BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485999
Length=1911
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55660.1 | Symbols: ATROPGEF6, ROPGEF6 | ROP (rho of plants)... 3038 0.0
> AT3G55660.1 | Symbols: ATROPGEF6, ROPGEF6 | ROP (rho of plants)
guanine nucleotide exchange factor 6 | chr3:20648942-20651388
REVERSE LENGTH=1947
Length=1947
Score = 3038 bits (1645), Expect = 0.0
Identities = 1835/1923 (95%), Gaps = 27/1923 (1%)
Strand=Plus/Plus
Query 1 AATAACTACTATTCTTCTTCTTCTCTATGATCTCTGCTTCCTTGTTTCTGGGTATCTaaa 60
||| |||| | |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 5 AATTACTATTCTTCTTCTTCTTCTCTATGATCTCTGCTTCCTTTTTTCTGGGTATCTAAA 64
Query 61 aaaaaTCAATCtttttttttgtttttGTTAGCGAAAATGGAGAATAATAGCTGTATTGGG 120
|||| |||||| ||| ||| ||||||||||||||||||||| ||||||||||||| |||
Sbjct 65 AAAACTCAATC--TTTATTTCTTTTTGTTAGCGAAAATGGAGGATAATAGCTGTATCGGG 122
Query 121 TTTGAAGGG-TCGAGAAGATTTGGTGAG---AGTAAACGTATCATTGGTTTGATTGACTC 176
|||| |||| |||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 123 TTTG-AGGGATCGAAAAGATTTGGTGAGACTAGTAAACGTATCATTGGTTTGATTGACTC 181
Query 177 AGTGACTGAGTCAACGACTGATTCAAGTCTTAGCAGCTCAAGTTGC-GGTGCTGGATCGA 235
|||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||
Sbjct 182 AGTGACTGAGTCAACGACTGATTCAAGTCTTAGCAGCTCAAGTT-CTGGTGTTGGATCGA 240
Query 236 GCTCCGGGAGGTCTTCTGTGGCGGAGAGATCTGTTTCTTCTCCGTCATCTCCTCCGACGA 295
||||||||||||||||||| || |||||||||| | | ||||| ||||||||||
Sbjct 241 GCTCCGGGAGGTCTTCTGTAGCTGAGAGATCTG-----T-T---TCATCACCTCCGACGA 291
Query 296 AATCGCAGATCCTTGGATGGCCGTTAGGGCAAGGCTCATGGAGGAAGAGTTCTGGTAAAA 355
|||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 292 AATCGCAGATTCTTGGATGGCCGTTAGGACAAGGTTCATGGAGGAAGAGTTCTGGTAAAA 351
Query 356 TGAAGAAGAAAACTCCGACAAAGATCGATGATTTCGGGTTTAAGAGAGTTGGAACAGAGA 415
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 352 TGAAGAAGAAAACTCCGACAAAGATCGATGATTTTGGGTTTAAGAGAGTTGGAACAGAGA 411
Query 416 CTTCAGAGATTGAGTTGTTGAAAGAGAGAATGGCGAAGTTGTTGCTTGGTGAAGATATGT 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 412 CTTCAGAGATTGAGTTGTTGAAAGAGAGAATGGCGAAGTTGTTGCTTGGTGAAGACATGT 471
Query 476 CTGGTTCTGGTGAAGGAGTTTGTCCTGCTTTGGCTATTTCAAACGCCATTACCAATCTCT 535
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 472 CTGGTTCTGGTGAAGGAGTTTGTCCTGCTTTGGCTATTTCTAATGCCATTACCAATCTCT 531
Query 536 ATGCTGCAATATTGGGACAACAATGGAGGTTAGAGCCAATCCCTAGTGAGAAAAAATCAA 595
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 532 ATGCTGCAATATTGGGACAACAATGGAGGCTAGAGCCAATCCCTAGTGAGAAAAAATTAA 591
Query 596 TGTGGAGAAGAGAAATCGAAGTTCTTCTTTCTGTTAGTGATCACATTGTTGAATTGGTAC 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 TGTGGAGAAGAGAAATCGAAGTTCTTCTTTCTGTTAGTGATCACATTGTTGAATTGGTAC 651
Query 656 CTTCCTTTCAGAATTTCCCCAATGGAAACAAGATTGAGGTGATGAATTGCAGACCAAGAT 715
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 652 CTTCCTTTCAGAATTTCCCCAATGGAAACAAGATTGAGGTGATGAACTGCAGACCAAGAT 711
Query 716 CAGATCTCTTTACTTGTCTTCCTGCTCTTAGGAAGCTAGACCATATGCTTATTGAAATAT 775
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 712 CAGATCTCTTTACTTGTCTTCCTGCTCTTAGGAAGCTAGACAATATGCTTATTGAAATAT 771
Query 776 TAGATAGTTTTGGAGAAACAGAGTTCTGGTACGTTGATCAAGGAATCGTAGCTGCGGAAT 835
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 772 TAGATAGTTTTGGAGAAACAGAGTTCTGGTACGTTGATCAAGGGATTGTAGCTGCGGAAT 831
Query 836 CTGCAAGGTCTAACTCTTTCCGTGAAGACGGAGACAAATGGTGGCTTCCGCTGCCGCGTG 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 CTGCAAGGTCTAACTCTTTCCGTGAAGACGGAGACAAATGGTGGCTTCCGCTGCCGCGTG 891
Query 896 TGCCATCCGATGGACTTACTGAGCAATCTAGGAAGAAACTGGATCATACTCGCGAATTTA 955
||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||| |
Sbjct 892 TGCCATCCGATGGACTTACCGAACAAACTAGGAAGAAACTGGATCATACTCGCGAATTCA 951
Query 956 CTAACCAAATCTTGAAAGCTTGTATGTCAATCAACAGCATTGCTTTAGCTGAAATGGAGG 1015
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 952 CCAACCAAATCTTGAAAGCTTGTATGTCAATCAACAGCATTGCTTTAGCTGAAATGGAAG 1011
Query 1016 TTCCACAATCATACCTTGAAGCTCTTCCAAAGAACGGGAGATCATGCCTTGGCGATTTTC 1075
|||||||||||||||||||||| |||||||||||||| ||||| || ||||| |||||||
Sbjct 1012 TTCCACAATCATACCTTGAAGCCCTTCCAAAGAACGGAAGATCTTGTCTTGGAGATTTTC 1071
Query 1076 TATATAGAAACATCACATCGGATAACTTCTCAGCAGATCACTTGCTGGAATCAATAGATC 1135
||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||
Sbjct 1072 TATATAGAAACATCACATCGGATAACTTCTCTGCGGATCACTTGCTAGAATCAATAGATC 1131
Query 1136 TTTCATCTGAGCTTGCCCTTGTAGAAATGGCGAACCGAGTAGAAGCATCAATGTACGTTT 1195
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 TTTCATCTGAGCTTGCGGTTGTAGAAATGGCGAACCGAGTAGAAGCATCAATGTACGTTT 1191
Query 1196 GGAGGCGAAGAGCTCACTCGAGGCATCTGATTTCTCTGTATCGGTCCACAAGTACAAGAT 1255
||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1192 GGAGGAGAAGAGCTCACTCGAGGCATCTGATATCTCTGTATCGATCCACAAGTACAAGAT 1251
Query 1256 GGGGGATGATAGTGAAGGAGATGATGATGCATCAAACCGATGGTGACAAAAGGGAAATAT 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 GGGGGATGATAGTGAAGGAGATGATGATGCATCAAACCGATGGTGACAAAAGGGAAATAT 1311
Query 1316 TTGCGGAAAGAGCAGAAAGCTTATTGATCCGTCTCAAGCAACGTTTCCCGGGACTTAGAC 1375
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 TTGCGGAGAGAGCAGAAAGCTTATTGATCCGTCTCAAGCAACGTTTCCCGGGACTTAGAC 1371
Query 1376 AAACAGCTTTAGACACAAGCAAGATCCAATACAACAAGGATGTAGGAAAGTCTATTCTTG 1435
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1372 AAACAGCTTTAGACACAAGCAAGATCCAATACAACAAGGATGTAGGAAAGTCTATACTTG 1431
Query 1436 AGAGCTACTCAAGGGTATTAGAGAGTTTAGCGTATAGCATTGGTGTACGCATAGAGGAAG 1495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1432 AGAGCTACTCAAGGGTATTAGAGAGTTTAGCGTATAGCATTGGTGTACGCATAGAGGAAG 1491
Query 1496 TGTTGTTCATGGATGACATCAGCAAAGATGATGGTGATG---ATGAT--T-CTTGTTCAG 1549
||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||
Sbjct 1492 TGTTGTTCATGGATGACATCAGCAAAGATGATGGTGATGGTGATGATGATTCTTGTTCAG 1551
Query 1550 ACAAGTTGAGATTGTTGTCTAAAGAAGCAGCTAATGGTGGCTCAGGCTCTCTAAGAAAGA 1609
||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||
Sbjct 1552 ACAAGTTGAGATTGTTGTCTAAAGAAGCAGCTAGTGGTGGTTCAGGCTCTCTAAGGGAGA 1611
Query 1610 AACTTTCTGCCCCATCGTTGTTCTCTGTGTCATTCTCAGGCACGTCAACTCCGTACAGAA 1669
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1612 AACTTTCTGCTCCATCGCTGTTCTCTGTGTCATTCTCAGGCACGTCAACTCCGTACAGAA 1671
Query 1670 CTCCATCTTTCTCTGCATCAACTCCAAGTTATTCACCAATGCCGTTGATAAGCCCCATCA 1729
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1672 CTCTATCTTTCTCTGCATCGACTCCAAGTTATTCACCAATGCCGTTGATAAGCCCCATCA 1731
Query 1730 ACGGAGGAAGAGGAGGAGAAAGAGCACCGTTTCTCTCTGGGAGGAACATTAGAGAACGTT 1789
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1732 ACGGAGGAAGAGGAGGAGAAAGAGCTCCGTTTCTCTCTGGGAGGAACATTAGAGAACGTT 1791
Query 1790 GTGGGTTTGGTCCAAAGAAAGCATTGGCCAATTATCTCCGGGGTTGAATGTTATGTTAAA 1849
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1792 GCGGGTTTGGTCCAAAGAAAGCATTGGCCAATTATCTCCGGGGTTGAATGTTAAGTTAAA 1851
Query 1850 GAATTTGGATTTACATTTTCTTT-TGTCTGTATCACACAACACGTTCTTTATGTTGTTGT 1908
|||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1852 AAATTTGGATTTAGATT--CTTTCTGTCTGTATCACACAACACGTTCTTTATGTTGTTGT 1909
Query 1909 TGT 1911
|||
Sbjct 1910 TGT 1912
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94628027325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5