BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486050
Length=988
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56110.1 | Symbols: PRA1.B1 | prenylated RAB acceptor 1.B1 |... 1465 0.0
> AT3G56110.1 | Symbols: PRA1.B1 | prenylated RAB acceptor 1.B1
| chr3:20821934-20823008 REVERSE LENGTH=1075
Length=1075
Score = 1465 bits (793), Expect = 0.0
Identities = 929/994 (93%), Gaps = 12/994 (1%)
Strand=Plus/Plus
Query 1 TTCACACTTACGGATCCAAACCTCTCGGCCAAATCAGCTGCACCAAACCTCACGCGCCAC 60
|||| ||| ||||||| |||| |||| ||||||||||| ||| | ||||||||||||| |
Sbjct 88 TTCAGACTAACGGATCGAAACTTCTCAGCCAAATCAGCCGCATCTAACCTCACGCGCCGC 147
Query 61 CGCGATGGCAACTCCACCGACGCTACCTGTCACCAATCAGCAAGCAGTTCAATCTCAGCC 120
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 148 CGCAATGGCAACTCCACCGACGCTACCTGTCACCAATCAGCAAGCTGTTCAATCTCAGCC 207
Query 121 ACCAATCAACACACCTGCTTTTCGTACTTTCTTCTCACGTCTCTCTACCTCGATCCGTGA 180
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 208 TCCAATCAACACACCTGCTTTTCGTACTTTCTTCTCACGTCTCTCCACCTCGATCCGTGA 267
Query 181 TGGCTTGTCACAGCGTCGTCCATGGACGGAGCTCATCGATCGGAGTTCCATGGCTCGACC 240
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 268 TGGCTTGTCACAGCGTCGTCCATGGACGGAGCTCATCGATCGTAGTTCCATGGCGAGACC 327
Query 241 TGAATCTCTCACCGATGCCTTGTCCCGGATCAGGAAAAATCTCGCTTACTTCAAGGTTAA 300
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 328 TGAATCTCTCACCGATGCCTTGTCCCGGATAAGGAAGAATCTCGCTTACTTCAAGGTTAA 387
Query 301 CTACGTCGCAATCGTGTCGCTCGTGCTCGCCTTTTCGCTTTTCTCTCATCCTCTCTCCCT 360
||||||||| ||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 388 CTACGTCGCCATCGTCTCCCTCGTACTCGCCTTTTCGCTTTTCTCTCATCCTCTCTCCCT 447
Query 361 CCTTGTCCTCATCGGACTCCTAGGTGGTTGGATGTTCCTCTACCTCTTCCGTCCCTCAGA 420
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 448 CCTTGTCCTCATCGGACTCCTAGGCGGTTGGATGTTTCTCTACCTCTTCCGTCCCTCAGA 507
Query 421 TCAGCCACTGGTCATCTTCGGTCGCACTTTTTCTGATCGAGAGACTCTACTTGCTCTGGT 480
||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||| ||
Sbjct 508 TCAGCCACTGGTCGTCTTCGGTCGCACTTTCTCTGATCGAGAGACTCTGCTTGCTCTTGT 567
Query 481 -CTTGTCTACGATCGTCGTCGTGTTTATGACGAGCGTTGGATCTCTCTTAACCTCCGCGC 539
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 GC-TGTCTACGATCGTCGTCGTGTTTATGACGAGCGTTGGATCTCTCTTAACCTCCGCGC 626
Query 540 TTATGATTGGCGTAGCAATCGTTTGCGTGCACGGTGCGTTTGTGGTTCCGGATGATCTCT 599
|||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 627 TTATGATTGGTGTTGCAATCGTTTGCGTACACGGTGCGTTTGTGGTTCCGGATGATCTCT 686
Query 600 TCATGGACGATCAAGAGCCTGCGAATGCTGGATTACTCTCATTCCTTGGAGGTTCTGCTA 659
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 687 TCTTGGACGAGCAAGAGCCTGCGAATGCTGGATTACTCTCATTCCTTGGAGGTTCTGCTA 746
Query 660 CCTCAGCTGCTGCTGCTGTCTCAGGGAGAGTTTAAGAGCTCGATTTGATTCAGATCTCTT 719
||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| |
Sbjct 747 CCTCAGCTGCTGCAGCTGTCTCAGGGAGAGTCTAAGAGCTGGATTTGATTCAGATCTCGT 806
Query 720 CAATCGTGGTTGGTAACTCCGTACTGATTCTAGGGATTTGGTGTTGTTGAATTG-AATGT 778
|||| |||||||||||||||||||||||| ||| |||||| |||||||||| || |||||
Sbjct 807 CAATTGTGGTTGGTAACTCCGTACTGATTTTAGTGATTTGTTGTTGTTGAAATGGAATGT 866
Query 779 AGATTCGTAACAAAGCTCTACAGATTTAGAATTACGAGTTTTTGGTTGCAATATCTGCTT 838
||||||||||| ||||||||||||||||||| ||||| |||||||||||| |||||||||
Sbjct 867 AGATTCGTAACGAAGCTCTACAGATTTAGAACTACGAATTTTTGGTTGCAGTATCTGCTT 926
Query 839 CTTCTTGCGTTGTTTTATCTCTTTGGTGGCTCGACACTTTTATGTTCAGATGTAGAGAAC 898
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 927 CTTCTTG--TTGTTTTATCTCTTTGGTGGCTCGACACTTTTATGTTCAGATGTAGAAAAC 984
Query 899 TCAAAAGTTGATCTTTCTCTATTGGT-CTCCTATTGTGGGATTCACTGTTAAA-TTTCCA 956
||||| |||||||||||||||| | | |||||||||||||||||||| ||||| |||| |
Sbjct 985 TCAAA-GTTGATCTTTCTCTATCGTTTCTCCTATTGTGGGATTCACTTTTAAAATTTC-A 1042
Query 957 TCT-CGCTT-AAATTGGTTTGTTCTCTTGTTTCC 988
||| | ||| |||| |||||||||||| |||||
Sbjct 1043 TCTAC-CTTCAAATCAGTTTGTTCTCTTTTTTCC 1075
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48375483561
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5