BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486008
Length=1622
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55740.1 | Symbols: PROT2, ATPROT2 | proline transporter 2 |... 2490 0.0
AT2G39890.1 | Symbols: PROT1, ATPROT1 | proline transporter 1 |... 1186 0.0
AT2G36590.1 | Symbols: ProT3, ATPROT3 | proline transporter 3 |... 1086 0.0
AT1G41890.1 | Symbols: | pseudogene, proline transporter 2, si... 632 3e-180
AT1G42090.1 | Symbols: | pseudogene, similar to betaine/prolin... 383 3e-105
> AT3G55740.1 | Symbols: PROT2, ATPROT2 | proline transporter 2
| chr3:20695499-20698265 FORWARD LENGTH=1715
Length=1715
Score = 2490 bits (1348), Expect = 0.0
Identities = 1558/1653 (94%), Gaps = 40/1653 (2%)
Strand=Plus/Plus
Query 1 TGCAAATAATTCATACACACACACAGAGACGTATCCATCTTTCTGACCCATCAATTAAA- 59
|||||||||||||| ||| || ||||||||| ||||| |||||||||||||||||
Sbjct 1 TGCAAATAATTCAT----ACATAC--AGACGTATCGATCTTGCTGACCCATCAATTAAAT 54
Query 60 TTTGACCCAAAA-G----A-T--C--------AAACAGAATTCATTTTCATC--AATTCC 101
|||||||||||| | | | | |||||||||||| ||||||| ||||||
Sbjct 55 TTTGACCCAAAAGGTCAAATTCACTATAAGAAAAACAGAATTCA-TTTCATCAAAATTCC 113
Query 102 ATTTCACACTTTTCCTGTCTGTTACGA---TT-CTTGA-TTCTTTCT-AACAAAGCAAAA 155
||||||||||||| ||||||||||||| || ||||| |||||||| ||||||||||||
Sbjct 114 ATTTCACACTTTTTCTGTCTGTTACGATTCTTGCTTGATTTCTTTCTAAACAAAGCAAAA 173
Query 156 GTTGTCTTTTTGAAG-TGTGAGCAACTAATTCTC-GAAACTGAGGAAGAGAAA-CTA-AA 211
|||||||||||| || |||||||||||||||||| |||| ||||||||||||| | | ||
Sbjct 174 GTTGTCTTTTTGGAGTTGTGAGCAACTAATTCTCTGAAATTGAGGAAGAGAAAGCGAGAA 233
Query 212 GG-GTTTTTGGAGTCAGTGACAGAAGAAGAATTTAACAGATTCTTGTCGGAAACATGGAT 270
|| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 GGTTTTTTTGGAGTCAGAGACAGAAGAAGAATTTAACAGATTCTTGTCGGAAACATGGAT 293
Query 271 ACGAGTGAAGCTAGGAACCGTAAAGTTGTTGAAGTGGAA-AAGTTCGATCTCGAAGTCCC 329
||||||||||| ||||||||||||||||||| ||| ||| || |||||||||||||||||
Sbjct 294 ACGAGTGAAGCAAGGAACCGTAAAGTTGTTGCAGTTGAACAA-TTCGATCTCGAAGTCCC 352
Query 330 TGAGACTGCTCATCAGATTAGCAGCGATTCATGGTTTCAGGTAGCATTTGTTCTAACAAC 389
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 353 TGAGACTGCTCATCAGATTAGCAGCGATTCATGGTTTCAGGTAGCTTTTGTTCTAACGAC 412
Query 390 CGGTATAAACAGTGCCTATGTGTTGGGATATTCCGGGACAGTCATGGTTCCTTTGGGTTG 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 CGGTATAAACAGTGCCTATGTGTTGGGATATTCCGGGACAGTCATGGTTCCTTTGGGTTG 472
Query 450 GATAGGTGGTGTGGTTGGTCTCATTCTTGCTACCGCGATCTCCCTTTACGCAAACACTCT 509
||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 473 GATTGGTGGTGTGGTTGGTCTCATTCTTGCTACCGCAATCTCTCTTTACGCAAACACTCT 532
Query 510 TATCGCCAAGCTTCATGAGTTTGGTGGCAAAAGACACATTCGTTATAGAGATCTGGCAGG 569
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 533 TATCGCCAAACTTCATGAGTTTGGTGGCAAAAGACACATTCGTTATAGAGATCTTGCAGG 592
Query 570 CTTCATCTATGGTAAAAAGATGTATCGTGTTACATGGGGATTACAATATGTCAATCTTTT 629
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 593 CTTCATCTATGGTAAAAAGATGTATCGTGTTACATGGGGATTGCAATATGTCAATCTTTT 652
Query 630 CATGATTAATTGTGGCTTCATCATACTTGCTGGTTCCGCCTTAAAGGCTGTTTATGTTCT 689
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 653 CATGATTAATTGTGGCTTCATCATACTTGCTGGTTCAGCCTTAAAGGCTGTTTATGTACT 712
Query 690 TTTTAGAGATGACAGTCTCATGAAACTGCCTCACTTTATCGCCATCGCGGGTGTTGTATG 749
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 713 TTTTAGAGATGATAGTCTCATGAAACTGCCTCACTTCATCGCCATCGCGGGTGTTGTATG 772
Query 750 TGCAATTTTCGCAATCGGTATTCCTCATTTATCAGCTCTTGGAATCTGGCTAGGAGTTTC 809
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 CGCGATTTTCGCAATCGGTATTCCTCATTTATCAGCTCTTGGAATCTGGCTAGGAGTTTC 832
Query 810 AACAATCCTCAGCATAATCTACATTGTTGTTGCAATAGTTCTATCAGCTAAAGATGGAGT 869
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 833 AACAATCCTCAGCATAATCTACATTATTGTTGCAATAGTTCTATCAGCTAAAGATGGAGT 892
Query 870 AAACAAGCCTGAAAGAGATTACAACATACAAGGATCATCAATAAACAAACTCTTTACCAT 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 AAACAAGCCTGAAAGAGATTACAACATACAAGGATCATCAATAAACAAACTCTTTACCAT 952
Query 930 AACAGGAGCAGCTGCAAATCTGGTTTTCGCATTCAACACGGGAATGCTCCCGGAAATACA 989
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 953 AACAGGAGCAGCTGCAAATCTAGTTTTCGCATTCAACACGGGAATGCTCCCGGAAATACA 1012
Query 990 GGCAACAGTGAAGCAACCGGTGGTTAAAAACATGATGAAGGCTCTGTATTTTCAATTCAC 1049
||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1013 GGCCACGGTGAAGCAACCGGTCGTTAAAAACATGATGAAGGCTCTGTATTTTCAATTCAC 1072
Query 1050 TGTTGGTGTTTTACCGATGTACGCGGTTACATTCATCGGTTATTGGGCTTACGGGTCCTC 1109
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1073 TGTTGGTGTTTTACCTATGTACGCGGTTACATTCATCGGATATTGGGCTTACGGGTCCTC 1132
Query 1110 GACATCGACTTATCTGTTAAACAGCGTCAGTGGACCTCTCTGGGTCAAAGCCCTCGCTAA 1169
||||||||||||||| ||||||||||||||||||||| | ||||||||||| ||||||||
Sbjct 1133 GACATCGACTTATCTCTTAAACAGCGTCAGTGGACCTGTTTGGGTCAAAGCACTCGCTAA 1192
Query 1170 CATTTCAGCTTTTCTCCAATCTGTTATCTCTTTACATATTTTTGCAAGTCCGACTTATGA 1229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 CATTTCAGCTTTTCTCCAATCTGTTATCTCTTTACATATTTTTGCAAGTCCGACTTATGA 1252
Query 1230 GTATATGGACACAAAGTATGGAGTCAAAGGAAGTCCATTAGCATTGAAGAATCTGTTGTT 1289
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 1253 GTATATGGACACAAAGTATGGAGTCAAAGGAAGTCCATTGGCAATGAAGAATCTGTTGTT 1312
Query 1290 TAGAACAGTAGCACGAGGAAGCTACATCGCGGTAAGCACACTTCTCTCTGCGCTTTTGCC 1349
||||||||||||| ||||||||||||| ||||| ||||| ||||||||||||||||| ||
Sbjct 1313 TAGAACAGTAGCAAGAGGAAGCTACATTGCGGTGAGCACTCTTCTCTCTGCGCTTTTACC 1372
Query 1350 GTTTCTCGGAGATTTCATGAGCCTCACCGGAGCTATAAGCACGTTCCCTCTCACATTCAT 1409
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1373 GTTTCTCGGAGATTTCATGAGCCTTACCGGAGCGATAAGCACGTTCCCTCTCACATTCAT 1432
Query 1410 ATTAGCGAATCACATGTATCTTGTTGCTATGAACGATAAGCTTAGTCTTGTGCAAAAGCT 1469
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 1433 ATTAGCGAATCACATGTATCTTGTTGCTATGAATGATGAGCTTAGTCTTGTGCAAAAGCT 1492
Query 1470 ATGGCATTGGCTTAATGTTTGCGTCTTTGGATTAATGTCTCTTGCTGCTGCTATTGCTGC 1529
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1493 ATGGCATTGGCTCAATGTTTGCTTCTTTGGATTAATGTCTCTTGCTGCTGCTATTGCTGC 1552
Query 1530 TGTTAGACTCATCTCTGTTGATTCCAAGAACTTCCATGTTTTTGCTGATGTTTGATTTAA 1589
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1553 TGTTAGACTCATCTCTGTTGACTCCAAGAACTTCCATGTTTTTGCTGATGTTTGATT-AA 1611
Query 1590 AACGTATTCGACATTGTTAACGTTGTAATCTTT 1622
|| || ||||||||| |||||| ||||||||||
Sbjct 1612 AATGTCTTCGACATTTTTAACGATGTAATCTTT 1644
> AT2G39890.1 | Symbols: PROT1, ATPROT1 | proline transporter 1
| chr2:16655679-16658331 FORWARD LENGTH=1801
Length=1801
Score = 1186 bits (642), Expect = 0.0
Identities = 1076/1284 (84%), Gaps = 35/1284 (3%)
Strand=Plus/Plus
Query 312 GTTCGATCTCGAAGTCCCTGAGACTGCTCATCAGATTAGCAGCGATTCATGGTTTCAGGT 371
||| ||| ||||| ||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 401 GTT-GATATCGAAATCCCTGACACTGCTCATCAAATTAGCAGCGATTCATGGTTTCAGGT 459
Query 372 AGCATTTGTTCTAACAACCGGTATAAACAGTGCCTATGTGTTGGGATATTCCGGGACAGT 431
|| || ||| | || |||||||||||||| || ||||||||||||||||| || ||| |
Sbjct 460 GGCGTTCGTTTTGACCACCGGTATAAACAGCGCGTATGTGTTGGGATATTCAGGAACAAT 519
Query 432 CATGGTTCCTTTGGGTTGGATAGGTGGTGTGGTTGGTC-TCATTCTTGCTACCGCGATCT 490
||||||||||| |||||||| |||||||||||||||| || || ||||||| || ||||
Sbjct 520 TATGGTTCCTTTAGGTTGGATTGGTGGTGTGGTTGGTCTTC-TTATTGCTACTGCAATCT 578
Query 491 CCCTTTACGCAAACACTCTTATCGCCAAGCTTCATGAGTTTGGTGGCAAAAGACACATTC 550
| ||||| ||||||||||| || || |||||||||||||||||||||| |||||||||||
Sbjct 579 CTCTTTATGCAAACACTCTAATAGCTAAGCTTCATGAGTTTGGTGGCAGAAGACACATTC 638
Query 551 GTTATAGAGATCTGGCAGGCTTCATCTATGGTA-AAAAGATGTATCGTGTTACATGGGGA 609
| |||||||| || || || ||||| || |||| || | | |||| | |||||||||||
Sbjct 639 GCTATAGAGACCTTGCTGGATTCATTTACGGTAGGAAGGCT-TATCATCTTACATGGGGA 697
Query 610 TTACAATATGTCAATCTTTTCATGATTAATTGTGGCTTCATCATACTTGCTGGTTCCGCC 669
|| |||||||| ||||||||||||||||||||||| ||||| || || ||||||||||||
Sbjct 698 TTGCAATATGTTAATCTTTTCATGATTAATTGTGGATTCATTATCCTAGCTGGTTCCGCC 757
Query 670 TTAAAGGCTGTTTATGTTCTTTTTAGAGATGA-CAGT-CTCATGAAACTGCCTCACTTTA 727
||||||||||||||||| ||||| || ||||| || | | ||||||||| ||||| ||||
Sbjct 758 TTAAAGGCTGTTTATGTGCTTTTCAGGGATGATCA-TAC-CATGAAACTACCTCATTTTA 815
Query 728 TCGCCATCGCGGGTGTTG-TATGTGCAATTTTCGCAATCGGTATTCCTCATTTATCAGCT 786
| ||||| || ||| ||| | ||||| |||||||| || || |||||||||||||| |||
Sbjct 816 TAGCCATTGCTGGT-TTGATTTGTGCGATTTTCGCTATTGGGATTCCTCATTTATCGGCT 874
Query 787 CTTGGAATCTGGCTAGGAGTTTCAACAATCCTCAG-CATAATCTACATTGTTGTTGCAAT 845
||||| ||||||| |||||||| || ||||||| | | ||||| |||||||| |||||
Sbjct 875 CTTGGGGTCTGGCTTGGAGTTTCGACCTTCCTCAGTC-TCATCTATATTGTTGTGGCAAT 933
Query 846 AGTTCTATCAGCTAAAGATGGAGTAAACA-AGCCTGAAAGAGATTACAACATACAAGGAT 904
|| ||||| | || |||||||||||| | | ||| |||||||||| | ||||||||||
Sbjct 934 CGTGCTATCGGTTAGAGATGGAGTAAAAACA-CCTTCAAGAGATTACGAGATACAAGGAT 992
Query 905 CATCAATAAACAAACTCTTTACCATAACAGGAGCAGCTGCAAATCTGGTTTTCGCATTCA 964
||||| | | |||||| |||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 993 CATCATTGAGCAAACTTTTTACCATCACAGGAGCAGCCGCAAATCTGGTTTTCGCATTCA 1052
Query 965 ACAC-GGGAATGCTCCCGGAAATACAGGCAACAGTGAAGCAACCGGTGGTTAAAAACATG 1023
|||| |||| |||| || ||||| ||||||||||||| |||||| || ||||||||||||
Sbjct 1053 ACACCGGGA-TGCTTCCAGAAATTCAGGCAACAGTGAGGCAACCAGTTGTTAAAAACATG 1111
Query 1024 ATGAAGGCTCTGTATTTTCAATTCACTGTTGGTGTTTTACCGATGTACGCGGTTACATTC 1083
||||||||||| || ||||||||||| | |||||||||||||||||||| |||||||||
Sbjct 1112 ATGAAGGCTCTATACTTTCAATTCACAGCGGGTGTTTTACCGATGTACGCAGTTACATTC 1171
Query 1084 ATCGGTTATTGGGCTTACGGGTCCTCGACATCGACTTATCTGTTAAACAGCGTCAGTGGA 1143
||||| ||||||||||| || ||||| || ||||| ||||| ||||||| || | |||
Sbjct 1172 ATCGGATATTGGGCTTATGGATCCTCAACCTCGACCTATCTACTAAACAGTGTTAATGGC 1231
Query 1144 CCTCTCTGGGTCAAAGCCCTCGCTAACATTTCAGCTTTTCTCCAATCTGTTATCTCTTTA 1203
|| ||||||||||||||||| |||||| | || ||| | || |||||||||||||||||
Sbjct 1232 CCACTCTGGGTCAAAGCCCTTGCTAACGTCTCTGCTATCCTTCAATCTGTTATCTCTTTG 1291
Query 1204 CATATTTTTGCAAGTCCGACTTATGAGTATATGGACACAAAGTATGG-AGTCAAAGGAAG 1262
|| || ||||| ||||| || |||||||| ||||||||||||||||| | |||||||||
Sbjct 1292 CACATATTTGCGAGTCCAACATATGAGTACATGGACACAAAGTATGGGA-TCAAAGGAAA 1350
Query 1263 TCCATTAGC-ATTGAAGAATCTGTTGTTTAGAA-CAGTAGC-ACGAGGAAGCTACATCGC 1319
||||| || || ||||| ||| ||||||| | || | || | |||| | ||||| ||
Sbjct 1351 CCCATTTGCGATA-AAGAACCTGCTGTTTAGGATCA-TGGCGA-GAGGCGGGTACATAGC 1407
Query 1320 GGTAAGCACACTTCTCTCTGCGCTTTTGCCGTTTCTCGGAGATTTCATGAGCCTCACCGG 1379
||||||||| ||| |||| ||||| |||||||| ||||| || ||||||||||| || ||
Sbjct 1408 GGTAAGCACGCTTATCTCAGCGCTGTTGCCGTTCCTCGGTGACTTCATGAGCCTAACTGG 1467
Query 1380 AGCTA-TAAGCACGTTCCCTCTCACATTCATAT-TAGCGAATCACATGTATCT-TGTTGC 1436
|| | | ||||| ||||||||||||||||| | |||| || |||||||| || | ||
Sbjct 1468 TGC-AGTGAGCACATTCCCTCTCACATTCAT-TCTAGCCAACCACATGTA-CTATAAGGC 1524
Query 1437 TATGAACGATAAGCTTAGT-CTTGTGCAAAAGCTATGGCATTGGCTTAATGTT-TGCGTC 1494
| |||| ||||||| | | || ||||||||||||||||||||||||| ||| | | ||
Sbjct 1525 AAAGAACAATAAGCTGAATGCTA-TGCAAAAGCTATGGCATTGGCTTAACGTTGT-CTTC 1582
Query 1495 TTTGGATTAATGTCTCTTGCTGCTGCTATTGCTGCTGTTAGACTCATCTCTGTTGATTCC 1554
||| | || |||||| ||||||| || ||||| ||||| ||||||||| | |||||||||
Sbjct 1583 TTTAGTTTGATGTCTGTTGCTGCAGCCATTGCAGCTGTCAGACTCATCGCCGTTGATTCC 1642
Query 1555 AAGAACTTCCATGTTTTTGCTGAT 1578
|| || |||||||||||||| |||
Sbjct 1643 AAAAATTTCCATGTTTTTGCAGAT 1666
> AT2G36590.1 | Symbols: ProT3, ATPROT3 | proline transporter 3
| chr2:15343006-15345337 REVERSE LENGTH=1597
Length=1597
Score = 1086 bits (588), Expect = 0.0
Identities = 1059/1285 (82%), Gaps = 37/1285 (3%)
Strand=Plus/Plus
Query 312 GTTCGATCTCGAAGTCCCTGAGACTGCTCATCAGATTAGCAGCGATTCATGGTTTCAGGT 371
||| ||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 210 GTT-GATATCGAAATCCCTGACACTGCTCATCAGATTAGCAGCGATTCATGGTTTCAGGC 268
Query 372 AGCATTTGTTCTAACAACCGGTATAAACAGTGCCTATGTGTTGGGATATTCCGGGACAGT 431
||| || ||||| ||||| |||||||||| || || |||||||||||||| || |||||
Sbjct 269 AGCGTTCGTTCTGACAACAAGTATAAACAGCGCATACGTGTTGGGATATTCAGGAACAGT 328
Query 432 CATGGTTCCTTTGGGTTGGATAGGTGGTGTGGTTGGTCTCATTCTTGCTACCGCGATCTC 491
|||||||||||| || ||||| ||||||||||||||||| ||||||||||| || |||||
Sbjct 329 CATGGTTCCTTTAGGATGGATTGGTGGTGTGGTTGGTCTTATTCTTGCTACTGCAATCTC 388
Query 492 CCTTTACGCAAACACTCTTATCGCCAAGCTTCATGAGTTTGGTGGCAAAAGACACATTCG 551
|| || ||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 389 ACTCTATGCAAACACTCTCGTAGCCAAGCTTCATGAGTTTGGTGGCAAAAGACACATTCG 448
Query 552 TTATAGAGATCTGGCAGGCTTCATCTATGGTAAAAAGA-TGTATCGTGTTACATGGG-GA 609
|||||||| || || || ||||| || |||| |||| | ||| || ||||||||| |
Sbjct 449 CTATAGAGACCTTGCGGGATTCATTTACGGTAGAAAGGCT-TATTGTCTTACATGGGTG- 506
Query 610 TTACAATATGTCAATCTTTTCATGATTAATTGTGGCTTCATCATACTTGCTGGTTCCGCC 669
|| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 507 TTGCAATATGTCAATCTTTTCATGATTAATTGTGGTTTCATCATACTAGCTGGTTCCGCC 566
Query 670 TTAAAGGCTGTTTATGTTCTTTTTAGAGATGA-CA-GTCTCATGAAACTGCCTCACTTTA 727
||||||||||||||||| |||||||| ||||| || | | |||||| | ||||| ||||
Sbjct 567 TTAAAGGCTGTTTATGTGCTTTTTAGGGATGATCATG-C-CATGAAGTTACCTCATTTTA 624
Query 728 TCGCCATCGCGGGTGTTG-TATGTGCAATTTTCGCAATCGGTATTCCTCATTTATCAGCT 786
| || || |||||| | | | ||||| |||| || || || ||||||||||| || |||
Sbjct 625 TAGCTATTGCGGGTCT-GATTTGTGCGGTTTTTGCTATTGGAATTCCTCATTTGTCGGCT 683
Query 787 CTTGGAATCTGGCTAG-GAGTTTCAACAATCCTCAGCATAATCTACATTGTTGTTGCAAT 845
||||| || ||||| | | ||||| || ||||||||| | ||||| || ||||| |||||
Sbjct 684 CTTGGGATATGGCTTGCG-GTTTCGACTATCCTCAGCCTCATCTATATCGTTGTGGCAAT 742
Query 846 AGTTCTATCAGCTAAAGATGGAGT-AAA-CAAGCCTGAAAGAGATTACAACATACAAGGA 903
|| ||||| | |||||||||||| ||| || ||| |||||||||| | |||||||||
Sbjct 743 CGTGCTATCGGTTAAAGATGGAGTTAAAGCA--CCTTCAAGAGATTACGAGATACAAGGA 800
Query 904 TCATCAATAAACAAACTCTTTACCATAACAGGAGCAGCTGCAA-ATCTGGTTTTCGCATT 962
||| || ||| |||||| |||||||| || |||||||| || | | || ||||||| |||
Sbjct 801 TCACCACTAAGCAAACTTTTTACCATCACTGGAGCAGCCGCTACA-CTAGTTTTCGTATT 859
Query 963 CAACAC-GGGAATGCTCCCGGAAATACAGGCAACAGTGAAGCAACCGGTGGTTAAAAACA 1021
|||||| |||| |||| || ||||| ||||||||||| |||||||| || || |||||||
Sbjct 860 CAACACAGGGA-TGCTTCCAGAAATTCAGGCAACAGTAAAGCAACCAGTAGTAAAAAACA 918
Query 1022 TGATGAAGGCTCTGTATTTTCAATTCACTGTTGGTGTTTTACCGATGTACGCGGTTACAT 1081
||||||||||||| || ||||||||||| || |||||||||||||||| |||||| ||
Sbjct 919 TGATGAAGGCTCTATACTTTCAATTCACGGTGGGTGTTTTACCGATGTTTGCGGTTGTAT 978
Query 1082 TCATCGGTTATTGGGCTTACGGGTCCTCGACATCGACTTATCTGTTAAACAGCGTCAGTG 1141
||||||| |||||||||||||| |||||||| ||| | ||||| |||||| ||| | ||
Sbjct 979 TCATCGGGTATTGGGCTTACGGATCCTCGACCTCGCCCTATCTACTAAACAACGTTAATG 1038
Query 1142 GACCTCTCTGGGTCAAAGCCCTCGCTAACATTTCAGCTTTTCTCCAATCTGTTATCTCTT 1201
| || || ||||| |||||||| |||||||| || ||| | || ||||| |||||||| |
Sbjct 1039 GTCCACTTTGGGTTAAAGCCCTTGCTAACATCTCCGCTATCCTTCAATCCGTTATCTCGT 1098
Query 1202 TACATATTTTTGCAAGTCCGACTTATGAGTATATGGACACAAAGTATGG-AGTCAAAGGA 1260
| || |||||||||||||| || |||||||| |||||||| |||| ||| | ||||||||
Sbjct 1099 TGCACATTTTTGCAAGTCCAACATATGAGTACATGGACACCAAGTTTGGGA-TCAAAGGA 1157
Query 1261 AGTCCATTAGCATTGAAGAATCT-GTTGTTTAGAA-CAGTAGCACGAGGAAGCTACATCG 1318
| ||||| ||||| ||||| || ||||||||| | || | ||| |||| | ||||| |
Sbjct 1158 AACCCATTGGCATTAAAGAA-CTTGTTGTTTAGGATCA-TGGCAAGAGGCGGGTACATAG 1215
Query 1319 CGGTAAGCACACTTCTCTCTGCGCTTTTGCCGTTTCTCGGAGATTTCATGAGCCTCACCG 1378
| || || || |||||||| || || |||||||| || || || |||||||||||||| |
Sbjct 1216 CAGTTAGTACGCTTCTCTCAGCACTCTTGCCGTTCCTTGGGGACTTCATGAGCCTCACTG 1275
Query 1379 GAGCTA-TAAGCACGTTCCCTCTCACATTCATAT-TAGCGAATCACATGTATCT-TGTTG 1435
| || | | ||||| ||||| || |||||||| | |||| || |||||||| || | |
Sbjct 1276 GTGC-AGTGAGCACATTCCCCCTTACATTCAT-TCTAGCCAACCACATGTA-CTATAAGG 1332
Query 1436 CTATGAACGATAAGCTTAGT-CTTGTGCAAAAGCTATGGCATTGGCTTAATGTT-TGCGT 1493
||| |||| ||||||| | | ||| ||||||||||||| |||||||| || ||| | | |
Sbjct 1333 CTAAGAACAATAAGCTCAATACTT-TGCAAAAGCTATGCCATTGGCTCAACGTTGT-CTT 1390
Query 1494 CTTTGGATTAATGTCTCTTGCTGCTGCTATTGCTGCTGTTAGACTCATCTCTGTTGATTC 1553
||| | || |||||| ||||||| || ||||| ||| |||| |||||| | |||| ||
Sbjct 1391 CTTCAGTTTGATGTCTGTTGCTGCCGCCATTGCAGCTCTTAGGCTCATCGCCCTTGACTC 1450
Query 1554 CAAGAACTTCCATGTTTTTGCTGAT 1578
||| |||||||| |||||||| |||
Sbjct 1451 CAAAAACTTCCACGTTTTTGCAGAT 1475
> AT1G41890.1 | Symbols: | pseudogene, proline transporter 2,
similar to GB:CAA65053 from (Arabidopsis thaliana); blastp match
of 57% identity and 6.6e-110 P-value to GP|7415521|dbj|BAA93437.1||AB022783
amino acid permease {Oryza sativa} | chr1:15652635-15656463
REVERSE LENGTH=3829
Length=3829
Score = 632 bits (342), Expect = 3e-180
Identities = 389/412 (94%), Gaps = 2/412 (0%)
Strand=Plus/Plus
Query 1207 ATTTTTGCAAGTCCGACTTATGAGTATATGGACACAAAGTATGGAGTCAAAGGAAGTCCA 1266
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 3188 ATTTTTGCAAGTCCGACTTATGAGTATATGGACACAAAGTATGGAGTCAAATGAAGACCA 3247
Query 1267 TTAGCATTGAAGAATCTGTTGTTTAGAACAGTAGCACGAGGAAGCTACATCGCGGTAAGC 1326
|||| | | || |||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 3248 TTAGGAATAAAAAATCTGTTGTTTAGAACAGTAGCAAGAGGAAGCTACATCGCGGTGAGC 3307
Query 1327 ACACTTCTCTCTGCGCTTTTGCCGTTTCTCGGAGATTTCATGAGCCTCACCGGAGCTATA 1386
|| |||||||| || ||||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct 3308 ACTCTTCTCTCGGCTCTTTTACCGTTTCTCGGAGATTTCATGAGCCTCACTGGAGCAATA 3367
Query 1387 AGCACGTTCCCTCTCACATTCATATTAGCGAATCACATGTATCTTGTTGCTATGAACGAT 1446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3368 AGCACGTTCCCTCTCACATTCATATTAGCGAATCACATGTATCTTGTTGCTATGAACGAT 3427
Query 1447 AAGCTTAGTCTTGTGCAAAAGCTATGGCATTGGCTTAATGTTTGCGTCTTTGGATTAATG 1506
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 3428 AAGCTTAGTCTTGTGCAAAAGCTTTGGCATTGGCTTAATGTTTGCTTCTTTGGATTAATG 3487
Query 1507 TCTCTTGCTGCTGCTATTGCTGCTGTTAGACTCATCTCTGTTGATTCC-AAGAACTTCCA 1565
||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||
Sbjct 3488 TCTCTTGCTGCTGCTATTGCTGCTGTTAGACTCATCTCTGTGGACTCCCAAGAACTTCCA 3547
Query 1566 TGTTTTTGCTGATGTTTGATTTAAAACGTATTCGACATTGTTAACGTTGTAA 1617
||||||||||||||||||||| |||| || |||||||||||||||| |||||
Sbjct 3548 TGTTTTTGCTGATGTTTGATT-AAAATGTCTTCGACATTGTTAACGATGTAA 3598
Score = 342 bits (185), Expect = 5e-93
Identities = 207/218 (95%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 989 AGGCAACAGTGAAGCAACCGGTGGTTAAAAACATGATGAAGGCTCTGTATTTTCAATTCA 1048
|||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct 2883 AGGCGACAGTGAAGCAACCGGTCGTTAAAAACATGATGAAAGCTCTGTATTTTCAGTTCA 2942
Query 1049 CTGTTGGTGTTTTACCGATGTACGCGGTTACATTCATCGGTTATTGGGCTTACGGGTCCT 1108
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 2943 CTGTTGGTGTTTTACCGATGTATGCGGTTACATTCATCGGATATTGGGCTTACGGGTCCT 3002
Query 1109 CGACATCGACTTATCTGTTAAACAGCGTCAGTGGACCTCTCTGGGTCAAAGCCCTCGCTA 1168
||||||||||||||||||| || ||||||||||||||||| ||||||||||| |||||||
Sbjct 3003 CGACATCGACTTATCTGTTTAATAGCGTCAGTGGACCTCTTTGGGTCAAAGCACTCGCTA 3062
Query 1169 ACATTTCAGCTTTTCTCCAATCTGTTATCTCTTTACAT 1206
| ||||||||||||||||||||||||||||||||||||
Sbjct 3063 ATATTTCAGCTTTTCTCCAATCTGTTATCTCTTTACAT 3100
Score = 302 bits (163), Expect = 9e-81
Identities = 183/193 (95%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 674 AGGCTGTTTATGTTCTTTTTAGAGATGACAGTCTCATGAAACTGCCTCACTTTATCGCCA 733
||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 2414 AGGCTGTTTATGTACTTTTTAGAGATAATTGTCTCATGAAACTGCCTCACTTTATCGCCA 2473
Query 734 TCGCGGGTGTTGTATGTGCAATTTTCGCAATCGGTATTCCTCATTTATCAGCTCTTGGAA 793
||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||
Sbjct 2474 TCGCGGGTGTTGTATGTGCGATTTTGGCCATCGGTATTCCTCATTTATCAGCTCTTGGAA 2533
Query 794 TCTGGCTAGGAGTTTCAACAATCCTCAGCATAATCTACATTGTTGTTGCAATAGTTCTAT 853
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 2534 TCTGGCTAGGAGTTTCAACAATCCTTAGCATAATCTACATTATTGTTGCAATAGTTCTAG 2593
Query 854 CAGCTAAAGATGG 866
|||||||||||||
Sbjct 2594 CAGCTAAAGATGG 2606
Score = 248 bits (134), Expect = 1e-64
Identities = 148/155 (95%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 356 ATTCATGGTTTCAGGTAGCATTTGTTCTAACAACCGGTATAAACAGTGCCTATGTGTTGG 415
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 107 ATTCATGGTTTCAGGTAGCATTTGTTATAACAACCGGTATAAACAGTGCCTATGTGTTGG 166
Query 416 GATATTCCGGGACAGTCATGGTTCCTTTGGGTTGGATAGGTGGTGTGGTTGGTCTCATTC 475
|||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 167 GATATTCCAAGACAGTCATGGTTCCATTGGGTTGGATTGGTGGTGTGGTTGGTCTCATTC 226
Query 476 TTGCTACCGCGATCTCCCTTTACGCAAACACTCTT 510
||||||| || ||||||||||||||||||||||||
Sbjct 227 TTGCTACTGCAATCTCCCTTTACGCAAACACTCTT 261
Score = 147 bits (79), Expect = 4e-34
Identities = 92/98 (94%), Gaps = 2/98 (2%)
Strand=Plus/Plus
Query 580 GGTAAAAAGATGTATCGTGTTACATGGGGATTACAATATGTCAATCTTTTCATGATTAAT 639
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 2240 GGTAAAAAGATGTATCGTGTTACATGGGGATTGCAATATGTCTATCTTTTCATGATTAAT 2299
Query 640 TGTGGCTTCATCATACTTGCTGGTTCCG-CCTTAAAGG 676
|||| ||||||| ||||||||||||| | |||||||||
Sbjct 2300 TGTGCCTTCATCTTACTTGCTGGTTC-GACCTTAAAGG 2336
Score = 145 bits (78), Expect = 2e-33
Identities = 80/81 (99%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 505 ACTCTTATCGCCAAGCTTCATGAGTTTGGTGGCAAAAGACACATTCGTTATAGAGATCTG 564
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2091 ACTCTTATCGCCAAGCTTCATGAGTTTGGTGGCAAAAGACACATTCGTTATAGAGATCTC 2150
Query 565 GCAGGCTTCATCTATGGTAAA 585
|||||||||||||||||||||
Sbjct 2151 GCAGGCTTCATCTATGGTAAA 2171
Score = 139 bits (75), Expect = 7e-32
Identities = 114/130 (88%), Gaps = 14/130 (11%)
Strand=Plus/Plus
Query 865 GGAGTAAACAAGCCTGAAAGAGATTACAACATACAAGGATCATCAATAAACAAACTCTTT 924
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2691 GGAGTAAACAAGCCTGAAAGAGATTACAACATACAAGGATCATCAATAAACAAACTCTTA 2750
Query 925 ACCATAACAGGAGCAGCTGCAAATCTGGTTTTCGCATTCAACACGGGAATGCTCCCGGAA 984
|||||||||||||||| | | || | |||||||||||||||||| ||||||
Sbjct 2751 ACCATAACAGGAGCAG-T-----T-TG-----C--ATTCAACACGGGAATGCTACCGGAA 2796
Query 985 ATACAGGCAA 994
||||||||||
Sbjct 2797 ATACAGGCAA 2806
> AT1G42090.1 | Symbols: | pseudogene, similar to betaine/proline
transporter, similar to proline transporter 1 GI:1769901
from (Arabidopsis thaliana); blastp match of 62% identity and
2.4e-33 P-value to GP|21069016|dbj|BAB93108.1||AB075902 betaine/proline
transporter {Avicennia marina} | chr1:15720083-15720696
REVERSE LENGTH=614
Length=614
Score = 383 bits (207), Expect = 3e-105
Identities = 224/232 (97%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 355 GATTCATGGTTTCAGGTAGCATTTGTTCTAACAACCGGTATAAACAGTGCCTATGTGTTG 414
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 96 GATTCATGGTTTCAGGTAGCATTTGTTCTAACAACCAGTATAAAAAGTGCCTATGTGTTG 155
Query 415 GGATATTCCGGGACAGTCATGGTTCCTTTGGGTTGGATAGGTGGTGTGGTTGGTCTCATT 474
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 156 GGATATTCTGGGACAGTCATGGTTCCTTTGGGTTGGATTGGTGGTGTGGTTGGTCTCATT 215
Query 475 CTTGCTACCGCGATCTCCCTTTACGCAAACACTCTTATCGCCAAGCTTCATGAGTTTGGT 534
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 216 CTTGCTACTGCAATCTCCCTTTACGCAAACACTCTTATCGCCAAGCTTCATGAGTTTGGT 275
Query 535 GGCAAAAGACACATTCGTTATAGAGATCT-GGCAGGCTTCATCTATGGTAAA 585
||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 276 GGCAAAAGACACATTCGTTATAGAGATCTCGG-AGGCTTCATCTATGGTAAA 326
Score = 147 bits (79), Expect = 4e-34
Identities = 92/98 (94%), Gaps = 2/98 (2%)
Strand=Plus/Plus
Query 580 GGTAAAAAGATGTATCGTGTTACATGGGGATTACAATATGTCAATCTTTTCATGATTAAT 639
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 396 GGTAAAAAGATGTATCGTGTTACATGGGGATTGCAATATGTCAATCTTTTTATGATTAAT 455
Query 640 TGTGGC-TTCATCATACTTGCTGGTTCCGCCTTAAAGG 676
|||| | |||||||||||||||||||| |||| |||||
Sbjct 456 TGTG-CATTCATCATACTTGCTGGTTCGGCCTAAAAGG 492
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80120069820
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5