BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486007
Length=1428
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55730.1 | Symbols: MYB109, AtMYB109 | myb domain protein 10... 2060 0.0
> AT3G55730.1 | Symbols: MYB109, AtMYB109 | myb domain protein
109 | chr3:20681904-20684053 REVERSE LENGTH=1500
Length=1500
Score = 2060 bits (1115), Expect = 0.0
Identities = 1370/1483 (92%), Gaps = 57/1483 (4%)
Strand=Plus/Plus
Query 1 TAGGAAAGCTGGTACAAACCAAATTTCA-----ttt-ttttAATTAATTTT-GCC-Caaa 52
|||||||||||||||||||||||||||| ||| |||||||||||||| ||| |||
Sbjct 1 TAGGAAAGCTGGTACAAACCAAATTTCATTTTTTTTCTTTTAATTAATTTTGGCCAAAAA 60
Query 53 -aaaaaaaaaTCG-AAC-TTTTTTGTGTTAATGGAAGGAGAAACTCATCGATCGGAGCCG 109
|||||||||||| ||| |||||||||| |||||||||||||||||||| ||||||||||
Sbjct 61 GAAAAAAAAATCGAAACTTTTTTTGTGTAAATGGAAGGAGAAACTCATCAATCGGAGCCG 120
Query 110 TTACCTTTAGCATCTGCAGATTCCGATGAAGGAATCAGTGCTTCGATTGAGGCGGAGCTT 169
|||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 121 TTACCTTTAGCATCTGGAGATTCCGATGAAGGGATCAGTGCTGCGATTGAGGCGGAGCTT 180
Query 170 GCTGAGTTAGCTGCTGGAGATTCAAGCGGCGGTGGTGG-T-----GGC------GGAGGG 217
|||||||||||||||||||||||||||||||||||||| | ||| ||||||
Sbjct 181 GCTGAGTTAGCTGCTGGAGATTCAAGCGGCGGTGGTGGTTGCGGCGGCGGAGGAGGAGGG 240
Query 218 ATTAAGAGTAAAGTTAAAGGACCTTGGTCTACGGAGGAAGACGCGGTT-TTAACGAAGCT 276
|||| ||||||||| ||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 241 ATTAGGAGTAAAGTCAAAGGACCTTGGTCTACGGAGGAAGACGCGGTTCTT-ACGAAGCT 299
Query 277 TGTGAGGAAATTAGGAGCGAGGAATTGGAGTTTGATCGCTCGTGGAATCCCTGGTCGTTC 336
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TGTGAGGAAACTAGGACCGAGGAATTGGAGTTTGATCGCTCGTGGAATCCCTGGTCGTTC 359
Query 337 TGGCAAATCTTGTCGATTGCGTTGGTGTAATCAGCTTGACCCTTGTCTCAAGCGTAAACC 396
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TGGTAAATCTTGTCGATTGCGTTGGTGTAATCAGCTTGACCCTTGTCTCAAGCGTAAACC 419
Query 397 TTTCTCTGATGAGGAAGATCGTATGATAATTTCTGCTCACGCGGTTCACGGAAACAAATG 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TTTCTCTGATGAGGAAGATCGTATGATAATTTCTGCTCACGCGGTTCACGGAAACAAATG 479
Query 457 GGCAGTGATTGCGAAAATGTTAACTGGAAGAACTGATAACGCTATTAAGAACCATTGGAA 516
|||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 480 GGCAGTGATTGCGAAACTGTTAACTGGAAGAACAGATAACGCTATCAAGAACCATTGGAA 539
Query 517 CTCAACGCTTAGACGTAAATACGCAGATCTATGGAATAATGGTCAATGGATGGCTAATTC 576
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CTCAACTCTTAGACGTAAATACGCAGATCTATGGAATAATGGTCAATGGATGGCTAATTC 599
Query 577 AGTTACTACCGCTTACGTCAAGAACGAAAATGTCGATGAAGCATCTAA---TCCATCATC 633
|||||||||||||| |||||| |||||||||||||||||| || |||| |||||| ||
Sbjct 600 AGTTACTACCGCTTCCGTCAAAAACGAAAATGTCGATGAAACAACTAATCCTCCATCCTC 659
Query 634 AAAACAACAGTTGCCTCAAGGAGATATCAA-T--TCACCGCCAAAGCCTCCACAAGTGAG 690
|||||||||||||||||||||||||||||| | || |||||||||||||||||||||||
Sbjct 660 AAAACAACAGTTGCCTCAAGGAGATATCAATTCCTCCCCGCCAAAGCCTCCACAAGTGAG 719
Query 691 TGATGTTGTAATGGAAGAGGCAGC---T-AA--T---GAACCT---------CAAGAACA 732
|||||||||||||||||||||||| | || | |||||| ||||||||
Sbjct 720 TGATGTTGTAATGGAAGAGGCAGCTAATGAACCTCAAGAACCTCAAGAACAACAAGAACA 779
Query 733 AGCTCCACCAGTAGAGAGTAACGTTCCAATAGACAATAACGTGTTTCGCCCAGTGGCTCG 792
||||||||| |||| |||||||||||||| ||| ||||||||||||||||| ||||||||
Sbjct 780 AGCTCCACCGGTAGTGAGTAACGTTCCAACAGAAAATAACGTGTTTCGCCCCGTGGCTCG 839
Query 793 CCTTGGCGCATTCAGTGTCTATAACCCAACCAGCCAGAAAAATGGATACAGAGACCACAA 852
| |||| ||||||||| |||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 840 CGTTGGTGCATTCAGTATCTATAACCCAACCAGCCAGAAAAATGGTTACAGAGACTACAA 899
Query 853 TATAGTTCCATGCGAGGGACCGTTAATTCAAGCAGCTAAACCAGATTCACTGGCCGGTAA 912
|||||||||||| ||||||||||| ||||||||||||||||| |||||| |||| |||||
Sbjct 900 TATAGTTCCATGTGAGGGACCGTTGATTCAAGCAGCTAAACCCGATTCATTGGCTGGTAA 959
Query 913 ATTTCTACAATCTCTTTGCGATGAACCTCAGATCCCGTCAAAATGTGGTCACGGCTGCTC 972
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 960 ATTTCTACAATCTCTTTGTGATGAACCTCAAATCCCGTCAAAATGTGGTCACGGCTGCTC 1019
Query 973 TACTCATCCAGCTGAAACTAAGTTCCCAAGTAACTCGGTGTTGGGACCAGAGTTTGTGGA 1032
||||| ||||||||||||||||||| || ||||||||||||||||||| |||||||||||
Sbjct 1020 TACTCTTCCAGCTGAAACTAAGTTCTCACGTAACTCGGTGTTGGGACCTGAGTTTGTGGA 1079
Query 1033 TTATGAAGAGCCTTCTGCAGTTTTCAACCAGGAACTGATATCTATAGCAACCGATTTGAA 1092
|||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1080 TTATGAAGAGCCTTCTGCGGTTTTCAACCAAGAACTAATATCTATAGCAACCGATTTGAA 1139
Query 1093 CAACATTGCATGGATAAAGAGTGGCCTTGACAATGCCGTTATCAGAGAAGCAGAACAGAG 1152
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 1140 CAACATTGCATGGATAAAGAGTGGCCTTGACAATGCTGTTGTCAGAGAAGCAGAACAGAG 1199
Query 1153 TTTGAAGATCGATAATTTCAATTATAATGATCCTCGAATCAAGTTTACCGGAATGATGCC 1212
||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 1200 TTTGAAGATGGATAATTACAATTATAATGATCCTCGAATCAAGTTTACTGGAATGATGCC 1259
Query 1213 TAGACAAGATTTCTTCTGTGCAAGAAGCTGAAACTCAAAAGTAGGT-TTGAGATTCATCT 1271
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1260 TAGACAAGATTTCTTCTGTGCAAGAAGCTGAAACTCAAAAGTAGGGCTTGAGATTCATCA 1319
Query 1272 TCCCCCTTTTTT-CTT--GATTCTTTGCGCTTTGACGCATATAGATGATGATCTAAGTAC 1328
|||| |||||| ||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1320 ACCCCTTTTTTTTCTTTTGATTCTTTGCGCTTTGACGCATATAGATGATGAA-TAAGTAC 1378
Query 1329 CAGACTGGTACTTATGGATGTTGTT-T--CTGACATTTTGATTCGGATTTGGTGGAAGAA 1385
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1379 CAGACTGGTACTTATGGATGTTGTTGTTTCTGACATTTTGATTCGGATTTGGTGGAAGAA 1438
Query 1386 AGATAGAAAACAGAGTCTGTATCGTGTCTCTTATTATATAAAA 1428
|||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1439 AGATAGAAAACAGAGTATGTATCGTGTCTCTTATTATATAAAA 1481
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70381164090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5