BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg486020

Length=297
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G55790.1 | Symbols:  | unknown protein; Has 698 Blast hits t...   108    4e-23


> AT3G55790.1 | Symbols:  | unknown protein; Has 698 Blast hits 
to 549 proteins in 106 species: Archae - 0; Bacteria - 92; 
Metazoa - 317; Fungi - 24; Plants - 183; Viruses - 2; Other 
Eukaryotes - 80 (source: NCBI BLink). | chr3:20708280-20708591 
FORWARD LENGTH=312
Length=312

 Score =  108 bits (58),  Expect = 4e-23
 Identities = 70/76 (92%), Gaps = 0/76 (0%)
 Strand=Plus/Plus

Query  1   ATGGTTATACACAAATCAATTAAACTAATCGCTCAAATGTTACTATTACTACTAGCGATC  60
           ||||||||||||||||||||||  | ||||||||  ||||||||||||||||||||||||
Sbjct  1   ATGGTTATACACAAATCAATTACCCCAATCGCTCTGATGTTACTATTACTACTAGCGATC  60

Query  61  CATGCACATATCCAAG  76
           ||||||||||| ||||
Sbjct  61  CATGCACATATTCAAG  76



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13723095477


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5