BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485995
Length=916
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55646.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1114 0.0
AT2G39855.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 171 1e-41
> AT3G55646.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G39855.2); Has 35333
Blast hits to 34131 proteins in 2444 species: Archae - 798;
Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531;
Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
chr3:20644896-20646655 FORWARD LENGTH=1022
Length=1022
Score = 1114 bits (603), Expect = 0.0
Identities = 864/977 (88%), Gaps = 69/977 (7%)
Strand=Plus/Plus
Query 1 ATCTTCACGTGTCTTCTCTTTTGTTTCATCACATGTTCTCTCCTTTCTTCACCTCTCTCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 17 ATCTTCACGTGTCTTCTCTTTTGTTTCATCACATGTTCTCTCCTTTCTTCACCTCTCTCT 76
Query 61 GCAAATTTAATCCTTTCTCTTTTCGGCACT-CCTAGG---C-----CCTTTTCTTTAATT 111
||||||||||||||||||||||||||| | |||||| | ||||||||| |||
Sbjct 77 ACAAATTTAATCCTTTCTCTTTTCGGCA-TCCCTAGGCCCCTTTGGCCTTTTCTTAAATA 135
Query 112 CATCTTTCA-AAACCAAAAAGTTT-AATATATACATTTTCACCAACACAAT-TTTGGGAT 168
||||| ||| ||| |||||||||| ||| |||||||| |||| |||| || ||||| ||
Sbjct 136 CATCTCTCAGAAA-CAAAAAGTTTGTATACATACATTTCCACCTACAC-ATCTTTGGCAT 193
Query 169 GGACAAGAACAAG---AAGAAGAAGATTGTTTCCG---------C-T--TCA--TCTTTC 211
||||||||||||| ||||| ||||||||||||| | | ||| ||||||
Sbjct 194 GGACAAGAACAAGAACAAGAAAAAGATTGTTTCCGCTTCATCTTCGTCCTCATCTCTTTC 253
Query 212 G--A-TC-AT-AT-T-TTTGGGCCAAGAGTCTCTTCTTCGTCTTCTTCATCGGCCACTGG 264
| | || || || | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 254 GTCATTCGATCATATATTTGGGCCAAGAGTCTCTTCTTCGTCTTCTTCATCGGCCACTGG 313
Query 265 ATTGTTCAAATCCATCTTCCCACCACCCTCTGCGGATCAGTTGGGGAGGCAAGTGGACTT 324
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 314 ATTGTTCAAATCCATCTTCCCACCACCCTCTGCAGATCAGTTGGGGAGGCAAGTGGACTT 373
Query 325 TGCAAGTCAAGGTGGACATGTGAAGTATCAATCTCCAAATGAGAGAGGAGAAAGAAGCAA 384
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 374 TGCAAGTCAAGGTGGACATGTGAAGTATCAATCTCCAAATGCGAAAGGAGAAAGAAGCAA 433
Query 385 CAAAAAGGAGAAAAAGAGTTACTATAATGAGGAAACAGAACCACCATGCCACTTGAGCTC 444
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 TAAAAAGGAGAAAAAGAGTTACTATAATGAGGAAACAGAACCACCATGCCACTTGAGCTC 493
Query 445 ATCACTTTACTATGGAGGCCAAGAGAAATATTCCTCCACAACGACTACCACCCATGATAC 504
||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 494 ATCCCTTTACTATGGAGGCCAAGAGACTTATTCCTCAACAACGACTACCACCCATGATAC 553
Query 505 TACTTACAAAAAAGATGGAGAGGAAGGCGATTCCAAAAGCGCATCAAGAGGAAACTGGTG 564
| | ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 554 T--T-ACAAAAAGGATGGAGAGGAAGGCGATTCCAAACGCGCATCAAGAGGAAACTGGTG 610
Query 565 GGAAGGGTCGCTTTATTACTAGCAATCCTGATTTAGGAGCACCTGTTAAGGTACATGCAT 624
|||||| ||||||||||||||||||||||| |||| |||||||||||||||| |||||||
Sbjct 611 GGAAGGTTCGCTTTATTACTAGCAATCCTGGTTTACGAGCACCTGTTAAGGTGCATGCAT 670
Query 625 GGTCTTATCTTTATATGAAATTTGAAGGGTCGCTAGCTATATAATAA-AAAG-AAAAT-- 680
||||||||||||||| ||||| |||||||||||||| || |||| || |||| |||||
Sbjct 671 GGTCTTATCTTTATACGAAATCTGAAGGGTCGCTAGATA-ATAAAAAGAAAGCAAAATTT 729
Query 681 --AAA---C-T-A-T-ATAAAGGTCCTTA-A-TT-A-TATATTGTCTAAAAGAAGAGGGG 727
||| | | | | | ||| | | | || | |||||||||||||||||||||||
Sbjct 730 CCAAATGTCCTTAATTACAAATTTAAA-AGAGTTTAGTATATTGTCTAAAAGAAGAGGGG 788
Query 728 CTTGTTCTTCACATGTTGATTCATTTTGTTTA-CGACAAATGCAA-CAACACTAAGAGAA 785
||||||||| |||||||||||||||||||||| |||||||||||| |||||| |||||||
Sbjct 789 CTTGTTCTTTACATGTTGATTCATTTTGTTTAACGACAAATGCAAACAACACGAAGAGAA 848
Query 786 GTCTCTTCCTGATGAAATTAATGTTTGGCTCCTTTTTCGTCAATTAATGTTTGTCTAATA 845
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 849 GTCTCTTCCTGATGAAATTAATGTTTGGCTCCTTTTTAGTCAATTAATGTTTGTCTAATA 908
Query 846 GTGTTTGTAAGGaaaaaaaTGATGTGTATAATAGAGTCTA-T-----GTACTTGGCTTAC 899
|||| ||||||| |||||||||| ||||||| || ||||| | |||||| ||||||
Sbjct 909 GTGTATGTAAGGGAAAAAATGATATGTATAACAGTGTCTACTACAATGTACTTAGCTTAC 968
Query 900 TTTAATGAATAATGGAT 916
|||||| ||||||||||
Sbjct 969 TTTAATAAATAATGGAT 985
> AT2G39855.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT3G55646.1); Has 35333
Blast hits to 34131 proteins in 2444 species: Archae - 798;
Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531;
Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
chr2:16637677-16639304 FORWARD LENGTH=1070
Length=1070
Score = 171 bits (92), Expect = 1e-41
Identities = 233/298 (78%), Gaps = 22/298 (7%)
Strand=Plus/Plus
Query 197 TCCGCTTCATCTTTCGATCATATTTTTGGGCCAAGAGTCTCTTC-TTCGTCTTCTTCATC 255
||| |||| || || |||||||||||||| ||||||||||| || |||| |||||||||
Sbjct 208 TCCTCTTCGTCGTTGGATCATATTTTTGGTCCAAGAGTCTC-TCACTCGTATTCTTCATC 266
Query 256 GGCCACTGGATTGTTCAAATCCATCTTCCCACCACCCTCTGCGGATCA-GTTGGGGAG-- 312
| || ||||||||||||||||||||||||||||| || |||| | | | ||||
Sbjct 267 AACAACAGGATTGTTCAAATCCATCTTCCCACCACCTTCAGCGG-TGACGCAAGGGAACT 325
Query 313 -G-CAAGTGGACTTTGCAAG-T-C-AAGG-TGGACATGTGAAGTATCA-ATCTCCAAATG 365
| ||||| || | | | | | | ||| | || | || | | | | |||||||||
Sbjct 326 TGACAAGTCGAAATGG-A-GCTGCCAAGTATCAACCTACAAATTTTGAGA-CTCCAAATG 382
Query 366 AGAGAGGAGAAAGAAGCAACAAA-AAGGAGAAAAAGAGTTACTATAA-TGAGGAAACAGA 423
| ||||| ||||| ||||| ||| ||||||| |||||||||| | || ||| |||||| |
Sbjct 383 AAAGAGGTGAAAGGAGCAA-AAATAAGGAGAGAAAGAGTTACCA-AAGTGAAGAAACACA 440
Query 424 ACCACCATGCCACTTGAGCTCATCACTT-TACTATGGAGGCCAAGAGAAATATTCCTC 480
|||||||||| ||||||||||||| | | ||||||||||||||||| || ||||||||
Sbjct 441 ACCACCATGCAACTTGAGCTCATC-CATATACTATGGAGGCCAAGATAACTATTCCTC 497
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44758624977
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5