BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486056
Length=2864
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56150.1 | Symbols: EIF3C, ATEIF3C-1, EIF3C-1, ATTIF3C1, TIF... 3690 0.0
AT3G22860.1 | Symbols: TIF3C2, ATEIF3C-2, EIF3C-2, ATTIF3C2 | e... 1626 0.0
> AT3G56150.1 | Symbols: EIF3C, ATEIF3C-1, EIF3C-1, ATTIF3C1, TIF3C1
| eukaryotic translation initiation factor 3C | chr3:20833584-20837157
REVERSE LENGTH=3033
Length=3033
Score = 3690 bits (1998), Expect = 0.0
Identities = 2207/2306 (96%), Gaps = 21/2306 (1%)
Strand=Plus/Plus
Query 571 gatgTGGAGGAACCTACTGATAATCTCTCTTGGGAGAAGATGCTGAGCAAAAAAGATAAG 630
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 737 GATGTGGATGAACCTACTGATAATCTCACTTGGGAGAAGATGCTGAGCAAAAAAGATAAG 796
Query 631 CTTATGGAGAAGCTGATTAATAAAGATCCCAAAGAGATCACCTGGGACTGGGTCAACAAG 690
||| |||||||||| || ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 797 CTTTTGGAGAAGCTAATGAATAAAGATCCTAAAGAGATCACTTGGGACTGGGTCAACAAG 856
Query 691 AAGTTCAAGGAAATTGTGGCTTCTCGTGGGAAAAAGGGCACTGCTCGATTTGAGCTAGTT 750
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 857 AAGTTCAAGGAAATTGTGGCTGCTCGTGGAAAAAAGGGCACTGCTCGATTTGAGCTAGTT 916
Query 751 GATCAGCTTACGCACTTGACAAAGATTGCCAAGACTCCTGCGCAGAAGCTTGAAATCTTG 810
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 917 GATCAGCTTACGCACTTGACAAAGATTGCCAAGACTCCTGCACAGAAGCTTGAAATCTTG 976
Query 811 TTTAGCGTTATTTCGGCTCAGTTTGATGTGAATCCAGGTCTCAGCGGGCACATGCCTATC 870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 977 TTTAGCGTTATTTCGGCTCAGTTTGATGTGAATCCAGGTCTCAGCGGGCACATGCCTATC 1036
Query 871 AATGTCTGGAAGAAATGCGTGCTTAACATGCTCACCATACTGGACATTCTCGTCAAGTAC 930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 AATGTCTGGAAGAAATGCGTGCTTAACATGCTCACCATACTGGACATTCTCGTCAAGTAC 1096
Query 931 AATAACATTGTTGTGGATGACACAGTTGAACCTGATGAGAATGAAACTTCAAAGCCAGCA 990
| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||
Sbjct 1097 AGTAACATTGTTGTGGATGACACAGTTGAGCCTGATGAGAACGAAACTTCAAAGCCAACA 1156
Query 991 GATTATGATGGAAAAATCCGGGTCTGGGGAAATTTGGTTGCATTCTTGGAGAGGATTGAC 1050
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 1157 GATTATGATGGAAAAATTCGGGTCTGGGGAAATTTGGTTGCATTCTTGGAGAGGGTTGAC 1216
Query 1051 ACTGAGTTTTTCAAGAGTTTGCAATGCATTGATCCTCACACCCGTGAGTATGTTGAGAGA 1110
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1217 ACTGAGTTTTTCAAGAGTTTGCAATGCATTGATCCTCACACCCGTGAGTATGTTGAGAGG 1276
Query 1111 CTGAGGGATGAGCCCATGTTCTTGGCCCTTGCTCAGAACATCCAGGACTACTTCGAGCGG 1170
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1277 CTAAGGGATGAGCCCATGTTCTTGGCCCTTGCTCAGAACATCCAGGACTACTTTGAGCGG 1336
Query 1171 ATGGGTGATTTTAAAGCTGCTGCAAAGGTAGCCTTAAGACGAGTTGAGGCAATATATTAC 1230
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1337 ATGGGTGATTTTAAAGCTGCTGCAAAGGTAGCCTTAAGACGTGTTGAGGCAATATACTAC 1396
Query 1231 AAGCCCCAGGAAGTTTATGATGCTATGAGGAAATTGGCTGAGTTGGTGgaagaagaagaa 1290
||||||||||||||||||||||| ||||||||||||||||||||||| | |||
Sbjct 1397 AAGCCCCAGGAAGTTTATGATGCAATGAGGAAATTGGCTGAGTTGGT-------G--GAA 1447
Query 1291 gaagaagaagaaACTGAGGAGGCCAAAGTGGAGAGTGGACCTCCTACATCATTCATTGTT 1350
|||||||||||||||||||||||||||| ||| |||||||||||||| ||||| ||||||
Sbjct 1448 GAAGAAGAAGAAACTGAGGAGGCCAAAGAGGAAAGTGGACCTCCTACTTCATTTATTGTT 1507
Query 1351 GTTCCGGAGGTTGTTCCCCGAAAGCCTACCTTCCCAGAGAGCAGCCGAGCAATGATGGAT 1410
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1508 GTTCCGGAGGTTGTTCCCCGTAAGCCTACCTTCCCAGAGAGCAGCCGAGCTATGATGGAT 1567
Query 1411 ATTCTTGTGTCCCTTATCTACAGAAATGGAGATGAGCGAACCAAAGCTCGTGCGATGCTA 1470
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1568 ATTCTTGTGTCCCTTATCTACAGAAATGGAGATGAGCGGACCAAAGCGCGTGCGATGCTA 1627
Query 1471 TGTGATATCAATCACCATGCTTTAATGGACAACTTTGGGACTGCTAGAGACCTGTTGCTG 1530
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1628 TGTGATATCAATCACCATGCTTTAATGGACAACTTTGTGACTGCTAGAGACCTGTTGCTG 1687
Query 1531 ATGAGTCATCTGCAAGACAACATCCAGCACATGGACATCTCAACACAGATTCTCTTTAAC 1590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1688 ATGAGTCATCTGCAAGACAACATCCAGCACATGGACATCTCAACACAGATTCTCTTTAAC 1747
Query 1591 AGGACCATGGCGCAGCTTGGTCTTTGCGCCTTCCGGGTTGGAATGATCACTGAGTCCCAT 1650
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1748 AGGACCATGGCGCAGCTTGGTCTTTGCGCCTTCCGGGCTGGAATGATCACTGAGTCCCAT 1807
Query 1651 AGCTGCCTTTCCGAGCTGTATTCTGGTCAAAGGGTGAGGGAGTTGCTTGCCCAAGGTGTT 1710
|||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct 1808 AGCTGCCTTTCCGAGCTGTACTCTGGTCAAAGAGTGAGAGAGTTGCTTGCCCAAGGTGTC 1867
Query 1711 TCGCAAAGCCGATACCATGAGAAGACCCCAGAGCAGGAAAGGATGGAGAGGAGAAGACAA 1770
||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 1868 TCGCAAAGCCGATACCATGAGAAAACCCCGGAGCAGGAAAGGATGGAAAGGAGAAGACAA 1927
Query 1771 ATGCCGTACCACATGCACTTAAACCTCGAGCTCCTGGAGGCAGTTCATCTCATCTGTGCC 1830
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1928 ATGCCGTACCACATGCACTTAAACCTTGAGCTTCTGGAGGCAGTTCATCTCATCTGTGCC 1987
Query 1831 ATGCTACTTGAAGTCCCAAACATGGCTGCAAACTCGCACGATGCCAAACGCAGAGTGATT 1890
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1988 ATGCTTCTTGAAGTCCCAAACATGGCTGCAAACTCGCACGATGCCAAACGCAGAGTGATT 2047
Query 1891 AGCAAGAATTTCCGCCGCCTGCTCGAGATCAGTGAAAGGCAAGCATTCGCTGCGCCGCCT 1950
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 2048 AGCAAGAATTTCCGCCGCCTGCTCGAGATCAGTGAAAGGCAAGCATTCACTGCACCGCCT 2107
Query 1951 GAGAATGTACGTGACCACGTCATGGCAGCCACCAGAGCCCTGACCAAAGGGGATTTCCAG 2010
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 2108 GAGAATGTACGTGACCATGTCATGGCAGCCACCAGAGCCCTGACCAAAGGAGATTTCCAG 2167
Query 2011 AAGGCGTTTGAAGTTTTGAACTCTCTTGAGGTCTGGAGGCTGCTCAAGAACCGTGACAGC 2070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2168 AAGGCGTTTGAAGTTTTGAACTCTCTTGAGGTCTGGAGGCTGCTCAAGAACCGTGACAGC 2227
Query 2071 ATCCTCGATATGGTGAAGGATAGGATCAAAGAAGAGGCACTAAGGACTTACCTATTCACA 2130
||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2228 ATCCTTGACATGGTGAAGGATAGGATCAAAGAAGAGGCTCTAAGGACTTACCTATTCACA 2287
Query 2131 TACTCAAGCTCCTATGAGTCCTTAAGTCTTGATCAGCTGGCCAAAATGTTTGACGTCTCT 2190
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2288 TACTCAAGCTCTTATGAGTCCTTGAGTCTTGATCAGCTGGCCAAAATGTTTGACGTCTCT 2347
Query 2191 GAGCCGCAGGTCCACAGCATTGTGAGCAAGATGATGATTAATGAGGAGCTTCATGCAAGC 2250
|||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct 2348 GAGCCGCAGGTCCACAGCATTGTGAGTAAGATGATGATTAATGAGGAACTGCATGCAAGC 2407
Query 2251 TGGGACCAGCCAACTCAATGCATCGTCTTCCATGAAGTGCAACACAGCAGACTACAATCA 2310
||||| |||||||| | |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2408 TGGGATCAGCCAACACGATGCATCGTCTTCCATGAAGTGCAACACAGCAGATTACAATCA 2467
Query 2311 TTGGCTTTCCAGTTAACCGAGAAACTCTCGATTTTGGCAGAAAGCAATGAAAGGGCAATG 2370
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 2468 TTGGCTTTCCAGTTAACGGAGAAACTCTCGATTTTGGCAGAAAGCAATGAGAGGGCAATG 2527
Query 2371 GAATCTAGAACCGGTGGAGGTGGTGTGGATCTGAGCTCAAGGAGAAGGGACAACAATCAA 2430
|||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 2528 GAATCTAGAACCGGTGGAGGTGGTCTGGATCTGAGTTCAAGGAGAAGGGACAACAATCAG 2587
Query 2431 GACTATGCAGGAGCAGCATCAGGTGGTGGTGGATATTGGCAAGACAAGACGAATTACGGA 2490
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2588 GACTATGCAGGAGCAGCATCAGGTGGTGGTGGATATTGGCAAGACAAGGCGAATTACGGA 2647
Query 2491 CAAGGAAGACAGGGTAACAGGTCAGGGTATGGTGGAGGAAGATCATCTGGACAAAATGGT 2550
||||||||||| || ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 2648 CAAGGAAGACAAGGCAACAGATCAGGTTATGGTGGAGGAAGATCATCTGGACAAAATGGT 2707
Query 2551 CAGTGGTCAGGGCAGAACCGAGGAGGAGGGTATGCAGGAAGAGTTGGTTCAGGAAACAGA 2610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2708 CAGTGGTCAGGGCAGAACCGAGGAGGAGGGTATGCAGGAAGAGTTGGTTCAGGAAACAGA 2767
Query 2611 GGTATGCAGACGGATGGCTCAAGCCGTATGGTGAGTCTTAACCGAGGTGTTCGTACTTAA 2670
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2768 GGTATGCAGATGGATGGCTCAAGCCGTATGGTGAGTCTTAACCGAGGTGTTCGTACTTAA 2827
Query 2671 AGAGGATG---------C---AGTGTTGACCTTAGGCTCAACCTTTTGTTATGTTTTGAA 2718
|||||||| | |||||||||||||| |||||||||||||||||||||| |
Sbjct 2828 AGAGGATGAGGAGAAATCTGCAGTGTTGACCTTAGTCTCAACCTTTTGTTATGTTTTGGA 2887
Query 2719 TTCCTTTTTGTTATCAAATGGTTCTTTCTAAGAGATGTTCATCACATTTTCTCGCATTGT 2778
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2888 TTCCTTTTGGTTATCAAATGGTTCTTTCTAAGAGATGTTCATCACATTTTCTCGCATTGT 2947
Query 2779 GATTGCTTCTTTTCTTTGTGATATTGGCAGTTGTTGGAAAAAACTTTTAAGAATGCTTTA 2838
||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2948 GATTGTTTATTTTCTTTGTGATATTGGCAGTTGTTGGAAAAGACTTTTAAGAATGCTTTA 3007
Query 2839 TTGAAAAGTTTAATAAGTTTTTGTTT 2864
|| |||||||||||||||||| |||
Sbjct 3008 CTGGAAAGTTTAATAAGTTTTTTTTT 3033
Score = 839 bits (454), Expect = 0.0
Identities = 539/579 (93%), Gaps = 10/579 (2%)
Strand=Plus/Plus
Query 1 AAGATGACGTCTCGTTTTTTCGCTCAGGGTGGAAGTGAAAGTGAAGATGAGAGTGATTAT 60
||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||
Sbjct 122 AAGATGACGTCTCGTTTTTTCACTCAGGTTGGAAGTGAAAGTGAAGATGAAAGTGATTAT 181
Query 61 GAAGAAGAGGTTAATGAGGTTCAGAATGACGACGTCACTAACCGTTACCTTCAAAGTGGT 120
|| | |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 182 GAGGTAGAGGTTAATGAGGTTCAGAATGATGACGTCAATAACCGTTACCTTCAAAGTGGT 241
Query 121 AGTGAGGATGACTTGGAT-AT-C-GATACCAAACGTGTGGTTAAGCCTGCCAAAGATAAA 177
||||||||||| | ||| || | ||||| |||||||||||||||||||| || ||||||
Sbjct 242 AGTGAGGATGA--T-GATGATACTGATACGAAACGTGTGGTTAAGCCTGCTAAGGATAAA 298
Query 178 CGTTTTGAGGAGATGACCTACACTGTTGAGCAGATGAAGAATGCTATGAAGATTAATGAT 237
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 299 CGTTTTGAGGAGATGACCTACACTGTTGATCAGATGAAGAATGCTATGAAGATCAATGAT 358
Query 238 TGGGTTAGCCTTCAAGAAAACTTTGATAAGGTTAACAAACAGCTTGAGAAGGTTATGAGG 297
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TGGGTCAGCCTTCAAGAAAACTTTGATAAGGTTAACAAACAGCTTGAGAAGGTTATGAGG 418
Query 298 ATTACTGAGGCTGTCAAGCCTCCTACCTTGTATATCAAGACTCTTGTTATGTTGGAGGAT 357
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 419 ATTACTGAGGCTGTGAAGCCTCCTACCTTGTATATCAAGACGCTTGTTATGTTGGAGGAT 478
Query 358 TTCTTGATTGAAGCCCTTGCGAATAAGGAAGCCAAGAAGAAGATGAGCACTAGTAACTCC 417
||||||| |||||| ||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 479 TTCTTGAATGAAGCTCTTGCCAATAAGGAAGCCAAGAAGAAGATGAGTACTAGTAACTCC 538
Query 418 AAGGCTTTGAACTCTATGAAACAGAAACTGAAGAAGAACAATAAGCTGTACGAAGATGAT 477
|||||||||||||| |||||||||||| ||||||||||||||||| |||||||||| |||
Sbjct 539 AAGGCTTTGAACTCAATGAAACAGAAATTGAAGAAGAACAATAAGTTGTACGAAGACGAT 598
Query 478 ATCAACAAATATCGTGAGTCTCCAGAAGTTGAGGAAGAGAAACAACCtgaagatgacgac 537
|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 599 ATCAACAAGTATCGTGAGGCTCCAGAAGTTGAGGAAGAGAAACAACCTGAAGATGATGAT 658
Query 538 gatgaa-agtgatgacgatgatgag-tctgaagatgatg 574
||||| | ||||| ||||||||| | |||||||||||
Sbjct 659 GATGATGAC-GATGATGATGATGAGGT-TGAAGATGATG 695
> AT3G22860.1 | Symbols: TIF3C2, ATEIF3C-2, EIF3C-2, ATTIF3C2 |
eukaryotic translation initiation factor 3 subunit C2 | chr3:8090654-8093248
REVERSE LENGTH=2418
Length=2418
Score = 1626 bits (880), Expect = 0.0
Identities = 1441/1708 (84%), Gaps = 53/1708 (3%)
Strand=Plus/Plus
Query 764 ACTTGACAAAGATTGCCAAGACTCCTGCGCAGAAGCTTGAAATCTTGTTTAGCGTTATTT 823
||||||||||||| |||||||||||||| |||||| |||||||||||||||| |||||||
Sbjct 689 ACTTGACAAAGATCGCCAAGACTCCTGCACAGAAGGTTGAAATCTTGTTTAGTGTTATTT 748
Query 824 CGGCTCAGTTTGATGTGAA-TC--CAGGTCTCAGCGGGCACATGCCTATCAATGTCTGGA 880
| || ||||| ||||||| || ||||||||||| ||||||||||| |||||||||
Sbjct 749 CAGCAGAGTTTAATGTGAATTCTGGTGGTCTCAGCGGATACATGCCTATCGATGTCTGGA 808
Query 881 AGAAATGCGTGCTTAACATGCTCACCATACTGGACATTCTCGTCAAGTACAATAACATTG 940
||||||| ||| |||||||||| |||||||| |||||||| ||||||||| |||||||||
Sbjct 809 AGAAATGTGTGGTTAACATGCTTACCATACTTGACATTCTTGTCAAGTACTATAACATTG 868
Query 941 TTGTGGATGACACAGTTGAACCTGATGAGAATGAAACTTCAAAGCCAGCAG-ATTATGAT 999
|||||||||| || ||||||||||||||||| ||||||||||||||||| | | || |||
Sbjct 869 TTGTGGATGATACCGTTGAACCTGATGAGAAGGAAACTTCAAAGCCAGCGGCA-TACGAT 927
Query 1000 GGAAAAATCCGGGTCTGGGGAAATTTGGTTGCATTCTTGGAGAGGATTGACACTGAGTTT 1059
|||| || ||||||| ||||||||||||||||||||| |||| |||||| || ||||||
Sbjct 928 GGAACCATTCGGGTCTCGGGAAATTTGGTTGCATTCTTAGAGAAGATTGAGACAGAGTTT 987
Query 1060 TTCAAGAGTTTGCAATGCATTGATCCTCACACCCGTGAGTATGTTGAGAGACTGAGGGAT 1119
|||||||||||||| |||||||||||||||||| ||| ||||||||||| ||| |||
Sbjct 988 TTCAAGAGTTTGCAGTGCATTGATCCTCACACCAATGATTATGTTGAGAGGTTGAAAGAT 1047
Query 1120 GAGCCCATGTTCTTGGCCCTTGCTCAGAACATCCAGGACTACTTCGAGCGGATGGGTGAT 1179
||||| ||||||||||| |||||||||| ||||| |||||||| ||||||| || |||
Sbjct 1048 GAGCCTATGTTCTTGGCTCTTGCTCAGAGTATCCAAGACTACTTGGAGCGGACAGGCGAT 1107
Query 1180 TTTAAAGCTGCTGCAAAGGTAGCCTTAAGACGAGTTGAGGCAATATATTACAAGCCCCAG 1239
| |||||||||| ||||||||||||| | || ||| ||| |||| ||||||||||| ||
Sbjct 1108 TCTAAAGCTGCTTCAAAGGTAGCCTTTATACTAGTCGAGTCAATCTATTACAAGCCTCAA 1167
Query 1240 GAAGTTTATGATGCTATGAGGAAATTGGCTGAGTTGGTGgaagaagaagaagaagaagaa 1299
||||||| |||||||||||| ||||||||||| | | || | || | || | ||
Sbjct 1168 GAAGTTTTTGATGCTATGAGTAAATTGGCTGA--T-GAGG-A-AA-TTG-AG--G-AG-- 1215
Query 1300 gaaACTGAGGAGGCCAAAGTGGAGAGTGGACCTCCTACATCATTCATTGTTGTTCCGGAG 1359
| || | |||| ||||| | || | || || | ||||||||||||||| |||||
Sbjct 1216 G---CTAACGAGG--AAAGT-G-GA-T-CTTCTTCTTCTTCATTCATTGTTGTTGCGGAG 1266
Query 1360 GTTGTTCCCCGAAAGCCTACCTTCCCAGAGAGCAGCCGAGCAATGATGGATATTCTTGTG 1419
||||||| || |||||||||||| || |||||||| |||| |||||||||| |||||
Sbjct 1267 ATTGTTCCTCGTAAGCCTACCTTCGCAAAGAGCAGCAGAGCTATGATGGATACACTTGTA 1326
Query 1420 TCCCTTATCTACAGAAATGGAGATGAGCGAACCAAAGCTC-GTGCGATGCTATGTGATAT 1478
||| ||||||||| ||||||||||||| | |||||||| | | || ||||||||||||||
Sbjct 1327 TCCTTTATCTACAAAAATGGAGATGAGAGGACCAAAGC-CAGAGCAATGCTATGTGATAT 1385
Query 1479 CAATCACCATGCTTTAATGGACAACTTTGGGACTGCTAGAGACCTGTTGCTGATGAGTCA 1538
| |||| ||||||||||||||||| |||| |||||||||||| ||||||||||||||||
Sbjct 1386 CTATCAACATGCTTTAATGGACAATTTTGTTACTGCTAGAGACTTGTTGCTGATGAGTCA 1445
Query 1539 TCTGCAAGACAACATCCAGCACATGGACATCTCAACACAGATTCTCTTTAACAGGACCAT 1598
||| ||||| ||||| || |||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1446 TCTACAAGAAAACATTCAACACATGGACATCTCTACACAGATTCTCTTTAACAGGACAAT 1505
Query 1599 GGCGCAGCTTGGTCTTTGCGCCTTCCGGGTTGGAATGATCACTGAGTCCCATAGCTGCCT 1658
||| || |||||||||||||| || |||||||||||||| |||||||| |||||||| ||
Sbjct 1506 GGCACAACTTGGTCTTTGCGCTTTTCGGGTTGGAATGATAACTGAGTCACATAGCTGTCT 1565
Query 1659 TTCCGAGCTGTATTCTGGTCAA-AGGGTGAGGGAGTTGCTTGCCCAAGGTGTTTCGCAAA 1717
|| |||||||| ||||| || || || ||||||||||||| |||||||| |||||||
Sbjct 1566 CTCTGAGCTGTACTCTGG-GAATAGAGTTAGGGAGTTGCTTGGTCAAGGTGTCTCGCAAA 1624
Query 1718 GCCGATACCATGAGAAGACCCCAGAGCAGGAAAG--GATGGAGAGGAGAAGACAAATGCC 1775
| ||| |||| |||||||| ||||||| | | | ||||||||||||| |||||| ||
Sbjct 1625 GTCGAGACCACGAGAAGACAACAGAGCA-G-ATGCTTATGGAGAGGAGAACACAAATACC 1682
Query 1776 GTACCACATGCACTTAAACCTCGAGCTCCTGGAGGCAGTTCATCTCATC-TGTGCCATGC 1834
|||||| ||| || |||||||||||||| ||||||| ||| |||| | | ||||||||||
Sbjct 1683 GTACCATATGAACATAAACCTCGAGCTCTTGGAGGCTGTTTATCTTA-CTTGTGCCATGC 1741
Query 1835 TACTTGAAGTCCCAAACATGGCTGCAAACTCGCACGATGCCAAACGCAGAGTGATTAGCA 1894
|||||||||||||||||||||| ||||||||||| ||| |||||| || | ||||||||
Sbjct 1742 TACTTGAAGTCCCAAACATGGCAGCAAACTCGCATGATTCCAAACACAAACCGATTAGCA 1801
Query 1895 AGAAT-TTCCGCCGCCTGCTCGAGATCAGTGA-AAGGCAAGCATTCGCTGCGCCGCCTGA 1952
||||| ||| | ||||||||||||| ||||| || |||||| ||| |||| || |||||
Sbjct 1802 AGAATATTCAG-CGCCTGCTCGAGAAAAGTGAGAA-GCAAGCGTTCACTGCACCCCCTGA 1859
Query 1953 GAATGTACGTGACCACGTCATGGCAGCCACCAGAGCCCTGACCAAAGGGGATTTCC-AGA 2011
|||||||||| ||| ||||| ||||||||||||||||||| |||||| | |||| |||
Sbjct 1860 AAATGTACGTGTCCATGTCATTGCAGCCACCAGAGCCCTGATCAAAGGAAACTTCCAAGA 1919
Query 2012 AGGCGTTTGAAGTTTTGAACTCTCTTGAGGTCTGGAGGCTGCTCAAGAACCGTGACAGCA 2071
| |||||| |||||||||||||||||| ||||||| ||| |||||||||| |||||||
Sbjct 1920 A-GCGTTTTCAGTTTTGAACTCTCTTGATATCTGGAGACTGTTCAAGAACCGCGACAGCA 1978
Query 2072 TCCTCGATATGGTGAAGGATAGGATCAAAGAAGAGGCACTAAGGACTTACCTATTCACAT 2131
| |||||||||||||| | ||| |||| |||| ||| ||||||||||| |||||||||
Sbjct 1979 TACTCGATATGGTGAAAGCTAGTATCAGTGAAGTGGCTCTAAGGACTTATTTATTCACAT 2038
Query 2132 ACTCAAGCTCC---TATGAGTCCTTAAGTCTTGATCAGCTGGCCAAAATGTTTGACGTCT 2188
|||| |||||| || ||||||||||||| | | |||| ||||||||||||||| |||
Sbjct 2039 ACTCGAGCTCCTGTTACAAGTCCTTAAGTCTAGCTGAGCTAGCCAAAATGTTTGACATCT 2098
Query 2189 CTGAGCCGCAGGTCCACAGCATTGTGAGCAAGATGATGATTAATGAGGAGCTTCATGCAA 2248
||||| | || ||| | || |||||||||||||||||||| || |||||||| ||||||
Sbjct 2099 CTGAGTCACACGTCTATAGTATTGTGAGCAAGATGATGATCAACAAGGAGCTTAATGCAA 2158
Query 2249 GC-TGGGACCAGCCAACTCAATGCATCGTCTTCCATGAAGTGCAACACAGCAGA-CTACA 2306
| |||||||||||||||||||||||||||||||||||||||||||| | |||| | |||
Sbjct 2159 -CATGGGACCAGCCAACTCAATGCATCGTCTTCCATGAAGTGCAACATAACAGAGC-ACA 2216
Query 2307 ATCATTGGCTTTCCAG-TTAACCGAGAAACTCTCGATTTTGGCAGAAAGCAATGAAAGGG 2365
||| |||||||| ||| ||| |||| |||||| ||| | | ||||||||||| ||||| |
Sbjct 2217 ATCCTTGGCTTTTCAGATTA-CCGAAAAACTCGCGACTCTAGCAGAAAGCAACGAAAGTG 2275
Query 2366 CAATGGAATCTAGAACCGGTGGAGGTGGTGTGGATCTGAGCT-CAAGGAGAAGGGACAAC 2424
||||||| |||| ||| ||||| | ||| | ||| ||| || ||||||||||||| |||
Sbjct 2276 CAATGGAGTCTAAAACTGGTGGTGTTGGCCTTGATATGA-CTTCAAGGAGAAGGGAAAAC 2334
Query 2425 AATCAAGACTATGCAGGAGCAGCATCAG 2452
| ||| |||||||||| |||||||||||
Sbjct 2335 AGTCAGGACTATGCAGCAGCAGCATCAG 2362
Score = 246 bits (133), Expect = 8e-64
Identities = 394/511 (77%), Gaps = 54/511 (11%)
Strand=Plus/Plus
Query 6 GACGTCTCGTTTTTTCGCTCAGGGTGGAAGTGAAAGTGAAGATGAGAGTGA-TTATGAAG 64
||| |||||||||||||||||| |||||||||||||||||||||||||||| || ||||
Sbjct 9 GACTTCTCGTTTTTTCGCTCAGAGTGGAAGTGAAAGTGAAGATGAGAGTGACTT-TGAA- 66
Query 65 AAGAGGTTAATGAGGTTCAGAATGACGACGTCACTAACCGTTACCTT-CAAAGTGG--T- 120
|| || || |||||| || | || || ||| | |||||||| || | | |
Sbjct 67 AA-AG---AA-GAGGTTGAGGGTAACAAC---ACT--C-GTTACCTTGCAGACTTACCTG 115
Query 121 A-G-TGAGGATGACTTG-GATATCGATACCAAACGTGTGGTTAAGCCTGCCAAAGATAAA 177
| | |||| || ||| | ||| ||||| ||||||||||||||||| |||||||||
Sbjct 116 ACGGTGAG-ATTTGTTGTGGTATGGATACTAAACGTGTGGTTAAGCCAAAAAAAGATAAA 174
Query 178 CGTTTTGAGGAGATGACCTACACTGTTGAGCAGATGAAGAATGCTATGAAGATTAATGAT 237
||||||||||||||| || ||||| | ||| | |||||| |||| ||||| || ||||||
Sbjct 175 CGTTTTGAGGAGATGGCCAACACTATAGAGAATATGAAGCATGCCATGAACATCAATGAT 234
Query 238 TGGGTT-AGCCTT-CAAGAAAAC-TTTGATAAGGTTAACAAACAGCTTGAGAAGGTTATG 294
|| ||| | | || ||||||| | ||||| || | ||||||||| || || | |
Sbjct 235 TGTGTTTA-C-TTGCAAGAAA-CGTTTGAGAAACTCAACAAACAGATT-AG----T-A-- 283
Query 295 AGGATTACTGAGGCTGTCAAGCCTCCTACCTTGTATATCAAGACTCTTGTTATGTTGGAG 354
|| | | | || ||| |||| || |||||||||||||| ||||| ||||||||
Sbjct 284 AG--T--C-----C-GTAAAGACTCCGACTTTGTATATCAAGACCCTTGTGATGTTGGAA 333
Query 355 GATTTCTTGATTGAAGCCCTTGCGAATAAGGAAGCCAAGAAGAAGATGAGCACTAGTAAC 414
|||||||||| ||||| | |||| | || | ||| |||||||||| |||||||||
Sbjct 334 GATTTCTTGAATGAAGA--T----AATATGAAAACAAAGGAGAAGATGAGTACTAGTAAC 387
Query 415 TCCAAGGCTTTGAACTCTATGAAACAGAAACTGAAGAAGAACAATAAGCTGTACGAAGAT 474
||||||||||||||| | |||| |||||||||||||||||||||| || |||| ||||
Sbjct 388 TCCAAGGCTTTGAACGCAATGAGACAGAAACTGAAGAAGAACAATCTGCAGTACCAAGAA 447
Query 475 GATATCAACAA-ATATCGTGAGTCTCCAGAA 504
|||||||| || || | | ||||||||||||
Sbjct 448 GATATCAA-AAGATTTAGGGAGTCTCCAGAA 477
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 142323617291
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5