BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486059
Length=827
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56180.1 | Symbols: | Protein of unknown function (DUF567) ... 1314 0.0
> AT3G56180.1 | Symbols: | Protein of unknown function (DUF567)
| chr3:20844667-20845692 FORWARD LENGTH=857
Length=857
Score = 1314 bits (711), Expect = 0.0
Identities = 798/837 (95%), Gaps = 17/837 (2%)
Strand=Plus/Plus
Query 1 CTTCATCATCACGAGGATTATCAAGGGCTCTCAAA-CAAGAGTCTTTCATAATCTTTTGC 59
||||||||||| ||||||||||||||||||| ||| ||||| |||||||| ||||||||
Sbjct 1 CTTCATCATCAGGAGGATTATCAAGGGCTCT-AAATAAAGAGCCTTTCATAGTCTTTTGC 59
Query 60 AA---TCTTC-T--TCTTCTTCTTG-A-TATTATTCGAAAATGCCGAAGAATaaaaaaaC 111
|| ||||| | ||||||||||| | | ||||||||||||||||||||||||||||||
Sbjct 60 AATCTTCTTCTTCGTCTTCTTCTTGAACT-TTATTCGAAAATGCCGAAGAATAAAAAAAC 118
Query 112 AGAATGGCAAGTAGGAGATCCCGCAATAAGCGTAGTGAGCGATCAATTCTGTAATCCATA 171
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 119 AGAATGGCAAGTAGGAGATCCCGCGATAAGCGTAGTGAGCGATCAATTCTGTAATCCATA 178
Query 172 CCCAATGGATCTTGTGGTGAAGAGAAAAGTTCAGAATTTTTCTAAAGATTATTATGAAGT 231
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 CCCAATGGATCTTTTGGTGAAGAGAAAAGTTCAGAATTTTTCTAAAGATTATTATGAAGT 238
Query 232 TTTTGATCCAAGTGGGAACCTGCTCTTACAAATTGATGGACAAGCTTGGGGATTTAACCG 291
||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||
Sbjct 239 GTTTGATCCAAGTGGGAATCTGCTCCTACAAATTGATGGACAAGCTTGGGGGTTTAACCG 298
Query 292 TAAAAGAGTTATGCGTGATCCAGCCGGTTTCACAATCCTCTCAATGCGCCAAAAGGGACT 351
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 299 TAAAAGAGTTATGCGTGATCCAGCCGGTTTCACAATCCTCTCAATGCGTCAAAAGGGACT 358
Query 352 TGCGTTGAAGAACAAGTGGGAAGTGCATGGAGGAGAGAGCAAAGAGAGAGAAGACTTGCT 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TGCGTTGAAGAACAAGTGGGAAGTGCATGGAGGAGAGAGCAAAGAGAGAGAAGACTTGCT 418
Query 412 CTTCACGGTACAACAATCTCAAGCGGTTTCATTGAAAACATCCGTGGATGTTTTCTTGCC 471
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 419 CTTCACGGTACAACAATCTCAAGCGGTTTCACTGAAAACATCCGTGGATGTTTTCTTGCC 478
Query 472 TGAGAACAACAATGTCAAGAAGAGCAA-CACTTGTGATTTCCATGCTTCAGGAGGATACT 530
|||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||
Sbjct 479 GGAGAACAACAATGTCAAGAAGA-CAAACACTTGTGATTTTCATGCTTCAGGAGGATACT 537
Query 531 CCAATATCTCATTCAAAGTTTTCAAATCGGATGCTCTCATCGCCGGGGTAGGGTTTACAT 590
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 538 CCAATATCTCATTCAAAGTTTTCAAAGCGGATGCTCTCATCGCCGGGGTAGGGTTTACAT 597
Query 591 GGGGAAGTTTCTGCAAAGGGAAATATAATTTTAAGGTGAGAGTGAATCCAGAGGTTGATT 650
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 598 GGGGAAGTTTCTGCAAAGGGAAATATAACTTTAAGGTGAGAGTAAATCCAGAGGTTGATT 657
Query 651 ATGCTTTTATCATTGCTTTGCTTGTTATGGTCGATGACAACGAGAACTGGTGTTAGTATA 710
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 658 ATGCTTTTATCATTGCTTTGCTTGTCATGGTCGATGACAACGAGAATTGGTGTTAGTATA 717
Query 711 ATGTCTGTCCTCAATCTCTTTGTTTAGTGGTTCCTTTCACAATTTATTGTTGTATGTATA 770
|||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 718 TTGTCTGTCCTCAATCTCTTTGTTTAGTGGTTCCTTTCACAATTTATTG--GT--GTATA 773
Query 771 TGTGTTCATTTCTCAAGATATATGTTTGTAAGAATATTTTTTCCATGTAACGTGCAA 827
||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 774 TGTGTTCATTTCTCAAGATATATGTATGTAAGAATATTTTTTCCATGTAATGTGCAA 830
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40287785894
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5