTTGAAGATGCAGTTTCACAAATGAAAATCATTC 300
Query 300 ATGTGGCTGGAACTAAAGGAAAGGGATCAACATGTACATTTGCGGAATCTATTCTTCGTT 359
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 301 ATGTGGCCGGAACTAAAGGAAAGGGATCAACATGTACATTTGCGGAGTCTATTCTTCGTT 360
Query 360 GTTACGGTCTTCGAACTGGTCTCTTCACATCTCCTCACTTAATCGATGTCCGAGAGAGAT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTTACGGTCTTCGAACTGGTCTCTTCACATCTCCTCACTTAATCGATGTCCGAGAGAGAT 420
Query 420 TCCGTCTTAATGGCATTGAGATAAGCCAGGAGAAATTTGTGGACTACTTTTGGTGTTGCT 479
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 421 TCCGTCTTAACGGCATTGAGATAAGCCAGGAGAAATTTGTGAACTACTTTTGGTGTTGCT 480
Query 480 TTCATAAGCTCAAGGAGAAAACCAGCAATGAAGTTCCAATGCCTACTTACTTCTGCTTCC 539
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 481 TTCATAAGCTCAAGGAGAAAACCAGCAATGAGGTTCCAATGCCTACTTATTTCTGCTTCC 540
Query 540 TTGCATTGTTAGCTTTCAAGATTTTCGCAACAGAACAGGTTGATGTTGTTATACTAGAAG 599
|||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 541 TTGCTTTATTAGCTTTCAAGATTTTCACAACAGAACAGGTTGATGTTGTTATACTAGAAG 600
Query 600 TTGGCTTAGGTGGGAGGTTTGATGCGACTAATGTGATTCAGAAACCTGTCGTCTGTGGTA 659
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTGGCTTAGGTGGGAGATTCGATGCGACTAATGTGATTCAGAAACCTGTCGTCTGTGGTA 660
Query 660 TTTCTTCTCTAGGGTATGACCATATGGAGATTCTTGGATACACGCTTGCTGAAATCGCTG 719
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 661 TTTCTTCTCTAGGGTATGACCATATGGAGATTCTTGGATACACACTTGCTGAAATTGCTG 720
Query 720 CAGAGAAAGCCGGTATCTTCAAGAGTGGAGTCCCGGCTTTTACAGTGCCTCAACCTGATG 779
||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||
Sbjct 721 CAGAGAAAGCCGGTATCTTCAAGAGTGGAGTTCCTGCTTTTACAGTGGCTCAACCTGATG 780
Query 780 AAGCGATGCGTGTACTCAACGAAAAAGCTTCAAAATTGGAGGTGAATCTTCAGGTGGTGG 839
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AAGCAATGCGTGTACTCAATGAAAAAGCTTCAAAATTGGAGGTGAATCTTCAGGTGGTGG 840
Query 840 AACCATTGGACTCAAGCCAGAGACTCGGTCTTCAAGGCGAACATCAATATCTAAACGCTG 899
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 841 AACCGTTGGACTCAAGCCAGAGACTCGGGCTTCAAGGCGAACATCAATATCTAAACGCTG 900
Query 900 GTCTTGCTGTTGCGTTGTGTTTTACATTTCTAAAAGAGATTGGTATTGAGGAGAAGAATT 959
||||||||||||||||||| | ||||||||| |||||||||||||||||||| ||||||
Sbjct 901 GTCTTGCTGTTGCGTTGTGCTCTACATTTCTTAAAGAGATTGGTATTGAGGACAAGAATG 960
Query 960 GTCTGAATCAAACAAACGGTTTACCCGCAAAATTCATCTCTGGATTGTCGAATGCTTATT 1019
|| || |||| |||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 961 GTTTGGATCAGACAAACGGTTTACCCGAAAAATTCATCTCTGGATTGTCAAATGCTTATT 1020
Query 1020 TGATGGGACGAGCTATGGTAGTGCCTGATTCAGAACTCCCTGAAGAGATTGTGTATTACC 1079
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TGATGGGACGAGCTATGATAGTGCCTGATTCAGAACTCCCTGAAGAGATTGTGTATTACC 1080
Query 1080 TTGATGGAGCTCATAGTCCCGAGAGCATGGTAGCTTGCGCTATATGGTTTTCAAAACAGA 1139
||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||
Sbjct 1081 TTGATGGAGCTCATAGTCCTGAAAGCATGGAAGCTTGCGCTATATGGTTTTCAAAACAGA 1140
Query 1140 TCAAACAAAACCAAGAAAGTAACCAGAAAAGATCAGAGCAGATACTCTTGTTCAATTGTA 1199
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 TCAAACAAAACCAAGAAAGAAACCAGAAAAGATCAGAGCAGATACTCTTGTTCAATTGTA 1200
Query 1200 TGTCAGTTCGTGACCCGAGTTTGCTTCTTCCGCGATTAAGGAGCAAATGCATTGATCAAG 1259
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1201 TGTCTGTTCGTGACCCGAGTTTGCTTCTTCCGCGATTAAGGAGTAAATGCATTGATCAAG 1260
Query 1260 GAGTTGATTTCAAGAGAGCCATTTTTGTGCCAAACGTATCAGTGTACAACCAAGTGGGTT 1319
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 1261 GAGTTGATTTCAAGAGAGCCGTTTTTGTGCCAAACGTATCAGTGTACAACCAAGTGGGAT 1320
Query 1320 CTTC-ATCAGAGGTTGCCACACGTGTCGAGTCGATGTCGTGGCAGTTGGGTCTTCAGAGG 1378
|||| | || | |||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1321 CTTCGA-CAAACGTTGGCACACGTGTCGAGTCGATGTCGTGGCAGTTCGGTCTTCAGAGG 1379
Query 1379 CTTTGGGAGAGTTTGGCTCGAGGTGAAGCAAGATCTAATTCAAGAAGTGATTCAAAAGGC 1438
||||||||||||| |||||||||||||||| ||||||||||| ||||||||| ||||||
Sbjct 1380 ATTTGGGAGAGTTTAGCTCGAGGTGAAGCAAAATCTAATTCAAAAAGTGATTCTAAAGGC 1439
Query 1439 AACGGAGAAGACAAGAGTTTCGTTTTCTCGTCACTTCCTTTGGCTGTTGACTGGCTCCGG 1498
|| | |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1440 AAAGAAGAAGAGAAGAGTTTCGTTTTCTCGTCACTTCCTGTGGCTGTTGACTGGCTCCGG 1499
Query 1499 GACAATGCTCGCCAAAGTAAACAAGTTCGTTTTCAGGTGTTGGTAACTGGTTCATTACAT 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 GACAATGCTCGCCAAAGTAAACAAGTTCGTTTTCAGGTGTTGGTAACTGGTTCATTACAT 1559
Query 1559 TTGGTGGGTGATCTCTTGAGATTAATCAAGAAATGAATATGTTTCTGCCATGTATTCTTG 1618
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1560 TTGGTGGGTGATCTCTTGAGATTTATCAAGAAATGAATATGTTTCTGCCATGTATTCTTG 1619
Query 1619 GCCAATCTCTGCCTGTAAT-A--AT----CTGA-A-CATGATTTAACAAAAGAAAAGAAA 1669
|||||||| |||||||||| | || || | | ||||||||||||||||||||||||
Sbjct 1620 GCCAATCTTTGCCTGTAATGACTATATATCTCACAACATGATTTAACAAAAGAAAAGAAA 1679
Query 1670 AGATATTTCGAC 1681
||||||||||||
Sbjct 1680 AGATATTTCGAC 1691
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83081901975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5