BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486053
Length=1210
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56130.1 | Symbols: | biotin/lipoyl attachment domain-conta... 1893 0.0
> AT3G56130.1 | Symbols: | biotin/lipoyl attachment domain-containing
protein | chr3:20826658-20829270 FORWARD LENGTH=1303
Length=1303
Score = 1893 bits (1025), Expect = 0.0
Identities = 1154/1216 (95%), Gaps = 10/1216 (1%)
Strand=Plus/Plus
Query 1 ACGGACCGTAGTGTTGTAGTAGATGTGGCGGACGGAGTAACCAAAGAAGAAGGCCGCTCA 60
|||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 1 ACGGACCGTAGTGTAGTAGTAGATGCGGCGGACGGAGTTACCAAAGAAGAAGGCCGCTCA 60
Query 61 AAATAATTAAATTTGCTCAACCGTCATCTTCTTCAACCGATCTTAGCTCAACTAACCCA- 119
||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 61 AAATAATTAAATTTGTTCAACCGTCATCTTCTTCAACTGATCTTAGCTCAACTAACACAC 120
Query 120 T-TGTTCTTTTTGGCGTTAACTCAATCAACCAAAACC-TTTTCTCCTTTCTAGCTCACGC 177
| | ||||| ||||||| || |||||||||||||||| ||||||||| ||||||||||||
Sbjct 121 TCT-TTCTTCTTGGCGTCAATTCAATCAACCAAAACCTTTTTCTCCTATCTAGCTCACGC 179
Query 178 TTTCTTCTTCTTCCAATGGCGTCTTCTGCAGCTCTCGGATCTCTCCATCAGACTTTAGGG 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TTTCTTCTTCTTCCAATGGCGTCTTCTGCAGCTCTCGGATCTCTCCATCAGACTTTAGGG 239
Query 238 TGC-GCCATTAATTCACAGAGTGAGGTTCACTCTCTTTCTGAAAACTGGTCTGCCTCTGG 296
| | ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 240 T-CAGCCATTAATTCACAGAGTGAGGTTCACTCGCTTTCTGGAAACTGGTCTGCCTCTGG 298
Query 297 TAATTCTTGTGTACCACGGTGGAGATTATCCAACAGGAACAGCAAGTACACGCTTGTGTT 356
|||||| ||||| |||||||||||||||||||||||||||||||| |||| ||| |||||
Sbjct 299 TAATTCATGTGTGCCACGGTGGAGATTATCCAACAGGAACAGCAACTACAGGCTCGTGTT 358
Query 357 ACGTGCTAAGGCCGCTAAATCTTCAACAACAACCAAAAGTGATGGTTCATCGGATGCTAG 416
|||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||
Sbjct 359 ACGTGCTAAGGCCGCTAAATCTTCGACAACAACCATAAGTGATGGTTCATCTGATGCTAG 418
Query 417 TGTGTCAAACGGGAAGAAAACTGTTCGACGGATCACTTTCCCGAAAGAAGTGGAGGCACT 476
||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 419 TGTGTCAGACGGGAAGAAAACAGTTCGACGGATAACTTTCCCGAAAGAAGTGGAGGCACT 478
Query 477 GGTTCACGAGATGTGTGATGAAACTGAGGTTGCTGTGCTGCAACTTAAGGTTGGAGATTT 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GGTTCACGAGATGTGTGATGAAACTGAGGTTGCTGTGCTGCAACTTAAGGTTGGAGATTT 538
Query 537 CGAGATGAACCTAAAACGGAAGATTGGAGCGGCCACAAACCCCATTCCCATGGCGGATAT 596
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 539 CGAGATGAACCTAAAACGGAAGATTGGAGCAGCCACAAACCCCATTCCCGTGGCGGATAT 598
Query 597 ATCTCCAACCATAGCTCCTCCTATTCCTTCTGAACCCATGAATAAATCTGTTTCTTCAGC 656
||||||||| |||| |||||||||||||||||||| ||||||||||||| |||||| ||
Sbjct 599 ATCTCCAACTGTAGCGCCTCCTATTCCTTCTGAACCTATGAATAAATCTGCTTCTTCGGC 658
Query 657 TCCTAGCCCATCTAAAGCAAAACCTTCCTCTGAAAAAGTGTCTCCATTTAAGAATACATC 716
||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 659 TCCTAGCCCATCTCAAGCAAAGCCTTCCTCTGAGAAAGTGTCTCCATTTAAGAATACATC 718
Query 717 ATATGGGAAACCAGCAAAGTTGGCTGCTTTGGAGGCATCTGGATCTAACAACTATGT-TC 775
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
Sbjct 719 ATATGGGAAACCAGCAAAGTTGGCTGCTTTGGAGGCATCTGGATCCACCAACTATGTGT- 777
Query 776 TAGTCACATCTCCCGCAGTGGGCAAGTTTCAGAGGAGTAGAACTGTAAAAGGAAAGAAAC 835
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 778 TAGTCACATCTCCCGCAGTGGGCAAGTTTCAGAGGAGCAGAACTGTAAAAGGAAAGAAAC 837
Query 836 AATCTCCTAGCTGCAAAGAGGGTGATGCAATAAAGGAAGGCCAAGTTATTGGATACTTAC 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 AATCTCCTAGCTGCAAAGAGGGTGATGCAATAAAGGAAGGCCAAGTTATTGGATACTTAC 897
Query 896 ATCAGTTGGGAACAGAACTTCCAGTGACGTCGGATGTAGCTGGGGAAGTCCTTAAGCTTC 955
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 898 ATCAGTTGGGAACAGAACTTCCAGTGACGTCAGATGTAGCTGGAGAAGTCCTTAAGCTTC 957
Query 956 TTTCAGATGACGGAGACTCTGTAGGTTATGGTGATCCTCTGGTCGC-GATCTTGCCATCT 1014
||||||||||||||||||| ||||||||||| ||||||||||| || | |||||||||||
Sbjct 958 TTTCAGATGACGGAGACTCCGTAGGTTATGGAGATCCTCTGGTTGCAG-TCTTGCCATCT 1016
Query 1015 TTCCACGACATCAACATCCAGTGAGGACGGTTTCTTCAGCCCAATTCCGCATCAAATGAA 1074
|||||||||||||||||||||||| || |||||||||||||||||||| | ||||||||
Sbjct 1017 TTCCACGACATCAACATCCAGTGATGATGGTTTCTTCAGCCCAATTCCATAGCAAATGAA 1076
Query 1075 CAATCTTTCATCCGGAGACTGTACTATTCATCTTCTCCTGTGTTTGTTTAATGGAGATTT 1134
| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 1077 TAGTCTTTCATCCGGAGACTGTACTATTCATCTTCTCCTGTGTTTGTTCAATGAAGATTT 1136
Query 1135 GTAATCTGTTTAGTTGCAAAGAGTCTATTTTGATCTTGCTCTCATCATTTGTCACGTAAT 1194
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1137 GTAATCTGTTTAGTTGCAAAGAGTCTACTTTGATCTTGCTCTCATCATTTGTCACGTAAT 1196
Query 1195 GTGGATTTTCTGCACC 1210
||||||||||||||||
Sbjct 1197 GTGGATTTTCTGCACC 1212
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59437445280
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5