BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486031
Length=1137
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55880.2 | Symbols: | Alpha/beta hydrolase related protein ... 1550 0.0
> AT3G55880.2 | Symbols: | Alpha/beta hydrolase related protein
| chr3:20736571-20738913 FORWARD LENGTH=1167
Length=1167
Score = 1550 bits (839), Expect = 0.0
Identities = 1074/1178 (91%), Gaps = 54/1178 (5%)
Strand=Plus/Plus
Query 1 AAAATAAGTCTCCGCaaaaaaaCTTCTCTCTCCAGAAACCAAATCACACTTACATCACAA 60
|||||||||||| | ||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 2 AAAATAAGTCTCTACCAAAAAACCTCTCTCTCCAGAAACCAAATCACACTTACATCATAA 61
Query 61 ATCCTCTGTACATAACCaaaaaaaaaaaaCCCTAGAAAAGAAGAAAAATCAAGATGGGTC 120
||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||
Sbjct 62 ATCCTCTGTACATAACC---CAAAAAAAACCCTAGAAACGAAGAAAGATCAAGATGGGTT 118
Query 121 TGATCAGCAAAGAAGAGATTAGCAAAACAAGAAGATATTCATCTTCTCTTTGGAGAGGAA 180
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 119 TGATTAGCAAAGAAGAGATAAGCAAAACAAGAAGATATTCATCTTCTCTTTGGAGAGGTA 178
Query 181 TCAAAACGATCTTTGTTCTCTTCACTATGTTTCTCTCTTTTATCATCTTCTCTGCTCCGA 240
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 179 TCAAAACGATCTTTGTTCTCTTCACTATGTTTCTCTCTTTCATCATCTTTTCTGCTCCGA 238
Query 241 TCTTCCTCGCCGTCGCCGACGCCGtcctcccctccgcaatcctctcctcctcctc-ctcc 299
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||
Sbjct 239 TCTTCCTCGCCGTCGCCGACGCCGTCCTCCCCTCCGCAATCCTCTCATCCTCCTCAC-CC 297
Query 300 tccctcaaccgcctttctcc-tcATAGTTTCCCGGCGACGATTTATTCTTATCTCAGCAA 358
|||||||||||||| ||||| || |||||| |||||||||||||||||||| ||||| ||
Sbjct 298 TCCCTCAACCGCCTATCTCCTTC-TAGTTTTCCGGCGACGATTTATTCTTACCTCAGTAA 356
Query 359 CTACGATTTCAGATACTCTCTCATCGATATACCTCTCATCTCCATCACTAGATCTGCCAT 418
|||||||||| | |||||||||||||| ||||||||||||||||| | ||||||||||||
Sbjct 357 CTACGATTTCCGTTACTCTCTCATCGACATACCTCTCATCTCCATAATTAGATCTGCCAT 416
Query 419 TATACTATGCGTTTACGGGCTTTGTGACGGGCCAAAGTTATCAAGGGGACCATATCTGAC 478
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 417 TATACTATGCGTTTACGGGCTTTGTGACGGACCAAAGTTATCAAGGGGACCATATCTGAC 476
Query 479 AATAACGATGGTATGCTCGATATCTTCATTAATATACGTATCGTTTAAGGCAGCGGTTGT 538
|||||||||| ||||||||||||||||| | |||||||||||||| |||||||| ||||
Sbjct 477 AATAACGATGATATGCTCGATATCTTCACTGATATACGTATCGTTCAAGGCAGCAATTGT 536
Query 539 GTTCGGAGAGCCAGTGATCGGAGGATATTTCCGAACAGAGGAAATGGCTCTCTTTGTATG 598
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 537 ATTCGGAGAGCCAGTGATCGGAGGATATTTCCGAACAGAGGAAATGGCTCTCTTTCTATG 596
Query 599 TTCTTGGATCTTAGCCATCGGTCACATCGTTGTGGCGTACCGTACAAGTTGTAGAGAGAG 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TTCTTGGATCTTAGCCATCGGTCACATCGTTGTGGCGTACCGTACAAGTTGTAGAGAGAG 656
Query 659 AAGAAAGCTCCTAGTCTTCAAAATCGACATCGAATCCGTTTCAGCTTGTAAAAATGTGTT 718
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 ACGAAAGCTCCTAGTCTTCAAAATCGACATCGAATCCGTTTCAGCTTGTAAAAATGTGTT 716
Query 719 TCCCCGATACCAAAAAATCCTCCAACAAGAGAGACTCAAATAGCTA---ATAT---A--T 770
|||| |||| |||||||||||||||||||||||||||||||||||| |||| | |
Sbjct 717 TCCCAGATATCAAAAAATCCTCCAACAAGAGAGACTCAAATAGCTAGCTATATTCGAAGT 776
Query 771 -A--C-T----T--ACA-ATA--C--A-AG--CTA-C-A--TGTATATAAATATACGTAT 808
| | | | ||| ||| | | || | | | | |||||||||||||||||||
Sbjct 777 CAATCGTCACATGTACATATATACTTACAGTACAAGCTACATGTATATAAATATACGTAT 836
Query 809 CAATGCAAG-TGATAATGTTGTTTATTGTGTG-TTT--TGGTTAC-AGAAAGGTCCAAAG 863
| |||||| | || || |||| | || | ||| || || | ||||| ||||||||
Sbjct 837 CTATGCAACATC-TACTGG-GTTT-TGGTCTCCTTTCATG-TT-CGAGAAAAGTCCAAAG 891
Query 864 GATATAATCTGTAAAGGAGGAAGGAACAGATAACGAATGGGGCTTAATATATA-A-CCTA 921
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 892 GATATAATCTGTAAAGGAGGAAGGAACAGATAACGAATGGGGCTTAATATATATAACCTA 951
Query 922 TGCTTTTCCATGTGAGACTACACAAGACAACTCCAATGAATTGGCAGTTGTTACTATATT 981
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 952 TGCTTTTCCATGTGAGACTACAAAAGACAACTCCAATGAATTGGCAGTTGTTACTATACT 1011
Query 982 ATAGATTTTAAATTTAGGTATAGACACACAA-AAAAG-AAGAACATTATATTAGTTCTTC 1039
|||||||||||||| ||||||||||||| || ||||| |||||||||||| |||||||||
Sbjct 1012 ATAGATTTTAAATT-AGGTATAGACACA-AAGAAAAGGAAGAACATTATACTAGTTCTTC 1069
Query 1040 TTATAAATGATCCACCGTTACACTTTTGTCCTTTTTGTTTGTTTGTATAAAACCATATTT 1099
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1070 TTACAAATGATCCACCGTTACACTTTTGTCCTTTTTGTTTGTTTGTATAAA-CCATATTT 1128
Query 1100 TCATCAATGAGATAAGAAGCCGAAGGCATCTTTCTTCC 1137
||||||||||||||||||||||||||||||||||||||
Sbjct 1129 TCATCAATGAGATAAGAAGCCGAAGGCATCTTTCTTCC 1166
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55772805495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5