BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg486042 Length=1165 Score E Sequences producing significant alignments: (Bits) Value AT3G56030.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1646 0.0 > AT3G56030.1 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:20791249-20792532 FORWARD LENGTH=1284 Length=1284 Score = 1646 bits (891), Expect = 0.0 Identities = 1084/1176 (92%), Gaps = 17/1176 (1%) Strand=Plus/Plus Query 1 GACGATGTCTCTTCTCCGGCGATTCGTTAAAGAAGCGAACAATTCCAGATTCCTCCTTCA 60 |||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| Sbjct 52 GACGATGTCTCTTCTCCGACGATTCGTTAAAGAAGCGAACAATTCCAGATTTCTGCTTCA 111 Query 61 ATCGATCTCGAGACGTTCATTCTCCACCGTAAATCCCAATCCAACTGCTTCACCTGGTCG 120 ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 112 ATCAATCTCGGGACGTTCATTCTCCACCGTAAATCCCAATCCAACTGCTTCACCTGGTCG 171 Query 121 TCGTACTTGCGTCGAATTCGATCACCTCATCTACGAAGCCGGAAACTCCGGCGACTTCGA 180 |||||||||||||||||||||| ||||||||| | ||||||||| ||||||||| ||||| Sbjct 172 TCGTACTTGCGTCGAATTCGATAACCTCATCTTCAAAGCCGGAAGCTCCGGCGATTTCGA 231 Query 181 AGCCGTACGTCGTCTTCTCAACAGCCGCGTTGTTAACGCGTGTTTCAACACGACCGCAAC 240 ||||||||||||||| |||||||||||||| || |||||||||||||||||||| || || Sbjct 232 AGCCGTACGTCGTCTCCTCAACAGCCGCGTCGTAAACGCGTGTTTCAACACGACAGCTAC 291 Query 241 ATTCAAATTCCTAACAAACACAGACTCTTACTCTTCCTCCTTAGAAGATCTCCGCCGCAT 300 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 292 TTTCAAATTCCTAACAAACACAGACTCTTACTCCTCCTCCTTAGAAGATCTCCGCCGTAT 351 Query 301 TTTACCTCAGACCGACGCCGGATACACTCGGAAACACGCCTACGAAACTCTCATCGCTCG 360 ||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| Sbjct 352 TTTGCCTCAGACCGACGCCGGCTACACTCGGAAACACTCCTACGAAACTCTCATCGCTCG 411 Query 361 TCTCTGCAAACTCGGCCGGATCGACGACGCTCTGGTCTTGATCAACGATATGGCAATCGG 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 412 TCTCTGCAAACTCGGCCGGATCGACGACGCTCTGGTCTTGATCAACGATATGGCGATCGG 471 Query 421 AAAATTCGAACTCTCAACCTCCATATTTCACCCGATCTTAAACACGCTCACGAAGAAGAA 480 | |||||| ||||||||||| | ||||||| ||||||||||||||||||||||||||||| Sbjct 472 AGAATTCGGACTCTCAACCTGCGTATTTCATCCGATCTTAAACACGCTCACGAAGAAGAA 531 Query 481 CA-AGTTCGAAGAAGCTTGGCGCGTGGCGGAATTGATGAGATCTCACGCGATTCCGATGG 539 || | | |||||||||||||||||||| |||||||||||||||||||||||||||| ||| Sbjct 532 CAGAAT-CGAAGAAGCTTGGCGCGTGGTGGAATTGATGAGATCTCACGCGATTCCGGTGG 590 Query 540 ACGTGACGTCATATAACTACTTTTTAACTTCGCATTGTTACGACGGTGACGTGGCGGAGG 599 ||||||| ||||| || || |||||||||||||||||||||||||||||||||||||||| Sbjct 591 ACGTGACTTCATACAATTATTTTTTAACTTCGCATTGTTACGACGGTGACGTGGCGGAGG 650 Query 600 CGAGCAAGGTGTTGAGGAAGATGGA--A-GAGGAGG--G-AGTTATGTCGCCGGACACGC 653 |||||| |||||||||||||||||| | ||||||| | |||||||||||| ||||||| Sbjct 651 CGAGCAGGGTGTTGAGGAAGATGGAGGAAGAGGAGGAAGGAGTTATGTCGCCAGACACGC 710 Query 654 GTACTTACGACGCGCTTGTGTTAGGCGCGTGTAAATCAGGGA-ATGTTGAAGCGGCGATG 712 |||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||| Sbjct 711 GTACTTACGACGCGCTTGTGTTAGGCGCGTGTAAGTCAGGGAGA-GTTGAAGCGGCGATG 769 Query 713 GTGATTCTGAGGAGGATGGAGGAAGAAGGGTTATCGGTATTGTACGCCACTCATGCGTAC 772 | |||||||||||||||||||||||||||||||||||||||||||||||| |||||| || Sbjct 770 GCGATTCTGAGGAGGATGGAGGAAGAAGGGTTATCGGTATTGTACGCCACGCATGCGCAC 829 Query 773 GTTATTGGAGAGTTGCTGGAGAGTGGCTATTATGCGCTGTCTGTGGAATTTGTGATGGCG 832 ||||| ||||| || |||||||||||||||||||||| |||||| |||||||||||| Sbjct 830 GTTATAGGAGAAATGGTGGAGAGTGGCTATTATGCGCTAAGTGTGGAGTTTGTGATGGCG 889 Query 833 TACGCCGGAAAAGATAAGAAATTAGATGAAGAGAATTTGGGAAGTTTAGCTAGTAAGCTT 892 ||||| || |||||||||| ||||||||||||||||||||||||||| |||||||||||| Sbjct 890 TACGCGGGGAAAGATAAGAGATTAGATGAAGAGAATTTGGGAAGTTTGGCTAGTAAGCTT 949 Query 893 ATTAAGAGGAAGAGGTTTAAAGATGCTAAGTTGGTTTTGAAGGAGATGAGTGTTAGAGGA 952 || |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| Sbjct 950 ATCAAGAGGAAGAGGTTTAAAGAAGCTAAGATGGTTTTGAAGGAGATGAGTGTTAGAGGA 1009 Query 953 TTGAGAATGGGAAATGCTTTATGTGAATTTCATGATACCAATGTGTTAAAATCATGATTT 1012 ||||||||||| ||||||| ||||||||||||| | ||||||||| ||||||||||| Sbjct 1010 TTGAGAATGGGTGATGCTTTGCGTGAATTTCATGAGAAAAATGTGTTACAATCATGATTT 1069 Query 1013 TGATCCTAAGAAGGAGAATCACCATTGTTACAAAGAGATAAAAATCAACTTTGAAGGAGG 1072 |||| ||||||| |||| |||||||||||||| || |||||||| |||||||||||||| Sbjct 1070 TGATTCTAAGAATGAGA-TCACCATTGTTACA--GACATAAAAATGAACTTTGAAGGAGG 1126 Query 1073 TTAGTGTAAAACAGTTAGCTTCTCTGCGAttttttt---CACATGCAGTGTTTGTTGGTT 1129 | |||||||| ||||||||||||||||| ||||||| ||||||||| |||| || ||| Sbjct 1127 TAAGTGTAAA-CAGTTAGCTTCTCTGCGTTTTTTTTTTTCACATGCAGAGTTTTTTTGTT 1185 Query 1130 TCCAATAAGAATGTATTGACTCGTGGCTTCAAGTTC 1165 |||| ||||||||| |||||| |||||||||||||| Sbjct 1186 TCCATTAAGAATGTTTTGACTTGTGGCTTCAAGTTC 1221 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57178420755 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5