BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg486057 Length=1336 Score E Sequences producing significant alignments: (Bits) Value AT3G56160.1 | Symbols: | Sodium Bile acid symporter family | c... 1736 0.0 > AT3G56160.1 | Symbols: | Sodium Bile acid symporter family | chr3:20837444-20841541 REVERSE LENGTH=1600 Length=1600 Score = 1736 bits (940), Expect = 0.0 Identities = 1049/1101 (95%), Gaps = 9/1101 (1%) Strand=Plus/Plus Query 195 TCTTGGTGGTGACGGAGCCATTTCAGCTTCAGCTCAAAGATT-TCATTTTGGCAAGGAAT 253 ||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||| Sbjct 243 TCTTGGTGGTGACGGAGGCATTTCAGCTTCAGCTCAAAGATTAT-ATTTTGGCAAGGAAT 301 Query 254 TTATGAGTTTTGTTTCAGATAATTTCTTGCCTCTTGCTCTTGTTAGTGGAGTGGCTTTGG 313 | ||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||| Sbjct 302 TGCTGAGTTTTGCTTCAGATAATTTCTTGCCTCTAGCTCTTGTTAGTGGAGTGGGGTTGG 361 Query 314 GCTTTGCAAATCCAACTCTAGGCTGTCTTGCAGACAAATACTCTTTCACTAAGATCAGCA 373 ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 362 GCTTTGCAAATCCGACTCTAGGCTGTCTTGCAGACAAGTACTCTTTCACTAAGATCAGCA 421 Query 374 CATGTGGGATATTTATTATATCAGGGTTGACTTTACGTACTGAAGCGATTGGTGCTGCTG 433 |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 422 CATGCGGGATATTTATTATATCAGGGTTGACTTTACGTACCGAAGCGATTGGTGCTGCTG 481 Query 434 TCAAAGGATGGCCTCTTGGAGTCTTTGGGCTAATCTCTATTTTGTTGCTCACTCCATCCT 493 ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 482 TCAAAGGGTGGCCTCTTGGACTCTTTGGGCTAATCTCTATTTTGTTGCTCACTCCATCCT 541 Query 494 TCTCAAGGCTAATTATGCTGGTCCAACTCCAACCTCGTGAACTTGTTACAGGGCTGGGTA 553 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 542 TCTCAAGGCTAATTATGTTGGTCCAACTCCAACCTCGTGAACTTGTTACAGGGCTGGGTA 601 Query 554 TATTTTGCTGTATGCCAACTACCTTATCAAGTGGTGTTGCCCTTACTCACCTTGCTGGTG 613 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 602 TATTTTGCTGTATGCCAACCACCTTATCAAGTGGTGTTGCCCTTACTCACCTTGCTGGTG 661 Query 614 GCAATGCTGCTCTTGCTCTTGCTGTGACAGTGGCGTCTAACTTGTTAGGAATTTTAACTA 673 | |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct 662 GTAATGCTGCTCTTGCTCTTGCTGTGACAGTGGCATCTAACTTATTAGGAATTTTAACTA 721 Query 674 TTCCATTTTGGGTATCAAGATACATAGCCGGGGGAGTTGGGGTTTCGTTTCCTACTGACC 733 |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 722 TTCCATTTTGGGTATCAAGATACATAGCTGGGGGAGTAGGGGTTTCGTTTCCTACTGACC 781 Query 734 AACTATTCAGAAGTCTTATAGTTACTCTGTTAATTCCTTTAATCATTGGCAAGGTTATTC 793 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 782 AACTATTCAGAAGTCTTATAGTTACTCTGTTAATTCCTTTAATCATTGGCAAGGTTATTC 841 Query 794 GAGAATCATTTAAAGGTTTCGCAAACTTTGTTGACAATAACCGTAAACTCTTTTCGAAAA 853 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 842 GAGAATCATTCAAAGGTTTCGCAAACTTTGTTGACAATAACCGTAAACTCTTTTCGAAAA 901 Query 854 TCAATGCAATCTGCCTCAGTTTGGTGCCATGGATCCAAGTGAGCAGGTCAAGATCACTGC 913 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 902 TCAACGCAATCTGCCTCAGTTTGGTGCCATGGATCCAAGTGAGCAGGTCAAGATCACTGC 961 Query 914 TACTATCCGTT-AAGCCTAAGGTGTTTC-TTGCTGCTGTTGGCATTGGAATATTGCTGCA 971 ||||||||||| || |||||||| |||| |||| || ||||||||||||||||||||||| Sbjct 962 TACTATCCGTTCAA-CCTAAGGT-TTTCCTTGCAGCAGTTGGCATTGGAATATTGCTGCA 1019 Query 972 TCTTTCTCTACTAGCATTCAATGCTGTTTCAATCCGCATCCTCTCGGGTGTTTCAGGTGG 1031 ||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||| Sbjct 1020 TCTTTCTCTACTAGCATTCAATGCTGTTTCAATCCGCATCCTCTCCGGTCTTACAGGTGG 1079 Query 1032 TAGTAAGAACTCCAAGGAAAACAGCACTGCAGTCTTGCTCGTTTCAAGCCAGAAAACATT 1091 ||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1080 TAGCAAGAGCTCCAAGGAAAACAGCACTGCAGTTTTGCTCGTTTCAAGCCAGAAAACATT 1139 Query 1092 ACCTGTAATGGTGGCGGTAGTAGAGCAATTAGGAGGTGCATTTGGTGAGACAGGGCTTTT 1151 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1140 ACCGGTAATGGTGGCGGTAGTAGAGCAATTAGGAGGTGCATTTGGTGAGACAGGGCTATT 1199 Query 1152 GGTTCTTCCATGTGTAGCTGCACACCTAAACCAGATCATGATTGATTCAGTTCTTGTCAA 1211 ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1200 GGTTCTTCCTTGTGTAGCTGCACACCTGAACCAGATCATGATTGATTCAGTTCTTGTCAA 1259 Query 1212 CTTATGGCTCCGGAGGGGTAAAGATACTTCGACTGGTGTAAAGACAGCCTGAGAGATATA 1271 ||||||||||||||| || ||||||||||||||| ||||||||||| ||||||| | | Sbjct 1260 CTTATGGCTCCGGAGAGGAAAAGATACTTCGACTAAAGTAAAGACAGCTTGAGAGAGAGA 1319 Query 1272 GA-A-AGATATGAAACCAATG 1290 || | ||||| |||| ||||| Sbjct 1320 GAGAGAGATA-GAAAGCAATG 1339 Score = 235 bits (127), Expect = 8e-61 Identities = 155/169 (92%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 1 ATGGCGATAGCTAGTATCCTGGCTTCAACCCAAAACCCCTTTTTACGTCTAAGTCAACCA 60 |||||||||||||||| ||||||||||||||||||||||||| || |||| |||||||| Sbjct 1 ATGGCGATAGCTAGTACCCTGGCTTCAACCCAAAACCCCTTTCTATGTCTCCGTCAACCA 60 Query 61 CCATCTCCGGTGAGCCGCTCCGTCGTCTTCCGCCGCTATCTAGAGCCCTGTGGCAGACGA 120 || ||||||| || |||||||||||||||||| |||| || ||| |||||||| |||||| Sbjct 61 CCGTCTCCGGGGAACCGCTCCGTCGTCTTCCGTCGCTGTCAAGACCCCTGTGGTAGACGA 120 Query 121 TGGATTCCCAGATCCATTAGAGCATGCCAACCTTCCGACAAGGTCTCTG 169 |||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TGGATTTCCAGATCCATTAGAGCATGCCAACCTTCCGACAAGGTCTCTG 169 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65762713950 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5