BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486042
Length=1165
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56030.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1646 0.0
> AT3G56030.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:20791249-20792532 FORWARD LENGTH=1284
Length=1284
Score = 1646 bits (891), Expect = 0.0
Identities = 1084/1176 (92%), Gaps = 17/1176 (1%)
Strand=Plus/Plus
Query 1 GACGATGTCTCTTCTCCGGCGATTCGTTAAAGAAGCGAACAATTCCAGATTCCTCCTTCA 60
|||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||
Sbjct 52 GACGATGTCTCTTCTCCGACGATTCGTTAAAGAAGCGAACAATTCCAGATTTCTGCTTCA 111
Query 61 ATCGATCTCGAGACGTTCATTCTCCACCGTAAATCCCAATCCAACTGCTTCACCTGGTCG 120
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 112 ATCAATCTCGGGACGTTCATTCTCCACCGTAAATCCCAATCCAACTGCTTCACCTGGTCG 171
Query 121 TCGTACTTGCGTCGAATTCGATCACCTCATCTACGAAGCCGGAAACTCCGGCGACTTCGA 180
|||||||||||||||||||||| ||||||||| | ||||||||| ||||||||| |||||
Sbjct 172 TCGTACTTGCGTCGAATTCGATAACCTCATCTTCAAAGCCGGAAGCTCCGGCGATTTCGA 231
Query 181 AGCCGTACGTCGTCTTCTCAACAGCCGCGTTGTTAACGCGTGTTTCAACACGACCGCAAC 240
||||||||||||||| |||||||||||||| || |||||||||||||||||||| || ||
Sbjct 232 AGCCGTACGTCGTCTCCTCAACAGCCGCGTCGTAAACGCGTGTTTCAACACGACAGCTAC 291
Query 241 ATTCAAATTCCTAACAAACACAGACTCTTACTCTTCCTCCTTAGAAGATCTCCGCCGCAT 300
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 292 TTTCAAATTCCTAACAAACACAGACTCTTACTCCTCCTCCTTAGAAGATCTCCGCCGTAT 351
Query 301 TTTACCTCAGACCGACGCCGGATACACTCGGAAACACGCCTACGAAACTCTCATCGCTCG 360
||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 352 TTTGCCTCAGACCGACGCCGGCTACACTCGGAAACACTCCTACGAAACTCTCATCGCTCG 411
Query 361 TCTCTGCAAACTCGGCCGGATCGACGACGCTCTGGTCTTGATCAACGATATGGCAATCGG 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 412 TCTCTGCAAACTCGGCCGGATCGACGACGCTCTGGTCTTGATCAACGATATGGCGATCGG 471
Query 421 AAAATTCGAACTCTCAACCTCCATATTTCACCCGATCTTAAACACGCTCACGAAGAAGAA 480
| |||||| ||||||||||| | ||||||| |||||||||||||||||||||||||||||
Sbjct 472 AGAATTCGGACTCTCAACCTGCGTATTTCATCCGATCTTAAACACGCTCACGAAGAAGAA 531
Query 481 CA-AGTTCGAAGAAGCTTGGCGCGTGGCGGAATTGATGAGATCTCACGCGATTCCGATGG 539
|| | | |||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 532 CAGAAT-CGAAGAAGCTTGGCGCGTGGTGGAATTGATGAGATCTCACGCGATTCCGGTGG 590
Query 540 ACGTGACGTCATATAACTACTTTTTAACTTCGCATTGTTACGACGGTGACGTGGCGGAGG 599
||||||| ||||| || || ||||||||||||||||||||||||||||||||||||||||
Sbjct 591 ACGTGACTTCATACAATTATTTTTTAACTTCGCATTGTTACGACGGTGACGTGGCGGAGG 650
Query 600 CGAGCAAGGTGTTGAGGAAGATGGA--A-GAGGAGG--G-AGTTATGTCGCCGGACACGC 653
|||||| |||||||||||||||||| | ||||||| | |||||||||||| |||||||
Sbjct 651 CGAGCAGGGTGTTGAGGAAGATGGAGGAAGAGGAGGAAGGAGTTATGTCGCCAGACACGC 710
Query 654 GTACTTACGACGCGCTTGTGTTAGGCGCGTGTAAATCAGGGA-ATGTTGAAGCGGCGATG 712
|||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||
Sbjct 711 GTACTTACGACGCGCTTGTGTTAGGCGCGTGTAAGTCAGGGAGA-GTTGAAGCGGCGATG 769
Query 713 GTGATTCTGAGGAGGATGGAGGAAGAAGGGTTATCGGTATTGTACGCCACTCATGCGTAC 772
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 770 GCGATTCTGAGGAGGATGGAGGAAGAAGGGTTATCGGTATTGTACGCCACGCATGCGCAC 829
Query 773 GTTATTGGAGAGTTGCTGGAGAGTGGCTATTATGCGCTGTCTGTGGAATTTGTGATGGCG 832
||||| ||||| || |||||||||||||||||||||| |||||| ||||||||||||
Sbjct 830 GTTATAGGAGAAATGGTGGAGAGTGGCTATTATGCGCTAAGTGTGGAGTTTGTGATGGCG 889
Query 833 TACGCCGGAAAAGATAAGAAATTAGATGAAGAGAATTTGGGAAGTTTAGCTAGTAAGCTT 892
||||| || |||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 890 TACGCGGGGAAAGATAAGAGATTAGATGAAGAGAATTTGGGAAGTTTGGCTAGTAAGCTT 949
Query 893 ATTAAGAGGAAGAGGTTTAAAGATGCTAAGTTGGTTTTGAAGGAGATGAGTGTTAGAGGA 952
|| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 950 ATCAAGAGGAAGAGGTTTAAAGAAGCTAAGATGGTTTTGAAGGAGATGAGTGTTAGAGGA 1009
Query 953 TTGAGAATGGGAAATGCTTTATGTGAATTTCATGATACCAATGTGTTAAAATCATGATTT 1012
||||||||||| ||||||| ||||||||||||| | ||||||||| |||||||||||
Sbjct 1010 TTGAGAATGGGTGATGCTTTGCGTGAATTTCATGAGAAAAATGTGTTACAATCATGATTT 1069
Query 1013 TGATCCTAAGAAGGAGAATCACCATTGTTACAAAGAGATAAAAATCAACTTTGAAGGAGG 1072
|||| ||||||| |||| |||||||||||||| || |||||||| ||||||||||||||
Sbjct 1070 TGATTCTAAGAATGAGA-TCACCATTGTTACA--GACATAAAAATGAACTTTGAAGGAGG 1126
Query 1073 TTAGTGTAAAACAGTTAGCTTCTCTGCGAttttttt---CACATGCAGTGTTTGTTGGTT 1129
| |||||||| ||||||||||||||||| ||||||| ||||||||| |||| || |||
Sbjct 1127 TAAGTGTAAA-CAGTTAGCTTCTCTGCGTTTTTTTTTTTCACATGCAGAGTTTTTTTGTT 1185
Query 1130 TCCAATAAGAATGTATTGACTCGTGGCTTCAAGTTC 1165
|||| ||||||||| |||||| ||||||||||||||
Sbjct 1186 TCCATTAAGAATGTTTTGACTTGTGGCTTCAAGTTC 1221
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57178420755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5