BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486011
Length=541
Score E
Sequences producing significant alignments: (Bits) Value
AT1G41880.1 | Symbols: | Ribosomal protein L35Ae family protei... 833 0.0
AT3G55750.1 | Symbols: | Ribosomal protein L35Ae family protei... 821 0.0
> AT1G41880.1 | Symbols: | Ribosomal protein L35Ae family protein
| chr1:15651027-15652542 REVERSE LENGTH=729
Length=729
Score = 833 bits (451), Expect = 0.0
Identities = 515/545 (94%), Gaps = 8/545 (1%)
Strand=Plus/Plus
Query 1 TTTTTCTGTGTGGATTCGCTCGCCGGCATAAAAGAG-G--GGAAGAGGAAGAAGACAGTT 57
||||||| |||| ||||||||| ||||||||||||| | ||||||||||| || || |
Sbjct 43 TTTTTCTCTGTGAATTCGCTCGGCGGCATAAAAGAGAGTAAGAAGAGGAAGACGAGAG-T 101
Query 58 TGCAAGGATTGAAAATGAAGGGTCGTCAAGGAGAGAGAGTTAGATTGTATGTTCGAGGAA 117
| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 102 TACAAGGATTGAAAATGAAGGGACGTCAAGGAGAGAGAGTTAGATTGTATGTTCGTGGAA 161
Query 118 CAGTCCTCGGTTACAAGAGGTCCAAGTCCAACCAATATCCCAACACTTCTCTCATCCAGA 177
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 162 CAGTCCTCGGCTACAAGAGGTCCAAGTCGAACCAATATCCCAACACTTCTCTCATCCAGA 221
Query 178 TTGAAGGTGTGAACACTCAAGAGGAGGTTAACTGGTACAAGGGTAAGCGTTTGGCTTACA 237
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 222 TTGAAGGTGTGAACACTCAAGAGGAGGTCAATTGGTACAAGGGTAAGCGTTTGGCTTACA 281
Query 238 TCTACAAAGCAAAGACAAAGAAGAACGGTTCTCACTACCGTTGCATTTGGGGCAAAGTCA 297
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 TCTACAAGGCAAAGACAAAGAAGAACGGTTCTCACTACCGTTGCATTTGGGGCAAAGTCA 341
Query 298 CTAGGCCTCATGGTAACAGCGGAGTTGTCCGTTCTAAGTTCACTTCAAACCTACCACCTA 357
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 342 CTAGGCCTCATGGTAACAGCGGTGTTGTCCGTTCTAAGTTCACTTCAAACCTACCACCCA 401
Query 358 AGTCAATGGGAGCTAGAGTCAGAGTCTTCATGTACCCAAGCAACATATGAG-AGGGCTAG 416
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||
Sbjct 402 AGTCAATGGGAGCTAGAGTCAGAGTCTTCATGTACCCTAGCAACATATGAGGAGGA-TAG 460
Query 417 -TTTCAAGAACTATCGGAAGGAATCACCATTATCATTTCTCAGGAGCTGTAGTTTATCTA 475
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 461 ATTTCAAGAAGTATCGGAAGGAATCGCCATTATCATTTCTCAGGAGCTGTAGTTTATCTA 520
Query 476 TTCACTTTTGTTCTAGACTCTCTGTTGGTTTTGATTTTATCTTTAGACCAAGTAAAACAA 535
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 521 TTCACTTTTGTTCTAAACTCTCTGTTGGTTTTGATTTTATCTTTAGACGAAGTAAAACA- 579
Query 536 TTTTT 540
|||||
Sbjct 580 TTTTT 584
> AT3G55750.1 | Symbols: | Ribosomal protein L35Ae family protein
| chr3:20698553-20700067 FORWARD LENGTH=656
Length=656
Score = 821 bits (444), Expect = 0.0
Identities = 515/548 (94%), Gaps = 10/548 (2%)
Strand=Plus/Plus
Query 1 TTTTTCTGTGTGGATTCGCTCGCCGGCATAAAAGAG-G--GGAAGAGGAAGAAGACAGTT 57
||||||| |||| | ||||||||||||||||||||| | |||||||||||||| || |
Sbjct 16 TTTTTCTCTGTGAAATCGCTCGCCGGCATAAAAGAGAGTCAGAAGAGGAAGAAGAGAG-T 74
Query 58 TGCAAGGATTGAAAATGAAGGGTCGTCAAGGAGAGAGAGTTAGATTGTATGTTCGAGGAA 117
| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 75 TACAAGGATTGAAAATGAAGGGACGTCAAGGAGAGAGAGTTAGATTGTATGTTCGTGGAA 134
Query 118 CAGTCCTCGGTTACAAGAGGTCCAAGTCCAACCAATATCCC-AACACTTCTCTCATCCAG 176
|||||||||||||||||||||||||||| |||||||| ||| |||||||||||| |||||
Sbjct 135 CAGTCCTCGGTTACAAGAGGTCCAAGTCGAACCAATA-CCCTAACACTTCTCTCGTCCAG 193
Query 177 ATTGAAGGTGTGAACACTCAAGAGGAGGTTAACTGGTACAAGGGTAAGCGTTTGGCTTAC 236
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 194 ATTGAAGGTGTGAACACTCAAGAGGAGGTTAATTGGTACAAGGGTAAGCGTTTGGCTTAC 253
Query 237 ATCTACAAAGCAAAGACAAAGAAGAACGGTTCTCACTACCGTTGCATTTGGGGCAAAGTC 296
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 254 ATCTACAAGGCAAAGACAAAGAAGAACGGTTCTCACTACCGTTGCATTTGGGGCAAAGTC 313
Query 297 ACTAGGCCTCATGGTAACAGCGGAGTTGTCCGTTCTAAGTTCACTTCAAACCTACCACCT 356
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 314 ACTAGGCCTCATGGTAACAGTGGTGTTGTCCGTTCTAAGTTCACTTCAAACCTACCACCC 373
Query 357 AAGTCAATGGGAGCTAGAGTCAGAGTCTTCATGTACCCAAGCAACATATGAG-AGGGCTA 415
|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||
Sbjct 374 AAGTCAATGGGAGCTAGAGTCAGAGTCTTCATGTACCCTAGCAACATATGAGGAGG-CTA 432
Query 416 G-TTTCAAGAACTATCGGAAGGAATCACCATTATCATTTCTCAGGAGCTGTAGTTT-ATC 473
| |||||| || |||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 433 GATTTCAACAAGTATCGGAAGGAATCGCCATTATCATTTCTCAGGAGCTGTAGTTTTATC 492
Query 474 TATTCACTTTTGTTCTAGACTCTCTGTTGGTTTTGATTTTATCTTTAGACCAAGTAAAAC 533
||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 493 TATTCACTTTTATTCTAGACTCTCTGTTGGTTTTGATTTTATCTTGAGACGAAGTAAAAC 552
Query 534 AATTTTTT 541
| ||||||
Sbjct 553 ATTTTTTT 560
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25920819852
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5