BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486028
Length=2075
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55850.2 | Symbols: LAF3, LAF3 ISF1 | Amidohydrolase family ... 2955 0.0
AT3G55860.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 182 2e-44
AT1G70185.1 | Symbols: | other RNA | chr1:26429733-26430069 FO... 172 9e-42
AT5G53740.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 93.5 8e-18
> AT3G55850.2 | Symbols: LAF3, LAF3 ISF1 | Amidohydrolase family
| chr3:20721720-20725893 REVERSE LENGTH=2183
Length=2183
Score = 2955 bits (1600), Expect = 0.0
Identities = 1764/1843 (96%), Gaps = 11/1843 (1%)
Strand=Plus/Plus
Query 235 GTTTCCGCCGCCGTCTTTCTCCTTATCTCCGTCGCGTATCTTCCTTCGCTCAACGACTTA 294
||||| || ||||| || |||||||||||||||||||||||||||| |||||||||||||
Sbjct 325 GTTTCAGCTGCCGTGTTCCTCCTTATCTCCGTCGCGTATCTTCCTTTGCTCAACGACTTA 384
Query 295 TATTGGTCAACTCTCAAGTCTCTCACACCACCGGTTGGTATCGTGGCGGATTTGTTAGTG 354
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 385 TATTGGTCAACTCTCAAGTCTCTTACACCACCGGCTGGTATCGTGGCGGATTTGTTAGTG 444
Query 355 AGGAATGGAACAATCTTCACCAGTGATAGCTCTTTGCCATTTGCAGATTCCATGGCGATT 414
| |||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 445 ACCAATGGAACAATCTTCACCAGCGATAGCTCTTTGCCTTTTGCCGATTCCATGGCGATT 504
Query 415 CGTAATGGCAGGATTCTTAAAGTTGGAAGCTTTGCCACTCTCAAGGGTTTTATAGGAGAT 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 505 CGTAATGGCAGGATTCTTAAAGTTGGAAGCTTTGCCACTCTCAAGGGTTTTATAGGAGAT 564
Query 475 GGAACTATGGAGGTGAATCTGGAGGGGAAGATTGTAGTGCCTGGACTTATTGATTCACAT 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 565 GGAACTATGGAGGTGAATCTGGAGGGGAAGATTGTAGTGCCTGGACTTATTGATTCACAT 624
Query 535 GTTCATTTGATATCTGGGGGATTACAGATGGCCCAAGTTGGACTTCGTGGAGTGAGTCAA 594
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 625 GTTCATCTGATTTCTGGGGGATTACAGATGGCCCAAGTTGGACTTCGTGGAGTGAGTCAA 684
Query 595 AAAGATGAGTTTTGTAAAATGGTGAAGGACGCAGTGCAGAATGCAAAAGAAGGCTCATGG 654
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 685 AAAGATGAGTTTTGTAAAATGGTGAAGGACGCTGTGCAGAATGCAAAAGAAGGCTCATGG 744
Query 655 ATTTTGGGTGGTGGCTGGAACAATGATTTCTGGGGAGGAGAATTGCCCTCTGCATCATGG 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 745 ATTTTGGGTGGTGGCTGGAACAATGATTTCTGGGGAGGAGAATTGCCCTCTGCATCATGG 804
Query 715 ATTGATGAAATCTCCCCTCATAATCCTGTTTGGTTGATTAGGATGGATGGTCATATGGCA 774
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 805 ATTGATGAAATCTCCCCTCGTAATCCTGTTTGGTTGATTAGGATGGATGGTCATATGGCA 864
Query 775 TTGGCAAATTCCCTTGCGCTTAGGATTGCTGGTGTTACAAGTTTAACGGAAGATCCAGTT 834
|||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||
Sbjct 865 TTGGCAAATTCCCTTGCGCTCAAGATTGCTGGTGTTATAAGTTTAACGGAAGATCCAGTT 924
Query 835 GGTGGAACGATAATGAGGATGCCTAGTGGCGAGCCGACAGGTCTTTTGATCGATGCTGCT 894
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 925 GGTGGAACGATAATGAGGATGCCTAGTGGCGAGCCGACAGGACTTTTGATCGATGCTGCT 984
Query 895 ATGGAGCTTGTCACTCCCTGGGTTAAAGAAATCTCAGTGGATGAACGTAGGGAAGCACTA 954
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 985 ATGGAGCTTGTCACCCCCTGGGTTAAAGAAATCTCAGTGGATGAACGTAGGGAAGCACTA 1044
Query 955 TTTAGAGCTAGCAAATATGCTTTAACTAGAGGCGTGACAACTGTTATTGATCTTGGAAGA 1014
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1045 TTTAGAGCTAGCAAATATGCTTTGACTAGAGGCGTGACAACTGTTATTGATCTTGGAAGA 1104
Query 1015 TACTTTCCTGGCACCACAGATGAGCTCTCCTGGAAAGACTTTCAAGATGTCTATCTATAT 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1105 TACTTTCCTGGCACCACAGATGAGCTCTCCTGGAAAGACTTTCAAGATGTCTATCTATAT 1164
Query 1075 GCTGATTCCTCGAAGAAGATGATGATACGGACTTGCTTGTTTTTTCCCATCACAACATGG 1134
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1165 GCTGATTCCTCGAAGAAGATGATGATACGGACTTGCTTGTTTTTTCCCATCACAACGTGG 1224
Query 1135 TCACGTTTATCGGATCTTAAGCTTCAGAAGGGATCTGTACTGAGTGAATGGTTGTATCTC 1194
|||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1225 TCACGTTTATTGGATCTTAAGCTGCAGAAGGGATCTGTACTGAGTGAATGGTTATATCTC 1284
Query 1195 GGTGGCGTGAAAGCATTTATTGATGGCTCTCTAGGTTCCAGCAGTGCACTTTTTTACGAG 1254
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1285 GGTGGCGTCAAAGCATTTATTGATGGCTCTCTAGGTTCCAACAGTGCACTTTTTTACGAG 1344
Query 1255 GAATATATTGATTCACCTGATAATTATGGGTTAGAAGTGATGGATCCTGAGAAACTTTCC 1314
|||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 1345 GAATATATTGATACACCTAATAATTATGGGTTAGAAGTGATGGATCCTGAAAAACTTTCC 1404
Query 1315 AACTTCACAATGGCAGCAGACAAATCAGGGCTTCAGGTTGCTATACATGCTATAGGCGAC 1374
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1405 AACTTCACAATGGCAGCAGACAAATCAGGGCTTCAGGTTGCTATCCATGCTATAGGCGAC 1464
Query 1375 AAAGCAAATGACATGATCCTTGACATGTACGAATCTGTTGCTGCAGCCAATGGAGACCGG 1434
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1465 AAAGCAAATGACATGATCCTTGACATGTACGAATCCGTTGCTGCAGCCAATGGAGACCGA 1524
Query 1435 GATAGAAGATTTAGGATAGAGCATGCCCAACATTTGGCACCAGGATCAGCCAACCGGTTT 1494
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1525 GATAGAAGATTTAGGATAGAGCATGCCCAACATTTGGCACCAGGATCAGCCAACCGGTTC 1584
Query 1495 GGTCAACTTCATATTGTAGCTTCAGTTCAGCCAGATCATTTGCTTGATGATGCTGATTCT 1554
||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1585 GGTCAACTTCACATTGTTGCTTCAGTTCAGCCAGACCATTTGCTTGATGATGCTGATTCT 1644
Query 1555 GTTGCTAGGAAGATCGGTTCTGAGAGAGCCGAAAAGGAGTCTTATCTATTCCAATCTCTC 1614
||||||| |||| |||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1645 GTTGCTAAGAAGCTCGGTTCTGAAAGAGCCGTAAAGGAGTCTTATCTATTCCAATCTCTC 1704
Query 1615 TTAAACGGCAATGCACTCTTGGCACTTGGTTCAGACTGGCCTGTTGCAGACATTAACCCG 1674
||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1705 TTAAATGGCAATGCACTCTTGGCACTTGGCTCAGACTGGCCTGTAGCAGACATTAACCCG 1764
Query 1675 TTGCATAGTATCAGAACCGCGGTTAAACGAATACCTCCCAAGTGGGATCACGCTTGGATT 1734
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1765 TTGCACAGTATCAGAACCGCGGTTAAAAGAATACCTCCCAAGTGGGATCACGCTTGGATT 1824
Query 1735 CCATCTGAACGCATCTCTTTTACCGATGCGCTGATTGCGCAGACGATATCAGCGGCACGA 1794
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1825 CCATCTGAACGCATCTCTTTTACGGATGCGCTGATTGCGCAGACGATATCAGCGGCAAGA 1884
Query 1795 GGAGCGTTTCTGGATCATCACTTGGGGTCTTTATCTCCAGGAAAACTCGCAGATTTTGTC 1854
| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1885 GCAGCGTTTTTGGATCATCACTTGGGGTCTTTATCTCCAGGAAAACTAGCAGATTTTGTC 1944
Query 1855 ATACTGTCAACAAATTCTTGGGATGAGTTCTCAAAAGACGTTTCTGCTTCAGTTTTGGCA 1914
||| ||||||||||||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct 1945 ATATTGTCAACAAATTCTTGGGATGAGTTCTCAAAAGACGTTTCTGCATCAGTGTTAGCA 2004
Query 1915 ACCTATGTAGGAGGAAAGCAATTGTATCCATGAATCAT-ATGATGGAATGGAGTATTTAA 1973
|| ||||||||||||||||||||||||||||||||||| |||||| | | ||| |||
Sbjct 2005 ACGTATGTAGGAGGAAAGCAATTGTATCCATGAATCATGATGATGCAGTCTT-TATCTAA 2063
Query 1974 TTAAGAAACAAACTTTATACACT-AGAATTATCTGATTATTTATTTGTTTGTCTATGCGT 2032
||||||||||||||||| ||||| ||| | ||||||| |||||| |||||||||| ||||
Sbjct 2064 TTAAGAAACAAACTTTACACACTTAGAGT-ATCTGATCATTTATCTGTTTGTCTAGGCGT 2122
Query 2033 TATCACTTATCAATGTACATATGTATGACATCTGGCTTATCAA 2075
||||| || |||||||||||||||||||||||||||||
Sbjct 2123 TATCA---AT----GTACATATGTATGACATCTGGCTTATCAA 2158
Score = 211 bits (114), Expect = 2e-53
Identities = 128/135 (95%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 1 TGTGGTGAGCACAAAGCGAACTATTCTTTCGCCTTTTACTAAAGAATACCGTGTGCTCTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TGTGGTGAGCACAAAGCGAACTATTCTTTCGCCTTTTACTAAAGAATACCGTGTGCTCTC 60
Query 61 CACGCTAAGTGGCATACGCCTATTTTTGGAGGGATCTCACCTAACCGTGAGACCCAACAT 120
|||||||||||||||||||||||||||||||||||||||| | || ||| ||||||||||
Sbjct 61 CACGCTAAGTGGCATACGCCTATTTTTGGAGGGATCTCACTTCACAGTGGGACCCAACAT 120
Query 121 CTGCCCTAGTCTGAA 135
| | ||||||||||
Sbjct 121 TTACACTAGTCTGAA 135
> AT3G55860.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G60660.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr3:20727591-20729618 REVERSE LENGTH=1366
Length=1366
Score = 182 bits (98), Expect = 2e-44
Identities = 110/116 (95%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 2 GTGGTGAGCACAAAGCGAACTATTCTTTCGCCTTTTACTAAAGAATACCGTGTGCTCTCC 61
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 GTGGTGAGCACAAAGCGAACTACTCTTTCGCCTTTTACTAAAGAATACCGTGTGCTCTCC 60
Query 62 ACGCTAAGTGGCATACGCCTATTTTTGGAGGGATCTCACCTAACCGTGAGACCCAA 117
|||| ||||||||||||||||||||||||||| |||||| ||| |||||||||||
Sbjct 61 ACGCCAAGTGGCATACGCCTATTTTTGGAGGGCTCTCACGTAAATGTGAGACCCAA 116
> AT1G70185.1 | Symbols: | other RNA | chr1:26429733-26430069
FORWARD LENGTH=337
Length=337
Score = 172 bits (93), Expect = 9e-42
Identities = 93/93 (100%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 1 TGTGGTGAGCACAAAGCGAACTATTCTTTCGCCTTTTACTAAAGAATACCGTGTGCTCTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 10 TGTGGTGAGCACAAAGCGAACTATTCTTTCGCCTTTTACTAAAGAATACCGTGTGCTCTC 69
Query 61 CACGCTAAGTGGCATACGCCTATTTTTGGAGGG 93
|||||||||||||||||||||||||||||||||
Sbjct 70 CACGCTAAGTGGCATACGCCTATTTTTGGAGGG 102
> AT5G53740.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: synergid; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT5G53905.1);
Has 1807 Blast hits to 1807 proteins in 277 species:
Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347;
Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source:
NCBI BLink). | chr5:21811633-21814908 FORWARD LENGTH=828
Length=828
Score = 93.5 bits (50), Expect = 8e-18
Identities = 75/87 (86%), Gaps = 1/87 (1%)
Strand=Plus/Minus
Query 5 GTGAGCACAAAGCGAACTATTCTTTCGCCTTTTACTAAAGAATACCGTGTGCTCTCCAC- 63
||||| || |||||||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 306 GTGAGGGCATAGCGAACTATTCTTTCGCCTTTTACTAAAGAATATCGTGTTCTCTCTGCT 247
Query 64 GCTAAGTGGCATACGCCTATTTTTGGA 90
||| ||||||||||||||||||||
Sbjct 246 TTTAAACGGCATACGCCTATTTTTGGA 220
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102860916705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5