BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486012
Length=2030
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55760.1 | Symbols: | unknown protein; LOCATED IN: chloropl... 2946 0.0
> AT3G55760.1 | Symbols: | unknown protein; LOCATED IN: chloroplast
stroma, chloroplast; EXPRESSED IN: 16 plant structures;
EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G42430.2); Has
176 Blast hits to 125 proteins in 40 species: Archae - 0;
Bacteria - 3; Metazoa - 19; Fungi - 9; Plants - 81; Viruses
- 0; Other Eukaryotes - 64 (source: NCBI BLink). | chr3:20700435-20703056
FORWARD LENGTH=2006
Length=2006
Score = 2946 bits (1595), Expect = 0.0
Identities = 1828/1937 (94%), Gaps = 29/1937 (1%)
Strand=Plus/Plus
Query 109 GAAGAAGAAGAAACAAATGGCTTCGCGTTTAGGTGTTTCTATAGGCGCCGCTTTAGGTTC 168
||||||||||||||||||||||| ||||||||||||||||||||| || ||||| |||||
Sbjct 84 GAAGAAGAAGAAACAAATGGCTTTGCGTTTAGGTGTTTCTATAGGGGCAGCTTTGGGTTC 143
Query 169 CTCTCATTGGGACGACGGACGACGAGTACGACGACGTGACTTCTCCACTTCTGTGAATTT 228
|||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||
Sbjct 144 CTCTCATTGGGACGACGGACAACGAGTACGACAACGTGACTTCTCCGCTTCTGTGAATTT 203
Query 229 CACGGCACCGG---CGA-ACGGAAGAAACCGGAGAGGTAGTAGAAGCGGTGTGAGAATTC 284
||| ||||||| ||| ||| || | | || |||||||||| ||||||||| ||||
Sbjct 204 CACCGCACCGGTTACGAGCCGG-AGGAGCTTAAGGGGTAGTAGAACCGGTGTGAGGATTC 262
Query 285 TTAGGGTTTCAAATGAAGGACGCGAATCGTACCTCGATATGTGGAAAAACGCTGTTGATC 344
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 263 TTAGGGTTTCAAATGAAGGACGCGAATCGTACCTCGATATGTGGAAGAACGCTGTTGATC 322
Query 345 GCGAGAAGAAAGAGAAGGCCTTTGAGAAAATTGCAGAGAATGTTGTAGCTGTTGATGGTG 404
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 323 GCGAGAAGAAAGAGAAGGCCTTTGAAAAAATTGCAGAGAATGTTGTAGCTGTTGATGGTG 382
Query 405 AGAAGGAGAAAGGAGGAGA-TATGGAGAAGAAGAGCGATGAGTTTCAAAAGATCCTTGAG 463
||||||||||||||||||| | ||||||||||||||||||||||||| |||||||| |||
Sbjct 383 AGAAGGAGAAAGGAGGAGACT-TGGAGAAGAAGAGCGATGAGTTTCAGAAGATCCTCGAG 441
Query 464 GTTTCGGTTGAGGAAAGGGATCGGATTCAGCGTATGCAGGTCGTTGATCGTGCCGCTGCT 523
||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 442 GTTTCCGTTGAGGAAAGAGATCGGATTCAGCGAATGCAGGTCGTTGATCGTGCCGCTGCC 501
Query 524 GCTATCTCTGCTGCTAGAGCGATTCTCGCCTCTAACAATTCCGGCGACGGCAAAGAAGGA 583
|| ||||| || |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 502 GCAATCTCCGCAGCTAGAGCTATTCTCGCCTCTAACAATTCCGGCGACGGCAAAGAAGGA 561
Query 584 TTTCCAAATGAAGAGAACACTGTCACAAGTGAAGTCACCGAGACACCGAAAAATCCTAAA 643
|| ||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 562 TTCCCAAATGAAGACAACACTGTCACAAGTGAAGTCACAGAGACACCGAAAAATGCTAAA 621
Query 644 CTTGGAATGTGGAGCAGAACAGTGTATGTGCCACGGTCAGAAACTTCTGGGACTGAGACA 703
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 622 CTTGGAATGTGGAGCAGAACAGTGTATGTGCCACGGTCAGAAACTTCAGGGACTGAGACA 681
Query 704 CCAGGACCAGATTTTTGGTCATGGACACCTCCTCAAGGTAGTGAAGTAACTTCAAATATG 763
||||||||||||||||||||||||||||||||||||||||||| | || || | | |
Sbjct 682 CCAGGACCAGATTTTTGGTCATGGACACCTCCTCAAGGTAGTG-A--AA-TT--AGT-T- 733
Query 764 AATGTGGACTTACAGGCTGTGGAAAAGCCTGCTGAGTTTCCAACTTTGCCAAATCCGGTA 823
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 734 -CTGTGGACTTGCAGGCTGTGGAAAAGCCTGCTGAGTTTCCAACTTTGCCAAATCCTGTA 792
Query 824 TTGGAGAAAGACAAATCAGCAGATTCTCTTTCGATACCCTATGAGAGTATGCTTTCTTCT 883
||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 793 TTGGAGAAAGATAAATCAGCGGATTCTCTTTCGATACCATATGAGAGTATGCTTTCTTCT 852
Query 884 GAAAGACATAGCTTTACTATCCCGCCTTTCGAGTCTTTGATCGAGGTTCGAAAAGAGGCA 943
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 853 GAAAGACATAGCTTTACTATCCCGCCTTTTGAGTCTTTGATTGAGGTTCGAAAAGAGGCT 912
Query 944 GAGACAAAGCCTAGTTCCGAGACTTCATCGACAGAACATGACCTTGAGCTCATATCTTCA 1003
||||| |||||||| |||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 913 GAGACGAAGCCTAGCTCCGAGACTTTATCGACAGAACATGACCTTGATCTCATATCTTCA 972
Query 1004 GCAAACGCGGAAGAAGCAGCTCGTGTTCTTGATAGTTTGGATGAATCTTCAACCCATGGA 1063
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 973 GCAAACGCGGAAGAAGTAGCTCGTGTTCTTGATAGTTTGGATGAATCTTCAACGCATGGA 1032
Query 1064 GTTAGTGAAGATGGATTGAAGTGGTGGAAGCAAACGGGTGTAGAGAAAAGACCTGATGGT 1123
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1033 GTTAGCGAAGATGGATTGAAGTGGTGGAAGCAAACGGGTGTGGAGAAAAGACCTGATGGT 1092
Query 1124 GTGGTTTGCAGGTGGACAATGATACGTGGGGTTACTGCTGATGGTGTTGTTGAGTGGCAA 1183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1093 GTGGTTTGCAGGTGGACAATGATACGTGGGGTTACTGCTGATGGTGTTGTTGAGTGGCAA 1152
Query 1184 GATAAGTATTGGGAGGCTTCTGATGATTTTGGGTTCAAGGAACTTGGTTCCGAGAAATCA 1243
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1153 GATAAGTATTGGGAGGCTTCTGATGATTTTGGGTTCAAGGAACTTGGTTCTGAGAAATCA 1212
Query 1244 GGACGTGATGCGACTGGAAACGTGTGGCGTGAGTTCTGGAGAGAGTCGATGAGCCAGGAG 1303
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1213 GGACGTGATGCCACTGGAAACGTGTGGCGTGAGTTCTGGAGAGAGTCAATGAGCCAGGAG 1272
Query 1304 AATGGTGTTGTGCATATGGAGAAAACTGCAGACAAGTGGGGAAAGAGTGGGCAAGGTGAT 1363
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1273 AATGGTGTTGTGCATATGGAGAAAACTGCAGACAAATGGGGAAAGAGTGGACAAGGTGAT 1332
Query 1364 GAATGGCAAGAGAAGTGGTTGGAGCATTACGATGCTACCGGAAAATCAGAAAAATGGGCT 1423
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 GAATGGCAAGAGAAATGGTGGGAGCATTACGATGCTACCGGAAAATCAGAAAAATGGGCT 1392
Query 1424 CATAAGTGGTGCAGTATCGACCGCAACACACCCCTTGATGCTGGCCACGCTCATGTCTGG 1483
|||||||||||||| || ||||||||||| || ||||| |||||||||||||||||||||
Sbjct 1393 CATAAGTGGTGCAGCATTGACCGCAACACGCCTCTTGACGCTGGCCACGCTCATGTCTGG 1452
Query 1484 CATGAGAGGTGGGGAGAGAAGTATGACGGACAAGGCGGAAGCACAAAGTACACAGACAAG 1543
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1453 CACGAGAGGTGGGGAGAGAAGTATGACGGGCAAGGCGGAAGCACAAAGTACACAGACAAG 1512
Query 1544 TGGGCCGAACGATGGGTTGGAGACGGTTGGGACAAATGGGGAGACAAATGGGACGAGAAC 1603
||||| ||||| ||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1513 TGGGCGGAACGGTGGGTAGGTGACGGTTGGGACAAATGGGGAGACAAATGGGACGAGAAC 1572
Query 1604 TTTAACCCGAGCGCTCAAGGAGTGAAACAAGGTGAGACTTGGTGGGAAGGGAAGCACGGC 1663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1573 TTTAACCCGAGCGCTCAAGGAGTGAAACAAGGTGAGACTTGGTGGGAAGGGAAGCACGGC 1632
Query 1664 GACAGATGGAACCGAAGCTGGGGCGAAGGTCACAACGGATCAGGATGGGTTCACAAATAC 1723
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1633 GACAGATGGAACCGAAGCTGGGGAGAAGGTCACAACGGATCAGGATGGGTTCACAAATAC 1692
Query 1724 GGAAAAAGCAGCAGCGGAGAACACTGGGACACACATGTACCACAAGAAACTTGGTATGAG 1783
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1693 GGAAAAAGCAGCAGCGGTGAACACTGGGACACACATGTACCACAAGAAACTTGGTATGAG 1752
Query 1784 AGGTTCCCTCACTTTGGCTTCTTCCACTGTTTTGACAACTCTGTTCAGCTCCGAGCCGTT 1843
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1753 AAGTTCCCTCACTTTGGCTTCTTCCACTGTTTTGACAACTCTGTTCAGCTCCGAGCCGTT 1812
Query 1844 AAGAAGCCTTCTGATATGTCCTAGATAAATCAAAGACTAAGCCATAAA-TA-AGTAAATA 1901
||||||||||||||||||||||||||| |||||| ||||||| ||||| || | ||||||
Sbjct 1813 AAGAAGCCTTCTGATATGTCCTAGATATATCAAATACTAAGC-ATAAAATATA-TAAATA 1870
Query 1902 AGCTGGGACAAT-AAT-AATTGGCCTACAATTTTAGAGTAGTTTGATCAAGTGCAATGTA 1959
|||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1871 AGCTGGGACAATCAAAGAATTGGCCTACAATATTAGAGTAGTTTGATCAAGTGCAATGTA 1930
Query 1960 T-TA-T-T--ATTATCACTTCTAATTTGTT-TCATGCTTTGGTGTTTGTTAATGAGTATG 2013
| || | | ||||| |||||||||||||| | |||||||||||||| ||||||||||||
Sbjct 1931 TGTAATATTTATTATGACTTCTAATTTGTTCT-ATGCTTTGGTGTTTCTTAATGAGTATG 1989
Query 2014 GCCTAAGTTTATTTGGT 2030
||| |||||||||||||
Sbjct 1990 GCCAAAGTTTATTTGGT 2006
Score = 99.0 bits (53), Expect = 2e-19
Identities = 53/53 (100%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 1 TTCCGTGTATTTTGGAGTTTCGTTCGAGGACAGATCTTGATTTGACTCAGCTC 53
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 19 TTCCGTGTATTTTGGAGTTTCGTTCGAGGACAGATCTTGATTTGACTCAGCTC 71
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100601892180
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5