BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg485999 Length=1911 Score E Sequences producing significant alignments: (Bits) Value AT3G55660.1 | Symbols: ATROPGEF6, ROPGEF6 | ROP (rho of plants)... 3038 0.0 > AT3G55660.1 | Symbols: ATROPGEF6, ROPGEF6 | ROP (rho of plants) guanine nucleotide exchange factor 6 | chr3:20648942-20651388 REVERSE LENGTH=1947 Length=1947 Score = 3038 bits (1645), Expect = 0.0 Identities = 1835/1923 (95%), Gaps = 27/1923 (1%) Strand=Plus/Plus Query 1 AATAACTACTATTCTTCTTCTTCTCTATGATCTCTGCTTCCTTGTTTCTGGGTATCTaaa 60 ||| |||| | |||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 5 AATTACTATTCTTCTTCTTCTTCTCTATGATCTCTGCTTCCTTTTTTCTGGGTATCTAAA 64 Query 61 aaaaaTCAATCtttttttttgtttttGTTAGCGAAAATGGAGAATAATAGCTGTATTGGG 120 |||| |||||| ||| ||| ||||||||||||||||||||| ||||||||||||| ||| Sbjct 65 AAAACTCAATC--TTTATTTCTTTTTGTTAGCGAAAATGGAGGATAATAGCTGTATCGGG 122 Query 121 TTTGAAGGG-TCGAGAAGATTTGGTGAG---AGTAAACGTATCATTGGTTTGATTGACTC 176 |||| |||| |||| ||||||||||||| ||||||||||||||||||||||||||||| Sbjct 123 TTTG-AGGGATCGAAAAGATTTGGTGAGACTAGTAAACGTATCATTGGTTTGATTGACTC 181 Query 177 AGTGACTGAGTCAACGACTGATTCAAGTCTTAGCAGCTCAAGTTGC-GGTGCTGGATCGA 235 |||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||| Sbjct 182 AGTGACTGAGTCAACGACTGATTCAAGTCTTAGCAGCTCAAGTT-CTGGTGTTGGATCGA 240 Query 236 GCTCCGGGAGGTCTTCTGTGGCGGAGAGATCTGTTTCTTCTCCGTCATCTCCTCCGACGA 295 ||||||||||||||||||| || |||||||||| | | ||||| |||||||||| Sbjct 241 GCTCCGGGAGGTCTTCTGTAGCTGAGAGATCTG-----T-T---TCATCACCTCCGACGA 291 Query 296 AATCGCAGATCCTTGGATGGCCGTTAGGGCAAGGCTCATGGAGGAAGAGTTCTGGTAAAA 355 |||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 292 AATCGCAGATTCTTGGATGGCCGTTAGGACAAGGTTCATGGAGGAAGAGTTCTGGTAAAA 351 Query 356 TGAAGAAGAAAACTCCGACAAAGATCGATGATTTCGGGTTTAAGAGAGTTGGAACAGAGA 415 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 352 TGAAGAAGAAAACTCCGACAAAGATCGATGATTTTGGGTTTAAGAGAGTTGGAACAGAGA 411 Query 416 CTTCAGAGATTGAGTTGTTGAAAGAGAGAATGGCGAAGTTGTTGCTTGGTGAAGATATGT 475 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 412 CTTCAGAGATTGAGTTGTTGAAAGAGAGAATGGCGAAGTTGTTGCTTGGTGAAGACATGT 471 Query 476 CTGGTTCTGGTGAAGGAGTTTGTCCTGCTTTGGCTATTTCAAACGCCATTACCAATCTCT 535 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct 472 CTGGTTCTGGTGAAGGAGTTTGTCCTGCTTTGGCTATTTCTAATGCCATTACCAATCTCT 531 Query 536 ATGCTGCAATATTGGGACAACAATGGAGGTTAGAGCCAATCCCTAGTGAGAAAAAATCAA 595 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || Sbjct 532 ATGCTGCAATATTGGGACAACAATGGAGGCTAGAGCCAATCCCTAGTGAGAAAAAATTAA 591 Query 596 TGTGGAGAAGAGAAATCGAAGTTCTTCTTTCTGTTAGTGATCACATTGTTGAATTGGTAC 655 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 592 TGTGGAGAAGAGAAATCGAAGTTCTTCTTTCTGTTAGTGATCACATTGTTGAATTGGTAC 651 Query 656 CTTCCTTTCAGAATTTCCCCAATGGAAACAAGATTGAGGTGATGAATTGCAGACCAAGAT 715 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 652 CTTCCTTTCAGAATTTCCCCAATGGAAACAAGATTGAGGTGATGAACTGCAGACCAAGAT 711 Query 716 CAGATCTCTTTACTTGTCTTCCTGCTCTTAGGAAGCTAGACCATATGCTTATTGAAATAT 775 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 712 CAGATCTCTTTACTTGTCTTCCTGCTCTTAGGAAGCTAGACAATATGCTTATTGAAATAT 771 Query 776 TAGATAGTTTTGGAGAAACAGAGTTCTGGTACGTTGATCAAGGAATCGTAGCTGCGGAAT 835 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 772 TAGATAGTTTTGGAGAAACAGAGTTCTGGTACGTTGATCAAGGGATTGTAGCTGCGGAAT 831 Query 836 CTGCAAGGTCTAACTCTTTCCGTGAAGACGGAGACAAATGGTGGCTTCCGCTGCCGCGTG 895 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 832 CTGCAAGGTCTAACTCTTTCCGTGAAGACGGAGACAAATGGTGGCTTCCGCTGCCGCGTG 891 Query 896 TGCCATCCGATGGACTTACTGAGCAATCTAGGAAGAAACTGGATCATACTCGCGAATTTA 955 ||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||| | Sbjct 892 TGCCATCCGATGGACTTACCGAACAAACTAGGAAGAAACTGGATCATACTCGCGAATTCA 951 Query 956 CTAACCAAATCTTGAAAGCTTGTATGTCAATCAACAGCATTGCTTTAGCTGAAATGGAGG 1015 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 952 CCAACCAAATCTTGAAAGCTTGTATGTCAATCAACAGCATTGCTTTAGCTGAAATGGAAG 1011 Query 1016 TTCCACAATCATACCTTGAAGCTCTTCCAAAGAACGGGAGATCATGCCTTGGCGATTTTC 1075 |||||||||||||||||||||| |||||||||||||| ||||| || ||||| ||||||| Sbjct 1012 TTCCACAATCATACCTTGAAGCCCTTCCAAAGAACGGAAGATCTTGTCTTGGAGATTTTC 1071 Query 1076 TATATAGAAACATCACATCGGATAACTTCTCAGCAGATCACTTGCTGGAATCAATAGATC 1135 ||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||| Sbjct 1072 TATATAGAAACATCACATCGGATAACTTCTCTGCGGATCACTTGCTAGAATCAATAGATC 1131 Query 1136 TTTCATCTGAGCTTGCCCTTGTAGAAATGGCGAACCGAGTAGAAGCATCAATGTACGTTT 1195 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1132 TTTCATCTGAGCTTGCGGTTGTAGAAATGGCGAACCGAGTAGAAGCATCAATGTACGTTT 1191 Query 1196 GGAGGCGAAGAGCTCACTCGAGGCATCTGATTTCTCTGTATCGGTCCACAAGTACAAGAT 1255 ||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 1192 GGAGGAGAAGAGCTCACTCGAGGCATCTGATATCTCTGTATCGATCCACAAGTACAAGAT 1251 Query 1256 GGGGGATGATAGTGAAGGAGATGATGATGCATCAAACCGATGGTGACAAAAGGGAAATAT 1315 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1252 GGGGGATGATAGTGAAGGAGATGATGATGCATCAAACCGATGGTGACAAAAGGGAAATAT 1311 Query 1316 TTGCGGAAAGAGCAGAAAGCTTATTGATCCGTCTCAAGCAACGTTTCCCGGGACTTAGAC 1375 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1312 TTGCGGAGAGAGCAGAAAGCTTATTGATCCGTCTCAAGCAACGTTTCCCGGGACTTAGAC 1371 Query 1376 AAACAGCTTTAGACACAAGCAAGATCCAATACAACAAGGATGTAGGAAAGTCTATTCTTG 1435 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1372 AAACAGCTTTAGACACAAGCAAGATCCAATACAACAAGGATGTAGGAAAGTCTATACTTG 1431 Query 1436 AGAGCTACTCAAGGGTATTAGAGAGTTTAGCGTATAGCATTGGTGTACGCATAGAGGAAG 1495 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1432 AGAGCTACTCAAGGGTATTAGAGAGTTTAGCGTATAGCATTGGTGTACGCATAGAGGAAG 1491 Query 1496 TGTTGTTCATGGATGACATCAGCAAAGATGATGGTGATG---ATGAT--T-CTTGTTCAG 1549 ||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||| Sbjct 1492 TGTTGTTCATGGATGACATCAGCAAAGATGATGGTGATGGTGATGATGATTCTTGTTCAG 1551 Query 1550 ACAAGTTGAGATTGTTGTCTAAAGAAGCAGCTAATGGTGGCTCAGGCTCTCTAAGAAAGA 1609 ||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||| Sbjct 1552 ACAAGTTGAGATTGTTGTCTAAAGAAGCAGCTAGTGGTGGTTCAGGCTCTCTAAGGGAGA 1611 Query 1610 AACTTTCTGCCCCATCGTTGTTCTCTGTGTCATTCTCAGGCACGTCAACTCCGTACAGAA 1669 |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1612 AACTTTCTGCTCCATCGCTGTTCTCTGTGTCATTCTCAGGCACGTCAACTCCGTACAGAA 1671 Query 1670 CTCCATCTTTCTCTGCATCAACTCCAAGTTATTCACCAATGCCGTTGATAAGCCCCATCA 1729 ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1672 CTCTATCTTTCTCTGCATCGACTCCAAGTTATTCACCAATGCCGTTGATAAGCCCCATCA 1731 Query 1730 ACGGAGGAAGAGGAGGAGAAAGAGCACCGTTTCTCTCTGGGAGGAACATTAGAGAACGTT 1789 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1732 ACGGAGGAAGAGGAGGAGAAAGAGCTCCGTTTCTCTCTGGGAGGAACATTAGAGAACGTT 1791 Query 1790 GTGGGTTTGGTCCAAAGAAAGCATTGGCCAATTATCTCCGGGGTTGAATGTTATGTTAAA 1849 | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1792 GCGGGTTTGGTCCAAAGAAAGCATTGGCCAATTATCTCCGGGGTTGAATGTTAAGTTAAA 1851 Query 1850 GAATTTGGATTTACATTTTCTTT-TGTCTGTATCACACAACACGTTCTTTATGTTGTTGT 1908 |||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||| Sbjct 1852 AAATTTGGATTTAGATT--CTTTCTGTCTGTATCACACAACACGTTCTTTATGTTGTTGT 1909 Query 1909 TGT 1911 ||| Sbjct 1910 TGT 1912 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 94628027325 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5