BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486045
Length=1900
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56050.1 | Symbols: | Protein kinase family protein | chr3:... 2739 0.0
AT2G40270.1 | Symbols: | Protein kinase family protein | chr2:... 809 0.0
> AT3G56050.1 | Symbols: | Protein kinase family protein | chr3:20797955-20800943
REVERSE LENGTH=2104
Length=2104
Score = 2739 bits (1483), Expect = 0.0
Identities = 1715/1826 (94%), Gaps = 20/1826 (1%)
Strand=Plus/Plus
Query 39 AGATCGAGACTTGGATTTCTCAGCTTTTTCGTGCTGCTTTAGCTTCTGCTCGGTTTTG-- 96
|||||||||||||||||| ||||||| | |||||| ||||||||||||||||||||||
Sbjct 163 AGATCGAGACTTGGATTTATCAGCTTCTCCGTGCTCCTTTAGCTTCTGCTCGGTTTTGTT 222
Query 97 -TTTTTAGTCTGACGATGAGTAACAACTGGAAATTCGTTCGATTAAGGCTTCAAAACCGT 155
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 223 TTTTTTAGTCTGACGATGAGTAACAACTGGAAATCCGTTCGATTAAGGCTTCAAAATCGT 282
Query 156 ACTCTCGTGTTTCTTCTGGTGATTTTGAGCTTCGGTTCTTGCTATTCGTTTAAATCTCAA 215
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 283 ACTCTCGTGTTTCTTCTGGTGATTTTGAGCTTCGGTTCTTGCTATTCGTTGAAATCTCAA 342
Query 216 GGTGGTCGTTTTCTGGAATTTGTGACGAAGGATCTATCGTCAGATACAGATTCCGAGGAT 275
|||| | |||||||||||| |||||||| ||||||| |||||||| |||| | ||||||
Sbjct 343 GGTGATGGTTTTCTGGAATCCGTGACGAAAGATCTATGGTCAGATATAGATGCTGAGGAT 402
Query 276 TTGAGAGCGGTTGGTTTTCACAGGAAATTACTTGGCCGTTTTCGTAACCCATATACCCAT 335
|||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 403 TTGAGAGCAGTTGGTTTTCACAGGAAATTACTTGGCCGTTTTCGTAACCCGTACACCCAT 462
Query 336 TTGACTACGTTCAGAGACCGGCCTGTGGCAAGAGCTACACCTCCGTCTTCTTCGGTTTCT 395
|||| | ||||||| ||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 463 TTGAATGCGTTCAGGGACCGCCCTGTGGCAAGAGCTACACCTCCGTCATCTTCGGTTTCT 522
Query 396 CCGAGACCTAATGCCaaaaaaaCCT-TAACATTGCCTTCC-CCACAAAAAAGTCCACCTG 453
|||||||| ||||||||| | ||| | |||||||| ||| |||||||||||||| ||||
Sbjct 523 ACGAGACCTGATGCCAAAAGATCCTCT-ACATTGCC-TCCGCCACAAAAAAGTCCTCCTG 580
Query 454 CGCGACATGTTTCTGCTCCACCTCCTCTTT-TGCACCCTGTGAATTTTCCTAGTCTAAGA 512
||| |||||||||||||||||||||| ||| |||||| ||||| ||| |||||||||| |
Sbjct 581 CGCAACATGTTTCTGCTCCACCTCCT-TTTGTGCACCATGTGACTTTACCTAGTCTAACA 639
Query 513 AGAAGCTCCAAAACTTCTTCAAACAGCACAATTCCTATAGTGGCTGGCTGCGTAGGC-GG 571
|| |||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 640 AGCAGCTCCAAAACTTCTTCAAACAGCACAATTCCTATAGTGGCTGGCTGCATA-GCGGG 698
Query 572 TGCTGTGTTTATCCTCCTTTTAGCTACTGGTGTCttt-tttttCAAAAGTAAGGCTGGAA 630
||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||| |
Sbjct 699 TGCTGTGTTTATCCTCCTTTTAGCTACTGGTGT-TTTCTTTTTTAAAAGTAAGGCTGGGA 757
Query 631 AATCTGTGAATCCCTGGCGTACAGGTCTTAGTGGACAACTTCAGAAAGTGTTCATAACTG 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 758 AATCTGTGAATCCCTGGCGTACAGGTCTTAGTGGACAACTTCAGAAAGTGTTCATAACTG 817
Query 691 GTGTCCCCAAACTCAAAAGATCTGAGATTGAAGCTGCCTGTGAAGACTTCAGTAATGTTA 750
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
Sbjct 818 GTGTCCCCAAACTCAAAAGATCTGAGATTGAAGCTGCCTGTGAAGATTTTAGTAATGTCA 877
Query 751 TTGGGTCTTGTCCCATTGGTACATTGTTCAAAGGGACGCTATCAAGTGGGGTGGAGATAG 810
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 878 TTGGGTCTTGCCCCATTGGTACATTGTTCAAAGGGACGCTATCAAGTGGGGTGGAGATAG 937
Query 811 CTGTGGCTTCTGTTGCCACTGCCTCTGCCAAGGAATGGACAAATAACATAGAAATGCAGT 870
|||||||||||||||| ||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 938 CTGTGGCTTCTGTTGCTACTGCGTCTGCCAAAGAATGGACAAATAATATAGAAATGCAGT 997
Query 871 TCAGAAAGAAGATTGAGATGTTATCCAAGATAAACCACAAAAATTTTGTCAACCTTCTTG 930
||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 998 TCAGAAAGAAGATCGAAATGTTATCCAAGATAAACCACAAGAATTTTGTCAACCTTCTTG 1057
Query 931 GTTACTGTGAAGAAGATGAGCCTTTCACTAGGATCTTGGTGTTTGAATATGCATCAAATG 990
|||||||||||||||| || |||||||||||||||||||| ||||||||||||||||| |
Sbjct 1058 GTTACTGTGAAGAAGAAGAACCTTTCACTAGGATCTTGGTCTTTGAATATGCATCAAACG 1117
Query 991 GAACAGTCTTTGAACATTTACACTATAAAGAATCAGAACACTTGGACTGGGTAATGCGGC 1050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1118 GAACAGTCTTTGAACATTTACACTATAAAGAATCAGAACACTTGGACTGGGTAATGCGGC 1177
Query 1051 TAAGAATAGCAATGGGCATAGCTTATTGCCTTGACCATATGCACGGACTCAAGCCACCTC 1110
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1178 TAAGAATAGCAATGGGCATAGCTTATTGCCTTGACCATATGCACGGACTCAAGCCACCTA 1237
Query 1111 TAGTCCACAGCAATCTTCTTTCATCATCAGTTCAACTTACAGAGGACTACGCTGTCAAAA 1170
||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||
Sbjct 1238 TAGTCCACAGCAATCTTCTCTCATCATCAGTTCAACTCACAGAGGACTACGCAGTCAAAA 1297
Query 1171 TTGCGGATTTCAATTTTGGATATCTAAAAGGCCCATCCGAGACAGAAAGCAGCACCAATG 1230
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1298 TTGCGGATTTCAATTTTGGATATTTAAAAGGCCCATCCGAGACAGAAAGCAGCACCAATG 1357
Query 1231 CACTCATAGATACAAACATCTCAGAAACAACACAGGAAGAGAATGTTCACAGCTTCGGGT 1290
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1358 CACTCATAGATACAAACATCTCAGAAACAACACAAGAAGACAATGTTCACAGCTTCGGGT 1417
Query 1291 TGCTGTTGTTTGAATTGATGACTGGAAAACTCCCAGAGTCGGTTAAAAAAGGTGACTCGA 1350
|||||||||||||| ||||||| ||||||||||||||||| ||| |||||||||||||||
Sbjct 1418 TGCTGTTGTTTGAACTGATGACAGGAAAACTCCCAGAGTCAGTTCAAAAAGGTGACTCGA 1477
Query 1351 TAGATACCGGATTGGCTGACTTCTTGAGAGGAAAGACATTAAGGGAGATGGTGGATCCAA 1410
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1478 TAGATACCGGATTGGCTGTCTTCTTGAGAGGAAAGACATTAAGGGAGATGGTGGATCCGA 1537
Query 1411 CAGTGGAATGCTTTGATGACAAGATTGAGAATATAGGTGAAGTGATCAAAAGCTGCATAA 1470
|| | ||| ||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1538 CAATTGAAAGCTTTGACGAGAAGATTGAGAATATAGGTGAAGTGATCAAAAGCTGCATAA 1597
Query 1471 GGGCAGACCCGAAACAGAGACCGATAATGAAAGAAGTCACAGGGAGATTACGAGAGATCA 1530
| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1598 GAGCAGACGCGAAACAGAGACCGATAATGAAGGAAGTCACAGGGAGATTACGAGAGATCA 1657
Query 1531 CTGGATTATCACCAGACGATGCTATCCCAAAACTGTCACCGCTCTGGTGGGCAGAGCTGG 1590
||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||
Sbjct 1658 CTGGATTATCACCAGACGACACTATCCCAAAACTTTCACCACTCTGGTGGGCAGAGCTGG 1717
Query 1591 AAGTTCTGTCCACTGCGTGAAGAGACTACTACTCTACTTCACGAAAAA-TCTGTAAGTAT 1649
|||||||||||||||||||||||||| |||||| ||||||| ||||| |||||||||||
Sbjct 1718 AAGTTCTGTCCACTGCGTGAAGAGACAACTACTGAACTTCACAAAAAAATCTGTAAGTAT 1777
Query 1650 TAATATGAAGATTTGAGTGAGGTTTTTGAGTC-CTTTGAAGCTCTTGGCTTCTCTTTAGG 1708
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 1778 TAATATGAAGATTTGAGTGAGGTTTTTGAGTCTCTTAGAAGCTCTTGGCTTCTCTTTAGG 1837
Query 1709 CTACTTTCATCTATCtatatatatataAATGTATGGAACTTAGTTTATATAACGGCCTTA 1768
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||
Sbjct 1838 CTACTTTCATCTATCTATCTATATATAA--GTATGGAACTTAGTTTATATAACGGCTTTA 1895
Query 1769 AAATTTGGGTTGATCCATTTGGTCTTTTATGTCGTAAACAGAAAATGTCCTAGATAACGT 1828
||||| || | |||| |||||||| ||||||||||||||||||||||||||| || |||
Sbjct 1896 AAATTCGG-TGGATCTATTTGGTCGTTTATGTCGTAAACAGAAAATGTCCTA-ATCACGG 1953
Query 1829 TAATACCCCTTTTTTGGTGTGCATAA 1854
|||||||||||||| |||||||||||
Sbjct 1954 TAATACCCCTTTTT-GGTGTGCATAA 1978
> AT2G40270.1 | Symbols: | Protein kinase family protein | chr2:16821934-16824506
REVERSE LENGTH=1851
Length=1851
Score = 809 bits (438), Expect = 0.0
Identities = 886/1096 (81%), Gaps = 55/1096 (5%)
Strand=Plus/Plus
Query 544 TTCCTATAGTGGCTGGCTGCGTAGGCGGTGCTGTGTTTATCCTCCTTTTAGCTACTGGTG 603
||||| |||| | ||||||||||||||||||| | ||| | |||||| ||||||| |||
Sbjct 589 TTCCTTTAGTTGTTGGCTGCGTAGGCGGTGCTTTTTTTCTTCTCCTTGTAGCTACCGGTC 648
Query 604 TCttttttttCAAAAGTAAGG-CTGGAAAATCTGTGAATCCCTGGCGTACAGGTCTTAGT 662
||| ||||||| |||||||| | |||||| |||||||||| |||||||| |||||||||
Sbjct 649 TCTACTTTTTCACAAGTAAGGCCGGGAAAA-CTGTGAATCCTTGGCGTACTGGTCTTAGT 707
Query 663 GGACAACTTCAGAAAGTGTTCATAACTGGTGTCCCCAAACTCAAAAGATCTGAGATTGAA 722
||||||||||||||||| ||| | |||||| | || ||||||||||||||||||||||
Sbjct 708 GGACAACTTCAGAAAGTATTCGTTACTGGTATTCCTGTACTCAAAAGATCTGAGATTGAA 767
Query 723 GCTGCCTGTGAAGACTTCAGTAATGTTATTGGGTCTTGTCCCATTGGTACA-TTGTTCAA 781
||||| |||||||| || |||||||| ||||| |||||||||||||| | | ||||||||
Sbjct 768 GCTGCATGTGAAGATTTTAGTAATGTCATTGGATCTTGTCCCATTGGGA-AGTTGTTCAA 826
Query 782 AGGGACGCTATCAAGTGGGGTGGAGATAGCTGTGGCTTCTGTTGCCACTGCCT-CTGCCA 840
||| || |||||||||| |||||||| ||||| |||||| |||| ||| || ||||||
Sbjct 827 AGGAACATTATCAAGTGGAGTGGAGATTGCTGTTGCTTCTTTTGCTACT-ACTACTGCCA 885
Query 841 AGGAATGGACA-AATAACATAGAAATGCAGTTCAGAAAGAAGATTGAGATGTTATCCAAG 899
| || |||| | | | | |||||| || ||||| |||||||| || |||||||| |||
Sbjct 886 AAGACTGGA-AGGACAGTACAGAAATTCACTTCAGGAAGAAGATCGAAATGTTATCGAAG 944
Query 900 ATAAACCACAAAAATTTTGTC-AACCTTCTTGGTTACTGTGAAGAAGATGAGCCTTTCAC 958
|| |||||||| ||||||| | |||||||||||||| ||||||||| | || ||||||||
Sbjct 945 ATCAACCACAAGAATTTTG-CAAACCTTCTTGGTTATTGTGAAGAAAAGGAACCTTTCAC 1003
Query 959 TAGGATCTTGGTGTTTGAATATGCAT-CAAATGGAACAGTCTTTGAACATTTACACTATA 1017
||||||||| | ||||| ||||| | |||||||| || ||||||| |||||||| ||||
Sbjct 1004 CAGGATCTTGATCTTTGAGTATGC-TCCAAATGGATCACTCTTTGAGCATTTACATTATA 1062
Query 1018 AAGAATCAGAACACTTGGACTGGGTAATGCGGCTAAGAATAGCAATGGGCA-TAGCTTAT 1076
||||||||||||||||||| |||| ||||||| ||||||| |||||||| | |||| |||
Sbjct 1063 AAGAATCAGAACACTTGGATTGGGGAATGCGGTTAAGAATTGCAATGGG-ATTAGCATAT 1121
Query 1077 TGCCTTGACCATATGCACGGACTCAAGCCACCTCTAGTC-CACAGCAATCTTC-TTTCAT 1134
|||||||||||||||||| |||||| |||||| ||| | |||| ||||| || | ||||
Sbjct 1122 TGCCTTGACCATATGCACCAACTCAATCCACCTATAG-CTCACACCAATC-TCGTCTCAT 1179
Query 1135 CATCAGTTCAACTTACAGAGGACTACGCTGTCAAAAT-TGCGGATTTCAATTTTGGAT-A 1192
|||| |||| || |||||||| || ||||||||| | | | ||||||| ||| || | |
Sbjct 1180 CATCTCTTCAGCTCACAGAGGATTATGCTGTCAAAGTAT-CAGATTTCAGTTTCGGTTCA 1238
Query 1193 TCTAAAAGGCCCATCCGAGACAGAA-AGCAGCACCAATGCACTCATAGATACAAACATCT 1251
||| | | | | ||||| || | || || ||| || ||||||| ||| ||||||
Sbjct 1239 TCT--GA-G---A-CAGAGAC-TAACATCAACAACAACACAGTCATAGACACACACATCT 1290
Query 1252 CAG-AAACAA-CACAGGAAGAGAATGTTCACAGCTTCGGGTTGCTGTTGTTTGAATTGAT 1309
||| || | || ||||| || || ||||||| || || ||||| || ||| ||||
Sbjct 1291 CAGCCTTGAATC-CA-GAAGACAACATTTACAGCTTTGGTTTACTGTTATTCGAAATGAT 1348
Query 1310 GACTGGAAAACTCCCAGAGTCGGTTAAAAAAGGTGACTCGA-TAGATA-C-CGGATTGGC 1366
|| || |||||| ||| || ||||| ||| |||||| | |||||| | | | |||
Sbjct 1349 AACCGGGAAACTCATAGAATCCGTTAACAAACCTGACTC-AGTAGATAGCTC-G-CTGGT 1405
Query 1367 TGACTTCTTGAGAGGAAAGACAT-TAAG-GGAGATGGTGGATCCAACAGTGGAATGCTT- 1423
||| ||||| |||||| |||| | | || | ||||| ||||||||| |||||| |||
Sbjct 1406 TGATTTCTTAAGAGGAGAGAC-TCT-AGCCAAAATGGTAGATCCAACACTGGAAT-CTTA 1462
Query 1424 TGATGACAAGATTGAGAATATAGGTGAAGTGATCAAAAGC-TGCATAAGGGCAGACCCGA 1482
||||| ||||||||||||||||||||||||||||||| | ||| | ||| | |||||||
Sbjct 1463 TGATGCCAAGATTGAGAATATAGGTGAAGTGATCAAAT-CATGCCTTAGGACTGACCCGA 1521
Query 1483 AACAGAGACCGATAATGAAAGAAGTCACAGGGA-GATTACGAGAGATCACTGGATTATCA 1541
|| ||||||| | |||| ||||||||||||| | | ||||| |||||||| ||||| |||
Sbjct 1522 AAGAGAGACCTACAATGCAAGAAGTCACAGG-ATGGTTACGGGAGATCACGGGATTGTCA 1580
Query 1542 CCAGA-CGATGCTATC-CCAAAACTGTCACCGCTCTGGTGGGCAGAGCTGGAAGTTCTGT 1599
|| || |||||||| | || ||| ||||||| || |||||||||||| |||| ||| |||
Sbjct 1581 CC-GAACGATGCTA-CACCGAAATTGTCACCTCTTTGGTGGGCAGAGTTGGAGGTTTTGT 1638
Query 1600 CCACTGCGTGAAGAGA 1615
|||| |||| ||||||
Sbjct 1639 CCACGGCGT-AAGAGA 1653
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94075821330
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5