BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486057
Length=1336
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56160.1 | Symbols: | Sodium Bile acid symporter family | c... 1736 0.0
> AT3G56160.1 | Symbols: | Sodium Bile acid symporter family |
chr3:20837444-20841541 REVERSE LENGTH=1600
Length=1600
Score = 1736 bits (940), Expect = 0.0
Identities = 1049/1101 (95%), Gaps = 9/1101 (1%)
Strand=Plus/Plus
Query 195 TCTTGGTGGTGACGGAGCCATTTCAGCTTCAGCTCAAAGATT-TCATTTTGGCAAGGAAT 253
||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||
Sbjct 243 TCTTGGTGGTGACGGAGGCATTTCAGCTTCAGCTCAAAGATTAT-ATTTTGGCAAGGAAT 301
Query 254 TTATGAGTTTTGTTTCAGATAATTTCTTGCCTCTTGCTCTTGTTAGTGGAGTGGCTTTGG 313
| ||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 302 TGCTGAGTTTTGCTTCAGATAATTTCTTGCCTCTAGCTCTTGTTAGTGGAGTGGGGTTGG 361
Query 314 GCTTTGCAAATCCAACTCTAGGCTGTCTTGCAGACAAATACTCTTTCACTAAGATCAGCA 373
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 362 GCTTTGCAAATCCGACTCTAGGCTGTCTTGCAGACAAGTACTCTTTCACTAAGATCAGCA 421
Query 374 CATGTGGGATATTTATTATATCAGGGTTGACTTTACGTACTGAAGCGATTGGTGCTGCTG 433
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 422 CATGCGGGATATTTATTATATCAGGGTTGACTTTACGTACCGAAGCGATTGGTGCTGCTG 481
Query 434 TCAAAGGATGGCCTCTTGGAGTCTTTGGGCTAATCTCTATTTTGTTGCTCACTCCATCCT 493
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 482 TCAAAGGGTGGCCTCTTGGACTCTTTGGGCTAATCTCTATTTTGTTGCTCACTCCATCCT 541
Query 494 TCTCAAGGCTAATTATGCTGGTCCAACTCCAACCTCGTGAACTTGTTACAGGGCTGGGTA 553
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 TCTCAAGGCTAATTATGTTGGTCCAACTCCAACCTCGTGAACTTGTTACAGGGCTGGGTA 601
Query 554 TATTTTGCTGTATGCCAACTACCTTATCAAGTGGTGTTGCCCTTACTCACCTTGCTGGTG 613
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 602 TATTTTGCTGTATGCCAACCACCTTATCAAGTGGTGTTGCCCTTACTCACCTTGCTGGTG 661
Query 614 GCAATGCTGCTCTTGCTCTTGCTGTGACAGTGGCGTCTAACTTGTTAGGAATTTTAACTA 673
| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 662 GTAATGCTGCTCTTGCTCTTGCTGTGACAGTGGCATCTAACTTATTAGGAATTTTAACTA 721
Query 674 TTCCATTTTGGGTATCAAGATACATAGCCGGGGGAGTTGGGGTTTCGTTTCCTACTGACC 733
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 722 TTCCATTTTGGGTATCAAGATACATAGCTGGGGGAGTAGGGGTTTCGTTTCCTACTGACC 781
Query 734 AACTATTCAGAAGTCTTATAGTTACTCTGTTAATTCCTTTAATCATTGGCAAGGTTATTC 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 AACTATTCAGAAGTCTTATAGTTACTCTGTTAATTCCTTTAATCATTGGCAAGGTTATTC 841
Query 794 GAGAATCATTTAAAGGTTTCGCAAACTTTGTTGACAATAACCGTAAACTCTTTTCGAAAA 853
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 GAGAATCATTCAAAGGTTTCGCAAACTTTGTTGACAATAACCGTAAACTCTTTTCGAAAA 901
Query 854 TCAATGCAATCTGCCTCAGTTTGGTGCCATGGATCCAAGTGAGCAGGTCAAGATCACTGC 913
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 TCAACGCAATCTGCCTCAGTTTGGTGCCATGGATCCAAGTGAGCAGGTCAAGATCACTGC 961
Query 914 TACTATCCGTT-AAGCCTAAGGTGTTTC-TTGCTGCTGTTGGCATTGGAATATTGCTGCA 971
||||||||||| || |||||||| |||| |||| || |||||||||||||||||||||||
Sbjct 962 TACTATCCGTTCAA-CCTAAGGT-TTTCCTTGCAGCAGTTGGCATTGGAATATTGCTGCA 1019
Query 972 TCTTTCTCTACTAGCATTCAATGCTGTTTCAATCCGCATCCTCTCGGGTGTTTCAGGTGG 1031
||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||
Sbjct 1020 TCTTTCTCTACTAGCATTCAATGCTGTTTCAATCCGCATCCTCTCCGGTCTTACAGGTGG 1079
Query 1032 TAGTAAGAACTCCAAGGAAAACAGCACTGCAGTCTTGCTCGTTTCAAGCCAGAAAACATT 1091
||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1080 TAGCAAGAGCTCCAAGGAAAACAGCACTGCAGTTTTGCTCGTTTCAAGCCAGAAAACATT 1139
Query 1092 ACCTGTAATGGTGGCGGTAGTAGAGCAATTAGGAGGTGCATTTGGTGAGACAGGGCTTTT 1151
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1140 ACCGGTAATGGTGGCGGTAGTAGAGCAATTAGGAGGTGCATTTGGTGAGACAGGGCTATT 1199
Query 1152 GGTTCTTCCATGTGTAGCTGCACACCTAAACCAGATCATGATTGATTCAGTTCTTGTCAA 1211
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1200 GGTTCTTCCTTGTGTAGCTGCACACCTGAACCAGATCATGATTGATTCAGTTCTTGTCAA 1259
Query 1212 CTTATGGCTCCGGAGGGGTAAAGATACTTCGACTGGTGTAAAGACAGCCTGAGAGATATA 1271
||||||||||||||| || ||||||||||||||| ||||||||||| ||||||| | |
Sbjct 1260 CTTATGGCTCCGGAGAGGAAAAGATACTTCGACTAAAGTAAAGACAGCTTGAGAGAGAGA 1319
Query 1272 GA-A-AGATATGAAACCAATG 1290
|| | ||||| |||| |||||
Sbjct 1320 GAGAGAGATA-GAAAGCAATG 1339
Score = 235 bits (127), Expect = 8e-61
Identities = 155/169 (92%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 1 ATGGCGATAGCTAGTATCCTGGCTTCAACCCAAAACCCCTTTTTACGTCTAAGTCAACCA 60
|||||||||||||||| ||||||||||||||||||||||||| || |||| ||||||||
Sbjct 1 ATGGCGATAGCTAGTACCCTGGCTTCAACCCAAAACCCCTTTCTATGTCTCCGTCAACCA 60
Query 61 CCATCTCCGGTGAGCCGCTCCGTCGTCTTCCGCCGCTATCTAGAGCCCTGTGGCAGACGA 120
|| ||||||| || |||||||||||||||||| |||| || ||| |||||||| ||||||
Sbjct 61 CCGTCTCCGGGGAACCGCTCCGTCGTCTTCCGTCGCTGTCAAGACCCCTGTGGTAGACGA 120
Query 121 TGGATTCCCAGATCCATTAGAGCATGCCAACCTTCCGACAAGGTCTCTG 169
|||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGGATTTCCAGATCCATTAGAGCATGCCAACCTTCCGACAAGGTCTCTG 169
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65762713950
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5