BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486006
Length=1488
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55720.1 | Symbols: | Protein of unknown function (DUF620) ... 2311 0.0
> AT3G55720.1 | Symbols: | Protein of unknown function (DUF620)
| chr3:20679820-20681447 FORWARD LENGTH=1499
Length=1499
Score = 2311 bits (1251), Expect = 0.0
Identities = 1412/1491 (95%), Gaps = 6/1491 (0%)
Strand=Plus/Plus
Query 1 GAAAAAGTTTCGATTACAC-ATCttttttttGGCAATCACTTTTCTCTTCTAAGATTTTG 59
||||||||||||||||| | ||| ||||| |||||| || |||||||||||||||||||
Sbjct 1 GAAAAAGTTTCGATTAC-CTATC-TTTTTCCGGCAATAACATTTCTCTTCTAAGATTTTG 58
Query 60 CTAAAAGAGTTAAAAATGAGAACACTTTGTCCTAATTTCGATAGAGAAGACGGTCTAGAG 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 59 CTAAAAGAGTTAAAAATGAGAACACTTTGTCCTAATTTCGATAGAGAAGACGGTTTAGAG 118
Query 120 ACCGTGTTGGAAGTTCCGATGCCGGAGGAGTTGTTTTGTTCCGACAACAACAAGAGCGGC 179
|| || ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 119 ACGGTATTGGAAGTTCCGATGCCGGAGGAGTTGTTCTGTTCGGACAACAACAAGAGCGGC 178
Query 180 ACTTGGCGTAGCGTCAAATCTAGTTTGCTCCGGTCACCGCCGGATAACAGTAGTAGCCTC 239
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 179 GCTTGGCGTAGCGTCAAATCTAGTTTGCTCCGGTCACCGCCGGATAACAGTAGCAGCCTT 238
Query 240 GCCACACTTTTTGGTGGACGTGACGCTCAGATTCATATGCTTCTTGGAATCGTTGGAGCT 299
|||||||| || || || |||||| |||||||||| ||||||||||||||||||||||||
Sbjct 239 GCCACACTATTCGGCGGTCGTGACTCTCAGATTCAGATGCTTCTTGGAATCGTTGGAGCT 298
Query 300 CCGTCGATCCCTCTTCCTGTTGCTTCCGATCACGACGAGATTGATCATCCCATCTCCAAT 359
|||||||| ||||| ||| || |||||||||| | | |||||||||||||||||||||||
Sbjct 299 CCGTCGATACCTCTCCCTATTTCTTCCGATCAGGCCAAGATTGATCATCCCATCTCCAAT 358
Query 360 CTCATCAAAAACCAATCTATTGAATCAGCCATGGCGAAGTACATAGTAAAGCAATACACC 419
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CTCATTAAAAACCAATCTATTGAATCAGCCATGGCGAAGTACATAGTAAAGCAATACACT 418
Query 420 GCAGCAGCAGGAGGAGAGATGGCTTTGGCTGGGGTGGAGAGCATGTACGCGATCGGAAAG 479
||||| || ||||||||||||||||||| || |||||||||||||||||||| ||||||
Sbjct 419 GCAGCCGCTGGAGGAGAGATGGCTTTGGATGCCGTGGAGAGCATGTACGCGATGGGAAAG 478
Query 480 GTGAAGATGGGAGTGACTGAGTTTTGTGCAGCGAAAACCCTAAATGGGAAGAGGAAGAAT 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GTGAAGATGGGAGTGACTGAGTTTTGTGCAGCGAAAACCCTAAATGGGAAGAGGAAGAAG 538
Query 540 AAGATGGTGAGGATAAGAAACGTCAATAACAACAACGGAAACGGAGGAGAGATGGGAGGC 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 AAGATGGTGAGGATAAGAAACGTCAATAACAACAACGGAAACGGAGGAGAGATGGGAGGT 598
Query 600 TTTGTGTTATGGAAGAAAGGTTTGAGTCAATGGAGTTTAGAGCTTGTGGTTTCGGGTTGT 659
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 599 TTTGTGTTATGGAAGAAAGGTTCGAGTCAATGGAGTTTAGAGCTTGTGGTTTCGGGTTGT 658
Query 660 AAAGTTAGTGCTGGTTGTGATGGTAACGTGGCTTGGAGACAAAGCCCTTGGCTCGCACAT 719
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 659 AAAGTTAGTGCTGGTTGTGATGGTAACGTGGATTGGAGACAAAGCCCTTGGCTCGCACAT 718
Query 720 TCTCATGCTTCTAATGAACCTTCTGGACCTCTCAGAAGGTTTCTCCAAGGGCTTGATCCT 779
|||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct 719 TCTCATGCTTCTAATGAACCTTCTGGACCTCTTAGAAGGTTCCTTCAAGGGCTTGATCCT 778
Query 780 AAAACCACCGCAAATTTGTTCGCTGGATCGGTTTGCGTGGGTGAAAAGGCGGTAAACGAC 839
|||||||| |||||||| || || ||||| ||||||||||||||||||||||| ||| ||
Sbjct 779 AAAACCACAGCAAATTTATTTGCGGGATCCGTTTGCGTGGGTGAAAAGGCGGTTAACAAC 838
Query 840 GAAGAATGCTTTGTGCTTAAGCTCGAAACGCAGCCATCGGGACTTAAATCTAGAAGCAAG 899
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 839 GAAGAATGCTTTGTGCTTAAGCTCGAAACGCAGCCTTCGGGACTTAAATCTAGAAGCAAG 898
Query 900 AGCGGTATGGAAACGGTGAAGCATACCGTGTGGGGATGTTTTAGTCAAAGAACAGGACTT 959
||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 899 AGCGGTATGGAGACAGTGAAGCATACCGTGTGGGGATGTTTTGGTCAAAGAACAGGACTT 958
Query 960 TTGGTTCAATTAGAGGATACTTATCTAGTACGGATCAAGACCTGTCTGGAAGAAGAAGAT 1019
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 959 TTGGTTCAATTAGAGGATACTTATCTAGTACGGATCAAGACCGGTCTGGAAGATGAAGAT 1018
Query 1020 ATGGTCTTGTGGGAAACGTCGTCTGAGACACTGATCCAAGATTATAAGAGCGTTGATGGG 1079
|||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1019 ATGGTCTTGTGGGAAACGACGTCTGAGACATTGATCCAAGATTATAAGAGCATTGATGGG 1078
Query 1080 ATACAGATTGCTCACAGAGGAAAAACACGTGTCTCATTGTTGAGGCTTGATGAGAGCTTA 1139
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 ATTCAGATCGCTCACAGAGGAAAAACACGTGTCTCATTGTTGAGGCTTGATGAGAGCTTA 1138
Query 1140 GAGAGCCATTCAAAGACTACAATGGAAGAGAGTTGGGAGATTGAAGAAGTGGGTTTTAAT 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 GAGAGCCATTCAAAGACTACAATGGAAGAGAGTTGGGAGATTGAAGAAGTGGGTTTTAAT 1198
Query 1200 GTGAAGGGTTTGTCTTCGGATTTCTTCTTGCCTCCAGGTGACTTGCATACCAAGGAAGAA 1259
||||||||||||||||| ||||||||||||||||| ||||||||| || |||||||||
Sbjct 1199 GTGAAGGGTTTGTCTTCAGATTTCTTCTTGCCTCCTGGTGACTTGTGTATTAAGGAAGAA 1258
Query 1260 GAAGAAAGTGGATTTAGTTTCGGAGATTATAGTAGTCCTATGCTGCTTCCATTGAAGGTT 1319
||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1259 GAAGAAACCGGGTTTAGTTTCGGAGATTATACTAGTCCTATGCTGCTTCCATTGAAGGTT 1318
Query 1320 AGTAC-AGCTTCATGGAAACTCAAGTCCTCTAAAGTCACAGCTATTGAAGATTTTGGTGA 1378
||||| | ||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 1319 AGTACCA-CTTCATGGAAAATCAAGTCCTCAAAAGTCACAGCTATTGAAGATTTTGGTGA 1377
Query 1379 ATTTGAGGGATGAGAAA-TGAAGACGTTTCAAGATATTTTTATTGTAAATTGATCTTCAT 1437
||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 ATTTGAGGGATAAAAAAGTGAAGACGTTTCAAGATATTTTTATTGTAAATTGATCTTCAT 1437
Query 1438 TTTATATATATATGGAAAATTATGGAGAAAAGTGCTTGTAAATAACATTAT 1488
||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 TTTGTATATATATGGAAAATTATGGAGAAAAGTGCTTGTAAATAACATTAT 1488
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73393196790
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5