BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486026
Length=1837
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55840.1 | Symbols: | Hs1pro-1 protein | chr3:20716995-2071... 2710 0.0
AT3G55830.1 | Symbols: EPC1 | Nucleotide-diphospho-sugar transf... 628 4e-179
> AT3G55840.1 | Symbols: | Hs1pro-1 protein | chr3:20716995-20718866
REVERSE LENGTH=1872
Length=1872
Score = 2710 bits (1467), Expect = 0.0
Identities = 1720/1842 (93%), Gaps = 18/1842 (1%)
Strand=Plus/Plus
Query 1 aaaaaaaaTGGCTGATTTGGATTTACAGAGGAATATGGTATCTCCAAAGCTCCACGTCAC 60
|||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 44 AAAAAAGATGGCTGATTTGGATTTACAGAGGAAGATGGTATCTCCGAAGCTCCACGTCAC 103
Query 61 TATTCCGGAGCCGTGTAAGCTCTCCTCCGTCTCTTCTCCAATATCCTCCTCTTCTTCCGC 120
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 104 CATTCCTGAGCCGTGTAAGCTCTCCTCCGTCTCTTCTCCAATCTCCTCCTCTTCTTCCGC 163
Query 121 CGCTTGCTCTGCCTACGAGCTTTACCTCCGTTTGCCGGAACTTAGAAACCTCTGGTTCTC 180
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 164 CGCTTGCTCTGCTTACGAGCTTTACCTCCGTTTGCCTGAACTTAGAAACCTCTGGTCCTC 223
Query 181 TCTCTATTTCCCTCACTGGATCTCCGAGCCGGTTCTCAAACCATCTCTTCAAGCTCTTGA 240
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 224 TCTCTATTTCCCTCACTGGATCTCCGAGCCCGTTCTCAAACCAGCTCTTCAAGCTCTTGA 283
Query 241 GATCACTTTCCGATTAATCCTCACCGTTGCTTCTGACAGACGTCCGTACATCAACCGCCG 300
|||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 284 GATCACTTTCCGGTTAATCCTCACCGTTGCTTCTGACACACGTCCTTACATCAACCGCCG 343
Query 301 CGAATGGATCCGACGGTTGGATTCTCTCTCCACGAGCCAGATCAAAATCGTGGCGGCTAT 360
|||||||||||||||||||||||| ||| | || |||||||| |||||||||||||||||
Sbjct 344 CGAATGGATCCGACGGTTGGATTCCCTCACTACCAGCCAGATAAAAATCGTGGCGGCTAT 403
Query 361 CTGCGAAGATGAAGACTACGACGACGATAACGTATCGGCGGCTCCGGTCAGCAATGGCTG 420
||||| |||||||||| || |||| || ||||||||||||||||||||||||||||||||
Sbjct 404 CTGCGGAGATGAAGACAACTACGAAGAGAACGTATCGGCGGCTCCGGTCAGCAATGGCTG 463
Query 421 GAGCTCGTTGAGCTTGCTTTCGGAGATCGCCACGTGTCGTAGATCGGAGAGTGTTGGACA 480
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 464 GAGCTCGTTGAGTTTGCTTTCGGAGATCGCCACGTGTCGTACATCGGAGAGTGTTGGACA 523
Query 481 GAAGATTTTGTCTACGATCGAGAATGAGATGCGTTGGTGTAAGTATACGCTCGGTTTAGG 540
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 GAAGATCTTGTCTACGATCGAGAATGAGATGCGTTGGTGTAAGTATACGCTCGGTTTAGG 583
Query 541 AGAACCAAACCTCGCCGGAAAACCGTATCTTCAATACGACGCCGTTTGTCGCCCGGAGGA 600
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 584 AGAACCAAACCTCGCCGGAAAACCGTATCTTCAATACGACGCCGTTTGTCTCCCGGAGGA 643
Query 601 GCTACACAGCCTTAAGAACAATCCTTACTCTGATCACATCGAGAACCAAGAGAATCAAAT 660
|||||| ||||| ||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 644 GCTACATAGCCTCAAGAACAATCCTTACGCAGATCACATCGAGAACCAAGAGAATCAAAT 703
Query 661 GCTCTACACTATTCATCAGATTCTTGAATCGTGGATTTATGTTTCTGTGAATCTTTTGTA 720
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 704 GCTCTACACTAGTCATCAGATTCTTGAATCGTGGATTTACGTTTCTGTGAATCTTTTATA 763
Query 721 TCGAATCGAATCAAGAATCGAAGAGGGAAAATTCGAAAAAGCTTCTTCTGACGTGTACTT 780
| |||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 764 TAGAATCGAATCGAGAATCGAAGAGGGAAAATTCGAAAAAGCTTCTTCAGACGTCTACTT 823
Query 781 GCTAGAGAGAATCTGGAAGCTTTTAACGGAGATAGAAGATTTACACATTCTGATGGATCC 840
| | |||||||||||||||||| || | ||||| ||||||||||||||||| ||||||||
Sbjct 824 GTTGGAGAGAATCTGGAAGCTTCTATCAGAGATTGAAGATTTACACATTCTTATGGATCC 883
Query 841 TGAAGATTTCTTGAAGGTGAAGAAACAGTTACAAATCAAATCAAC-TTCTCCAAACGACG 899
|||||||||||||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct 884 TGAAGATTTCTTGAAGGTGAAGAAACAGTTACAAATCAAATCGACGTT-TCCAAACGACG 942
Query 900 CGTTTTGTTTCAGGTCCAAGGGGCT-AGTAGAGATGGCCAAGATGTCGAAAGAGCTGAGA 958
| |||||||| ||||| ||||| || |||||||||||| |||||||| ||||||||||||
Sbjct 943 CATTTTGTTTTAGGTCAAAGGG-CTTAGTAGAGATGGCGAAGATGTCCAAAGAGCTGAGA 1001
Query 959 CAGAAAGTGCCAGCTGTACTTGAGGTGGAGGTGGATCCCACCGGAGGTCCGAGGTTGCAA 1018
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 CAGAAAGTGCCAGCTGTTCTTGAGGTGGAGGTGGATCCCACCGGAGGTCCGAGGTTGCAA 1061
Query 1019 GAGGCAGCGATGAAGCTTTACTCAAGGAAGACAGAGTACGAGAAGATACATTTGCTTCAG 1078
||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1062 GAGGCGGCGATGAAGCTTTACTCGAGGAAAACAGAGTACGAGAAGATACATTTGCTTCAG 1121
Query 1079 GGAATGCAGGCAGTCGAGTCGGCAGCGAAGAGATTCTTCTTCGGGTACCAGAAGTTGGTT 1138
||||||||||| || ||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct 1122 GGAATGCAGGCCGTGGAGTCTGCAGCCAAGAGATTCTTCTTCGGATACCAGAAGTTGGTT 1181
Query 1139 GCGGCCATGATTGGGAATGCGGAGGCGAATGCGAATAGAACCGTGGCGAATCACGAGTCG 1198
|| || |||||||||||||| ||||||||||| |||||||| |||||||||||||||||
Sbjct 1182 GCAGCGATGATTGGGAATGCAGAGGCGAATGCAAATAGAACGGTGGCGAATCACGAGTCC 1241
Query 1199 TATGATTCTCTGACTCATGTGTTTATGGAGCCACCGTATTACCCGAGCCTAGATGCCGCA 1258
|||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1242 TATGATTCACTGACTCAGGTGTTTATGGAGCCACCGTATTACCCGAGCCTAGACGCCGCA 1301
Query 1259 AAGACATTTCTGGGAGAGTTCTGGAGCCAATTGTGATGCAATGGACGATATTGATTGACA 1318
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1302 AAGACATTTCTGGGAGAGTTCTGGAGCCAATTGTGATGCAATGGAAGATATTGAC--ACA 1359
Query 1319 CAGCGACTTAACAAACACTATCAACAGATCTTACACTACTTAAATTTTTGGAAGCATGTA 1378
| | |||||||||||||||||||||||| | |||||||| |||||||||||||||| ||
Sbjct 1360 -A-CTACTTAACAAACACTATCAACAGATGTAACACTACTGAAATTTTTGGAAGCATCTA 1417
Query 1379 ACGATCAGTGTATGAATATAT--AACTAATTCTTTTTTAGCACAAAACAATATTTTCACA 1436
||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||
Sbjct 1418 ACGATCAGTGTATGAATATATGTAACTCATT-TTTTTTAGCACAAAACAATATTTTCACA 1476
Query 1437 GCAACAGATGTTACAAAAGGTACAATGAGGGTACATCATGCACTAGGCTACTACTATATC 1496
|| ||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1477 ACAGCAGATGTTACAAATGGTACAATGAGGGTACAACATACACTAGGCTACTACTATATC 1536
Query 1497 TCTTTGTAAGCTTCTACGAGAAA-CCCCATAAGCCACCAATTACAAACTTTCCCTCTCTA 1555
||||| ||||||||||||||||| |||||| ||||||| |||| ||||||| |||||||
Sbjct 1537 TCTTTATAAGCTTCTACGAGAAAACCCCATTAGCCACCGATTATAAACTTTTGCTCTCTA 1596
Query 1556 TCTTCTCGCTTACCGTAAAAGTAAGATCAGTTCTCTGGTTCAACTCTTACTTGGCATCAA 1615
||||| | |||||||||||||||||||||||||| | || || ||||||||||| ||||
Sbjct 1597 TCTTC-CTCTTACCGTAAAAGTAAGATCAGTTCTGTTTTT-AAGTCTTACTTGGCGTCAA 1654
Query 1616 ACCTGTCAATAGCTAGAACGTGAAGAGTAGTAGTAACCAGTGGAAGAGAAAAGCGGAAAT 1675
||| ||| |||||||||||||||||||||||| | ||||||||||||| | ||||||||
Sbjct 1655 ACCCGTCCATAGCTAGAACGTGAAGAGTAGTA--A-CCAGTGGAAGAGACA-GCGGAAAT 1710
Query 1676 GTACCGCCATGTGAAAGCAGCAATCACCAGAACCATAAATTGCGGCTATCCACGGCTTTC 1735
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1711 GTACTGCCATGCAAAAGCAGCAATCACCAGAACCATAAATTGCGGCTATCCACGGCTTTC 1770
Query 1736 ATGGAAGAGTATACAAGTGGCATTATCCCAAATTCTGCCACAAACCGATTTACGCAGTGT 1795
||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 1771 ATGGAAGTGTATACAAGTGGCATTTTCCCAAATTCTGCCACAAACCGGTTTACGCAGTGT 1830
Query 1796 GTTCTTTTTTCTGTGTGCCCTCCTATGCTACTAATTCCAGTT 1837
||||||||||||||||||||||||||||||||||||||||||
Sbjct 1831 GTTCTTTTTTCTGTGTGCCCTCCTATGCTACTAATTCCAGTT 1872
> AT3G55830.1 | Symbols: EPC1 | Nucleotide-diphospho-sugar transferases
superfamily protein | chr3:20714946-20717443 FORWARD
LENGTH=1470
Length=1470
Score = 628 bits (340), Expect = 4e-179
Identities = 419/456 (92%), Gaps = 10/456 (2%)
Strand=Plus/Minus
Query 1385 AGTGTATGAATATA--TAACTAATTCTTTTTTAGCACAAAACAATATTTTCACAGCAACA 1442
|||||||||||||| ||||| ||| |||||||||||||||||||||||||||| || ||
Sbjct 1470 AGTGTATGAATATATGTAACTCATT-TTTTTTAGCACAAAACAATATTTTCACAACAGCA 1412
Query 1443 GATGTTACAAAAGGTACAATGAGGGTACATCATGCACTAGGCTACTACTATATCTCTTTG 1502
||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 1411 GATGTTACAAATGGTACAATGAGGGTACAACATACACTAGGCTACTACTATATCTCTTTA 1352
Query 1503 TAAGCTTCTACGAG-AAACCCCATAAGCCACCAATTACAAACTTTCCCTCTCTATCTTCT 1561
|||||||||||||| ||||||||| ||||||| |||| ||||||| ||||||||||||
Sbjct 1351 TAAGCTTCTACGAGAAAACCCCATTAGCCACCGATTATAAACTTTTGCTCTCTATCTTC- 1293
Query 1562 CGCTTACCGTAAAAGTAAGATCAGTTCTCTGGTTCAACTCTTACTTGGCATCAAACCTGT 1621
| |||||||||||||||||||||||||| | || || ||||||||||| ||||||| ||
Sbjct 1292 CTCTTACCGTAAAAGTAAGATCAGTTCTGT-TTTTAAGTCTTACTTGGCGTCAAACCCGT 1234
Query 1622 CAATAGCTAGAACGTGAAGAGTAGTAGTAACCAGTGGAAGAGAAAAGCGGAAATGTACCG 1681
| |||||||||||||| | || |||||||||||||||||||| | ||||||||||||| |
Sbjct 1233 CCATAGCTAGAACGTG-A-AG-AGTAGTAACCAGTGGAAGAG-ACAGCGGAAATGTACTG 1178
Query 1682 CCATGTGAAAGCAGCAATCACCAGAACCATAAATTGCGGCTATCCACGGCTTTCATGGAA 1741
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1177 CCATGCAAAAGCAGCAATCACCAGAACCATAAATTGCGGCTATCCACGGCTTTCATGGAA 1118
Query 1742 GAGTATACAAGTGGCATTATCCCAAATTCTGCCACAAACCGATTTACGCAGTGTGTTCTT 1801
| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1117 GTGTATACAAGTGGCATTTTCCCAAATTCTGCCACAAACCGGTTTACGCAGTGTGTTCTT 1058
Query 1802 TTTTCTGTGTGCCCTCCTATGCTACTAATTCCAGTT 1837
||||||||||||||||||||||||||||||||||||
Sbjct 1057 TTTTCTGTGTGCCCTCCTATGCTACTAATTCCAGTT 1022
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90913186995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5