BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486038
Length=2000
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55980.1 | Symbols: SZF1, ATSZF1 | salt-inducible zinc finge... 3068 0.0
AT2G40140.1 | Symbols: CZF1, ZFAR1, SZF2, ATSZF2 | zinc finger ... 782 0.0
> AT3G55980.1 | Symbols: SZF1, ATSZF1 | salt-inducible zinc finger
1 | chr3:20776295-20778842 FORWARD LENGTH=2153
Length=2153
Score = 3068 bits (1661), Expect = 0.0
Identities = 1896/2006 (95%), Gaps = 29/2006 (1%)
Strand=Plus/Plus
Query 1 CACCTTTTAAAGAATCCTCTCCTCACAACTCCATTCTTCTTTaaaaaaaCC-CCA-AACA 58
||||||||||||||| | |||||||| |||||||||||| |||||||| || ||| ||||
Sbjct 27 CACCTTTTAAAGAAT-C-CTCCTCAC-ACTCCATTCTTC-TTAAAAAACCCACCACAACA 82
Query 59 CATTTCCCACTTGTTTCTTC--CATCA---A----AAT-----AGC-TTCCAACTTTCTT 103
|| ||||||||||||||||| ||||| | ||| | | |||||||||||||
Sbjct 83 CAATTCCCACTTGTTTCTTCATCATCACCTACTTCAATCAAAAAACATTCCAACTTTCTT 142
Query 104 CTCAATTTCATTTCAGGATAATATTATGTGCAGTGGACCAAAGAGCAATCTCTGCTCTTC 163
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 143 CTCAATTTCATTCCAGGATAGTATTATGTGCAGTGGACCAAAGAGCAATCTCTGCTCTTC 202
Query 164 AAGAACCTTAACAGAAATCGAATCAAGGCAAAAGGAAGAAGAAACAATGGTTCTCCTCGA 223
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 203 AAGAACCTTAACAGAAATCGAATCAAGGCAAAAGGAAGAAGAAACAATGCTTCTCCTCGA 262
Query 224 ATTCGCCGCTTGTGATGATCTTGACTCGTTCAAGAGAGAGGTTGAAGAGAAGGGGCTTGA 283
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 263 ATTCGCTGCTTGTGATGATCTTGACTCGTTCAAGAGAGAGGTTGAAGAGAAAGGGCTTGA 322
Query 284 TCTGGATGAGCCAGGGTTATGGTATTGCAGACGGGTCGGGTCTAAGAAGATGGGTTTTGA 343
| |||||||| |||||||||||||||||||||| ||||| ||||||||||||||| ||||
Sbjct 323 TTTGGATGAGTCAGGGTTATGGTATTGCAGACGTGTCGGTTCTAAGAAGATGGGTCTTGA 382
Query 344 AGAAAGAACACCTCTAATGGTTGCAGCTATGTATGGAAGCATAAAGGTTTTGACTTTCAT 403
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 383 AGAAAGAACACCTTTAATGGTTGCAGCTATGTATGGAAGCATAAAGGTTTTGACTTTCAT 442
Query 404 CATTTCCACTGGAAAATCTGATGTGAACAGAGCTTGTGGTGAAGAGAGAGTCACTGCGCT 463
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 443 CGTTTCCACTGGAAAATCTGATGTGAACAGAGCTTGTGGTGAAGAGAGAGTTACTCCGCT 502
Query 464 TCACTGTGCTGTTGCTGGTTGTTCTGTGAATATGATTGAAGTCATCACTGTCTTGCTTGA 523
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 503 TCACTGTGCTGTTGCTGGCTGTTCTGTGAATATGATTGAAGTCATCAATGTCTTGCTTGA 562
Query 524 TGCTTCTGCTTTGGTTAACTCTGTTGATGCTAATGGGAATCAACCTTTGGATGTGTTTGT 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 563 TGCTTCTGCTTTGGTTAACTCTGTTGATGCTAATGGGAATCAACCTTTGGATGTGTTTGT 622
Query 584 TCGGGTTTCGAGATTCGTGGCTAGTCCGAGGAGGAAGGCGGTTGAGTTGTTGCTGAGAGG 643
||| |||||||| || |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 623 TCGAGTTTCGAGGTTTGTGGCTAGTCCGAGGAGGAAAGCGGTTGAGTTGTTGCTGAGAGG 682
Query 644 AGGCGGTGTTAGCGGATTGGTCGACGAGGCGGTTGAAGAAGAGATCAAGATCGTGTCTAA 703
||| |||||| | |||||| |||| |||||||||||||||||||||||||| || |||||
Sbjct 683 AGGAGGTGTTGGAGGATTGATCGATGAGGCGGTTGAAGAAGAGATCAAGATTGTCTCTAA 742
Query 704 GTATCCGGCCGATGCTTCTTTACCGGATATTAATGAAGGGGTTTATGGAAGTGATGAGTT 763
|||||| || |||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 743 GTATCCAGCTGATGCTTCTTTACCGGATATAAACGAAGGGGTTTATGGAAGTGATGAGTT 802
Query 764 TAGGATGTATAGCTTTAAGGTTAAGCCATGTTCGAGGGCTTATTCGCACGATTGGACCGA 823
||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 803 TAGGATGTATAGCTTTAAGGTTAAGCCATGTTCTAGGGCTTATTCTCATGATTGGACCGA 862
Query 824 GTGTGCTTTTGTTCATCCGGGAGAGAACGCGAGGAGGAGAGATCCGAGGAAGTATCCTTA 883
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 863 GTGTGCTTTTGTTCATCCGGGAGAAAATGCGAGGAGGAGAGATCCGAGGAAGTATCCTTA 922
Query 884 CACTTGTGTCCCCTGTCCCGAGTTCCGTAAAGGGTCATGCCCGAAAGGAGATTCTTGCGA 943
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 923 CACTTGTGTCCCCTGTCCCGAGTTCCGTAAAGGATCATGCCCGAAAGGAGATTCTTGCGA 982
Query 944 GTATGCTCACGGGGTTTTCGAGTCGTGGCTTCACCCGGCGCAGTATAAAACCCGGCTTTG 1003
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 983 GTATGCTCACGGGGTTTTCGAGTCGTGGCTTCACCCCGCGCAGTATAAAACCCGGCTTTG 1042
Query 1004 TAAAGATGAGACGGGTTGTGCAAGGAAAGTTTGTTTCTTTGCGCATAAACGTGAAGAGAT 1063
||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1043 TAAAGATGAAACGGGTTGTGCAAGGAAAGTTTGTTTCTTTGCTCATAAACGCGAAGAGAT 1102
Query 1064 GAGACCTGTTAATGCATCAACTGGCTCTGCCGTGGCTCAGTCTCCGTTTAGCAGCTTAGA 1123
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1103 GAGACCTGTTAATGCTTCAACTGGCTCTGCCGTGGCTCAGTCTCCGTTTAGCAGCTTGGA 1162
Query 1124 GATGATGCCCGGGTTGTCTCCTCTTGCATATTCTTCAGGAGTTTCGACTCCTCCGGTTTC 1183
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1163 GATGATGCCAGGGTTGTCTCCTCTTGCTTATTCTTCAGGAGTTTCGACTCCTCCGGTTTC 1222
Query 1184 TCCAATGGCTAATGGTGTTCCTTCCTCTCCAAGAAACGGCGGATCATGGCAGAACAGAGT 1243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1223 TCCAATGGCTAATGGTGTTCCTTCCTCTCCAAGAAACGGCGGATCATGGCAGAACAGAGT 1282
Query 1244 CAATACCCTTACTCCCCCGGCTTTGCAGCTCAATGGTGGAAGCAGATTGAAGTCGACATT 1303
||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1283 CAATACCCTTACTCCACCGGCTTTGCAGCTCAATGGTGGAAGCAGATTGAAGTCCACACT 1342
Query 1304 GAGTGCTAGAGATATCGATATGGAGATGGAGATGGAACTGAGACTCCGCGGTTTTGGCAA 1363
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1343 GAGCGCTAGAGATATCGATATGGAGATGGAGATGGAATTGAGACTCCGCGGTTTTGGCAA 1402
Query 1364 CAATGTCGAAGAGACGTTCGGATCTTATGTTTCCTCTCCAGGTAGGAATTCTCAGATGGG 1423
|||||| |||||||||||||| |||||||||||||||||| ||||||||||||| |||||
Sbjct 1403 CAATGTGGAAGAGACGTTCGGGTCTTATGTTTCCTCTCCAAGTAGGAATTCTCAAATGGG 1462
Query 1424 TCAAAACATGAACCAACATTATCCGTCTTCCCCGGTGAGGCAACCGCCATCTCACCACGG 1483
|||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||
Sbjct 1463 TCAAAACATGAACCAACATTATCCATCTTCCCCGGTGAGACAACCGCCATCTCAACACGG 1522
Query 1484 GTTCGAATCTTCAGCAGCTGCAGCGGTTGCAGTGATGAAAGCAAGATCATCCGCTTTTGC 1543
|||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||
Sbjct 1523 GTTCGAATCTTCAGCAGCTGCAGCGGTTGCAGTGATGAAAGCGAGATCAACCGCCTTTGC 1582
Query 1544 GAAACGTAGCTTGAGTTTCAAACCGGCTACTCAAGCAGCACCGCAGTCGAATCTCTCGGA 1603
||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1583 GAAACGTAGCTTGAGCTTCAAACCAGCTACTCAAGCAGCACCACAGTCGAATCTCTCGGA 1642
Query 1604 TTGGGGATCTCCAAACGGGAAGCTCGAATGGGGAATGAAAGGAGAAGAGCTGAATAAGAT 1663
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1643 TTGGGGATCTCCAAACGGGAAGCTGGAATGGGGAATGAAAGGAGAAGAGCTGAATAAGAT 1702
Query 1664 GAGAAGAAGCGTTTCCTTTGGAATCCATGGAAACAACAACAATAACGCAGCTAGAGATTA 1723
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1703 GAGAAGAAGTGTTTCCTTTGGAATCCATGGAAACAACAACAATAACGCAGCTAGAGACTA 1762
Query 1724 CAGGGACGAGCCAGATGTGTCATGGGTTAACTCTTTGGTTAAAGACAGT---GTGGTGTC 1780
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1763 CAGGGACGAGCCAGATGTGTCATGGGTTAACTCTTTAGTTAAAGACAGTACTGTGGTGTC 1822
Query 1781 TGAGAGAAGCTTTGGAATGAACGAGAGGGTTCGGATAATGTCGTGGGCTGAGCAAATGTA 1840
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1823 TGAGAGAAGCTTTGGAATGAATGAGAGGGTTCGGATAATGTCGTGGGCTGAGCAAATGTA 1882
Query 1841 CAGAGAGAAGGAGCAGACTGTGGCATAAACACACAAAAATATGGTTT-T-ATAGAT-T-G 1896
||||||||||||||||||||||| |||||||||| ||| ||||||| | ||| || | |
Sbjct 1883 CAGAGAGAAGGAGCAGACTGTGGTGTAAACACACACAAAGATGGTTTCTTATATATATTG 1942
Query 1897 CTTTTGTGCCATCTCCGCAAATTTAATTCTTTAATTTTTGTCACTTTCTTTAGTTGTTAG 1956
|||||| |||||||| |||||||| |||||||||||||||| |||||||||||||||||
Sbjct 1943 CTTTTGGGCCATCTCTGCAAATTTGATTCTTTAATTTTTGTGACTTTCTTTAGTTGTTA- 2001
Query 1957 CGGTTATTAGTAGTATATGGTTTGTT 1982
| ||||||||||||||||||||||||
Sbjct 2002 CTGTTATTAGTAGTATATGGTTTGTT 2027
> AT2G40140.1 | Symbols: CZF1, ZFAR1, SZF2, ATSZF2 | zinc finger
(CCCH-type) family protein | chr2:16772073-16774657 FORWARD
LENGTH=2310
Length=2310
Score = 782 bits (423), Expect = 0.0
Identities = 990/1251 (79%), Gaps = 90/1251 (7%)
Strand=Plus/Plus
Query 128 TATGTGCAGTGGACCAAAGAGCAATCTCTGCTCTTC-AAGAACCTTAACAGAAATCGAA- 185
||||||| || | |||||||||| || ||||| || || |||| |||||||| |||||
Sbjct 189 TATGTGCGGT-G--CAAAGAGCAACCTTTGCTCATCTAA-AACCCTAACAGAAGTCGAAT 244
Query 186 TCA--AGGCA-AAA--GGAAGAAGAAACAAT--G----GT-TCTCCTCGAATTCGCCGCT 233
||| ||||| ||| ||||| | | | | | || ||||||||||||||||||
Sbjct 245 TCATGAGGCAGAAATCAGAAGACGGAGC-TTCCGCCACGTGTCTCCTCGAATTCGCCGCC 303
Query 234 TGTGATGATC-TTGACTCGTTCAAGAGAGAGGTTGAAGAG-A---AGGGGCTTGATCTGG 288
|||||||||| || | ||||| ||||||||| | |||||| | | || | || | |
Sbjct 304 TGTGATGATCTTTCA-TCGTTTAAGAGAGAGATCGAAGAGAATCCATCGG-TGGAGATTG 361
Query 289 ATGAGCCAGGGTTATGGTATTGCAGACGGGTCGGGTCTAAGAAGATGGGTTTTGAAGAAA 348
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 ATGAGTCAGGGTTTTGGTATTGCAGACGGGTCGGGTCTAAGAAGATGGGTTTTGAAGAAA 421
Query 349 GAACACCTCTAATGGTTGCAGCTATGTATGGAAGCATA-AAGGTTTTGACTTTCATCATT 407
||||||| || |||||||| ||||||||||||||||| ||| | |||| || ||| |||
Sbjct 422 GAACACCACTTATGGTTGCTGCTATGTATGGAAGCATGGAAG-TGTTGAATTACATAATT 480
Query 408 TCCACTGGAAAATCTGATGTGAACAGAGCTTGTGGTGAAGAGAGAGTCACTGCGCTTCAC 467
|||| |||| ||| ||||||||||||| ||| |||| |||| ||||||||| ||||||
Sbjct 481 GCCACAGGAAGATCCGATGTGAACAGAGTTTGCAGTGACGAGAAAGTCACTGCTCTTCAC 540
Query 468 TGTGCTGTTGCTGGTTGTTCTGTGAATAT-GATTGA-AGTCATCACTG-TCTTGCTTGAT 524
||||| ||| |||| |||||||| ||| | |||| | |||||| | |||||||||||
Sbjct 541 TGTGCAGTTTCTGGCTGTTCTGTTTCTATCG-TTGAGA-TCATCAA-GATCTTGCTTGAT 597
Query 525 GCTTCTGCTTTGGTTAACTCTGTTGATGCTAATGGGAATCAA-CCT-TTGGATGTGTTTG 582
|||||||||| ||| | |||||| ||||||||||| ||| || ||| || |||| |
Sbjct 598 GCTTCTGCTTCACCTAATTGTGTTGACGCTAATGGGAA-CAAACCGGTTG-ATTTGTTGG 655
Query 583 TTCGGG-TT-TCGAGATTCGTGGCTAGTCC-GAGGAGGAAGGCGGTTGAG-TTGTTGCTG 638
| | || ||| | || || ||| || ||| || |||||||||||| || || |||
Sbjct 656 CTAAAGATTCTCG-GTTT-GTTCCTAA-CCAGAGTAGAAAGGCGGTTGAGGTT-TTACTG 711
Query 639 AGAGG-AGGCGGTG-TTAGCGGAT-TGGTCGACGAGGCGGTTGAA--GAAGAGATCAAGA 693
| || | | || || ||| | ||| || |||| || ||| |||||| | |
Sbjct 712 ACCGGGATTCA-TGGTT--CGGTTATGGAAGAAGAGGAGGAGGAACTGAAGAG-T---GT 764
Query 694 TCGTGTCTAAGTATCCGGCCGATGCTTCT-TTACCGGATATTAATGAAGGGGTTTATGGA 752
| ||| |||||||||| || ||||| || || || |||||||| ||||| |||||||||
Sbjct 765 T-GTGACTAAGTATCCAGCTGATGCATCACTT-CCTGATATTAACGAAGGTGTTTATGGA 822
Query 753 AGTGATGAGTTTAGGATGTATAGCTTTAAGGTTAAGCCATGTTCGAGGGCTTATTCGCAC 812
| |||||| |||||||||| |||||||||||||||||||||||| ||||||||||| ||
Sbjct 823 ACTGATGATTTTAGGATGTTTAGCTTTAAGGTTAAGCCATGTTCTAGGGCTTATTCACAT 882
Query 813 GATTGGACCGAGTGTGCTTTTGTTCATCCGGGAGAGAACGCGAGGAGGAGAGATCCGAGG 872
|||||||| || ||| ||||||||||||| || ||||| || |||||||||||||| |||
Sbjct 883 GATTGGACTGAATGTCCTTTTGTTCATCCTGGTGAGAATGCAAGGAGGAGAGATCCTAGG 942
Query 873 AAGTATCCTTACACTTGTGTCCCCTGTCCCGAGTTCCGTAAAGGGTCATGCCCGAAAGGA 932
|||||||||||||||||||| || ||||||||||| ||||||||||| || || ||||||
Sbjct 943 AAGTATCCTTACACTTGTGTGCCTTGTCCCGAGTTTCGTAAAGGGTCTTGTCCTAAAGGA 1002
Query 933 GATTCTTGCGAGTATGCTCACGGGGTTTTCGAGTCGTGGCTTCACCCGGCGCAGTATAAA 992
||||| || ||||| || ||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1003 GATTCGTGTGAGTACGCGCACGGTGTTTTCGAGTCTTGGCTTCACCCGGCGCAGTATAGG 1062
Query 993 ACCCGGCTTTGTAAAGATGAGACGGGTTGTGCAAGGAAAGTTTGTTTCTTTGCGCATAAA 1052
|| |||||||| ||||||||||| |||||||| |||| ||||||||||||||| |||| |
Sbjct 1063 ACACGGCTTTGCAAAGATGAGACTGGTTGTGCTAGGAGAGTTTGTTTCTTTGCTCATAGA 1122
Query 1053 CGTGAAGAGATGAGACCTGTTAATGCATCAACTGGCTCTGCCGTGGCT-CAGTCTCCGT- 1110
|| || ||| | ||||| |||||||| || ||||| ||||| ||| | || | ||
Sbjct 1123 CGGGATGAGTTAAGACCGGTTAATGCTTCTACTGGTTCTGCAATGGTTTCAC-CAAGGTC 1181
Query 1111 -T-TAG-CAG-CT--TAGAGATGATGCCCGGGT-TGTCTCCTCTTGCATATTCTTCAGGA 1163
| || ||| || | |||||| | | | | |||||||| ||| | || |||
Sbjct 1182 GTCTAATCAGTCTCCT-GAGATG-T-CT-GT-TATGTCTCCT-TTG-ACG--CTG--GGA 1230
Query 1164 GTT-TCGACTCCTCCGGTTTCTCCAATGGCTAATGGTGTTCCTTCCTCTCCAAGAAACGG 1222
| ||| | | | ||||| ||||||||||||||||||| ||||||||||| ||
Sbjct 1231 -TCATCGCCAA-T--GAACTCTCCTATGGCTAATGGTGTTCCTTTGTCTCCAAGAAATGG 1286
Query 1223 CGGATCATGGCAGAACAGAGTCAATACCCTTACTCCCCCGGCTTTGCAGCTCAATGGTGG 1282
|| | ||||||||||||||| |||| |||||| || || | |||||||| ||||||
Sbjct 1287 TGGTTTATGGCAGAACAGAGTTAATAGCCTTACACCACCACCGTTGCAGCTTAATGGT-- 1344
Query 1283 AAGCAGATTGAAGTCGACATTGAGTGCTAGAGATATCGATATGGAGATGGA 1333
| |||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1345 A-GCAGATTGAAGTCGACTTTGAGTGCTAGAGATATGGATATGGAGATGGA 1394
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99095875830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5