BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486001
Length=595
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55677.1 | Symbols: | Plant self-incompatibility protein S1... 665 0.0
AT3G55672.1 | Symbols: | Plant self-incompatibility protein S1... 455 2e-127
> AT3G55677.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr3:20663983-20664576 FORWARD LENGTH=594
Length=594
Score = 665 bits (360), Expect = 0.0
Identities = 525/603 (87%), Gaps = 18/603 (3%)
Strand=Plus/Plus
Query 1 AATTTACATAACCATGGCTTCCATTACTAATTCTCATTTTATATTGTTGTTTCTTATCTT 60
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 AATTTACAGAACCATGGCTTCCATTACTAATTCTCATTATATATTGTTGTTTCTTATCTT 60
Query 61 TTCTACTTTTATTGTTTTTACGTTAGCATTAGATTTATCAGATGTTGCAGCAGAAGCACC 120
|| |||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 61 TTTTACTTTTATTGTATTTACTTTAGCATTAGATTTATCAAATGTTGCAGCAGAAGCACC 120
Query 121 GGATGGCTTGTTACCTCTATCCAAAAAACACGTTGTAATTCGCAACACTGTAACA-AACG 179
|| |||||||||||||| |||||||| |||||| |||||||||||||||| || ||||
Sbjct 121 AGACGGCTTGTTACCTCTGTCCAAAAAGCACGTTTTAATTCGCAACACTGT-TCAGAACG 179
Query 180 GAGAAGTTTTGAATATACATTGCAAATCCAGTGAGGATGATTTGGGGCATATTCGTCTTA 239
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 180 GACAAGTTTTGAATATACATTGCAAATCCAGTGAGGATGATTTGGGGCATATCCGTCTTA 239
Query 240 AACATGGGCATACTTGGGGTTTCAGATTTCGTGTTAACTTTTCATTATCTACGT-ATTTT 298
|||||||| ||||||||||||||||||||||||||||| | || || ||||| ||||
Sbjct 240 AACATGGGGATACTTGGGGTTTCAGATTTCGTGTTAACATGGCACTAACTACGAGATTT- 298
Query 299 CGTTGTCATTTTTGGTGGAATTCA-GTTCCAGGCGGTCCTAA-CTATTATAGTTATTGGT 356
|||||||| ||||||||| || || | | | | || || | |||||||||| ||||
Sbjct 299 CGTTGTCACTTTTGGTGGTATGCACG--CGAC-CA-TC-TAGGCCATTATAGTTACTGGT 353
Query 357 TTGATATATTTACTGTATACAGAGACGATAACCCATTAGGAAAGTATCCAGTTTGCGAAG 416
||||||||||||||||||||||||||||||| ||||| ||||| |||||| ||||||| |
Sbjct 354 TTGATATATTTACTGTATACAGAGACGATAATCCATTTGGAAAATATCCAATTTGCGATG 413
Query 417 AATGCATTTGGGAGATGTACGAATTACGTCAAAACTATATTTGTCGTATAAATCGTGATA 476
||||| ||||| | |||||||||||| || |||||| ||||||||||||||||||||||
Sbjct 414 AATGCGTTTGGAATATGTACGAATTAAGTGAAAACTTTATTTGTCGTATAAATCGTGATC 473
Query 477 AATCAGGGTGGTGTTTCCGCATGGACATTGAACCTTAA-AA-AA--CACATTATTGTTCA 532
|||| || |||||||| ||||||| ||| |||| || || |||||||| ||||
Sbjct 474 AATCTGGATGGTGTTTTAAAATGGACAGAGAAAATTAAGAAGAAAACACATTATCGTTCG 533
Query 533 ATATATCTTATCTAATAAATACAATCATTTAAATTGATTGAATAAAATAATATCATTGAG 592
|| ||||||||| ||| |||||||||| |||||||||||||||||||| ||| ||||
Sbjct 534 ATGTATCTTATCC--TAA-TACAATCATTAAAATTGATTGAATAAAATAAAATCGTTGAT 590
Query 593 ACT 595
|||
Sbjct 591 ACT 593
> AT3G55672.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr3:20660960-20661460 FORWARD LENGTH=501
Length=501
Score = 455 bits (246), Expect = 2e-127
Identities = 429/514 (83%), Gaps = 26/514 (5%)
Strand=Plus/Plus
Query 14 ATGGCTTCCATTACTAATTCTCATTTTATATTGTTGTTTCTTATCTTTTCTACTTTTATT 73
|||||||||||||||||||||||| ||||||| |||||| | |||| |||||||||||||
Sbjct 1 ATGGCTTCCATTACTAATTCTCATCTTATATTATTGTTTATAATCTCTTCTACTTTTATT 60
Query 74 GTTTTTACGTTAGCATTAGATTTATCAGATGTTGCAGCAGAAGCACCGGATGGCTTGTTA 133
||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||| |||
Sbjct 61 GTTTTTACGTTAGCATTAGATTTTTCAGATGTTCCAGCAGAAGCACCAGATGGCTTTTTA 120
Query 134 CCTCTATCCAAAAAACACGTTGTAATTCGCAACACTGTAACA-AACGGAGAAGTTTTGAA 192
||| || ||||||| || |||||||||||||| ||||| | | || ||||||| |||||
Sbjct 121 CCTTTAGCCAAAAAGCATGTTGTAATTCGCAATACTGT-AGAGAATGGAGAAGGGTTGAA 179
Query 193 TATACATTGCAAATCCAGTGAGGATGATTTGGGGCATATTCGTCTTAAACATGGGCATAC 252
||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||
Sbjct 180 TATACATTGCAAATCCAGTGAGGATGATTTGGGACATATCCATCTTAAACATGGGCATAC 239
Query 253 TTGGGGTTTCAGATTTCGTGTTAACTTTTCATTATCTACGTATTTTCGTTGTCATTTTTG 312
||||| |||||| |||| ||||||| | ||| |||||| | |||||||| ||||||||
Sbjct 240 TTGGGATTTCAGGTTTCATGTTAACATGTCAAAATCTACAAAATTTCGTTGCCATTTTTG 299
Query 313 GTGGAATTCAGTTCCAGGCGGTCCTAACTATTAT-AGTTATTGGTTTGATATATTTACTG 371
|||| || | | ||||||| | | | || | | ||| ||||||||||||||||
Sbjct 300 GTGGTAT---G--C-AGGCGGTAATGATTTTT-TCAATTACTGGTTTGATATATTTAAAA 352
Query 372 TATAC-AGAGACGATAACCCATTAGGAAAGTATCCAGTTTGCGAAGAATGCATTTGGGAG 430
||| | ||||| || || |||| |||||| ||||| |||||| |||||||||||||||||
Sbjct 353 TAT-CTAGAGATGACAAACCATCAGGAAAATATCCTGTTTGCAAAGAATGCATTTGGGAG 411
Query 431 ATGTAC-GAATTACG-TCAA-AA--CTATATTTGTCGTATAAATCGTGATAAATCAGGG- 484
| || || | ||| | || ||||||||||||||||||||||||||||||||
Sbjct 412 TTAAACCGA-T-ACGGTTTTGAAGGCTATATTTGTCGTATAAATCGTGATAAATCAGATC 469
Query 485 T--GGTGTTTC-CGCATGGAC-ATTGAACCTTAA 514
| |||||||| || |||||| || ||||||||
Sbjct 470 TTTGGTGTTTCTCG-ATGGACGATA-AACCTTAA 501
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28633463790
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5