BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486019
Length=1224
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55780.1 | Symbols: | Glycosyl hydrolase superfamily protei... 1857 0.0
> AT3G55780.1 | Symbols: | Glycosyl hydrolase superfamily protein
| chr3:20705627-20707021 FORWARD LENGTH=1290
Length=1290
Score = 1857 bits (1005), Expect = 0.0
Identities = 1095/1140 (96%), Gaps = 0/1140 (0%)
Strand=Plus/Plus
Query 1 ATGAAGAAAATGCActctctctcctcttacctcctcctccttatctcGTTAACCGCCATA 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGAAGAAAATGCACTCTCTCTCCTCTTATCTCCTCCTCCTTATCTCGTTAACCGCCATA 60
Query 61 GCTACACCTACGACAACCTCCGCCACGACGATCGGAGTCACCTACTCGACTCCAGCTTCA 120
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 61 GCTACACCTACGACAACCTCCGCCACAACGATCGGAGTCACATACTCGACTCCAGCTTCA 120
Query 121 ATATCCGGCACCGTACAACTATCACCGGACAGAATCGCCGAAAAAGTCGTTTCTATGAAG 180
|| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 121 ATCTCCGGCACCGTACAACTCTCACCGGACAGAATCGCCGAAAAAGTCGTTTCAATGAAC 180
Query 181 ATTCCGGCAGTGAGACTCCTCGATTCAAATCCGGCGATGATTCGTGCCTTCGCTTACACA 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATTCCGGCGGTGAGACTCCTCGATTCAAATCCGGCGATGATTCGTGCCTTCGCTTACACA 240
Query 241 AACGTATCTCTCTTCCTCTCCGTACCAAATCCTCTAGTTCCTCTCCTCGCTTCAAATCGT 300
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 241 AACGTATCTCTCTTCCTCTCCGTACCAAATCCACTAGTTCCTCTCCTCGCTTCAAATCGT 300
Query 301 TCGCTCGCGATGCGTTGGGTCTATCGCCATGTGCTTCCGTTCCATCCTCGCACCAAGATC 360
|| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 301 TCTCTCGCGATGCGTTGGGTCTATCGCCATGTGCTTCCTTTTTATCCTCGCACCAAGATC 360
Query 361 TCAATCATCTCCGTCGGAAACGACGTGATTTCATACTCGCCGGACGTATCTCCGTTTCTC 420
||||||||||||||||| |||||||||||||| || || |||||||||||||||||||||
Sbjct 361 TCAATCATCTCCGTCGGTAACGACGTGATTTCGTATTCTCCGGACGTATCTCCGTTTCTC 420
Query 421 CTCCGCGCGATGCAGAATGTTCATTTATCTCTCGTAGATCTGAGAATCTTCAAGATCTCT 480
||||| |||||||||||||||||| ||||||| |||||||||||||||| ||||||||||
Sbjct 421 CTCCGTGCGATGCAGAATGTTCATCTATCTCTTGTAGATCTGAGAATCTACAAGATCTCT 480
Query 481 GTATCGACGACGTTCTCTTTCTTCAACATCGTACCCACGGCGTTTCCACCTTCGTCGGCG 540
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 GTATCAACGACGTTCTCTTTCTTCAACATCGTACCCACGGCATTTCCACCTTCGTCGGCG 540
Query 541 CAGTTTCAACAACCTAACGGAGAAGTGATTATCAGACCGATTTTGCAATTCCTTGAAAGA 600
|||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||
Sbjct 541 CAGTTTCAACAACCTAACGGAGAAGTTATCATCAGACCGATTTTGCAATTCCTCGAAAGA 600
Query 601 ACGAATTCGTCTTTCTTGATCAATCTCTATCCCTACAATATGTATCGGTCTAGCTTCTCG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ACGAATTCGTCTTTCTTGATCAATCTCTATCCCTACAATATGTATCGGTCTAGCTTCTCG 660
Query 661 ATTCCGATTGGATTTGCTCTTTTTGAAGAGTTCCCGTTTAATTTCAGAGACGATCTCACC 720
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 661 ATTCCGATTGGATTTGCTCTTTTTGAAGAGTTCCCGTTCAATTTCAGAGATGATCTGACC 720
Query 721 ACCGGAGTTAGATACCGTAATCTGTTTGATATGATGGTTGATGCTGTGATTAGCTCTATG 780
|||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 721 ACCGGAGTAAGATACCGGAATCTTTTTGATATGATGGTTGATGCTGTGATTAGCTCTATG 780
Query 781 GCTGTTATGGGTCACGAGAATCTTCCGGTGATTGTGGCGGAGACTGGTTGGCCTAGCTCT 840
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GCTGTTATGGGTCATGAGAATCTTCCGGTGATTGTGGCGGAGACTGGTTGGCCTAGCTCT 840
Query 841 GGAATTGATGCTAGTGAAGTAGATGCGACGTTGTTGTATAGTGAGATGTTCTTGAAAGCT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GGAATTGATGCTAGTGAAGTAGATGCGACGTTGTTGTATAGTGAGATGTTCTTGAAAGCT 900
Query 901 TTGTTAACTCATCTGAGAAGTGGATGTGGAACACCGTTGAGGAAAGAAGGTGTTTCAGAG 960
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TTGTTGACTCATCTGAGAAGTGGATGTGGAACACCGTTGAGGAAAGAAGGTGTTTCAGAG 960
Query 961 GTTTATATCTTTGAGCTTGTTGAGAAAGATGCTAAGCAAGGGATTAGGAATTGGGGACTT 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GTTTATATCTTTGAGCTTGTTGAGAAAGATGCTAAGCAAGGGATTAGGAATTGGGGACTT 1020
Query 1021 CTGCATCATAACATGACTAGTAAGTACAGCTTTGAGTTCTCAGATGGAGGCAAAGCCGGA 1080
||||||||||||||||||||||||||||||| || ||||| ||||||||||||| | ||
Sbjct 1021 TTGCATCATAACATGACTAGTAAGTACAGCTTCGACTTCTCGGATGGAGGCAAAGTCAGA 1080
Query 1081 AGATACAAAGAGCTTTTAATTGGATTCTTTGTGCAAGTGGTAATGATAGGTTACGGCTAT 1140
|||| ||||||| |||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1081 AGATTCAAAGAGATTTTGGTTGGATTCTTTGTGCAAGTGGTTATGATAGGTTACGGCTAT 1140
Score = 71.3 bits (38), Expect = 2e-11
Identities = 42/44 (95%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 1181 GGAATGTAATTTTGGGTCTCACACATAGAAACTATAGAAGCTGA 1224
|||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1247 GGAATGGCATTTTGGGTCTCACACATAGAAACTATAGAAGCTGA 1290
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60140252910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5