BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486060
Length=1254
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56190.1 | Symbols: ALPHA-SNAP2, ASNAP | alpha-soluble NSF a... 1993 0.0
AT3G56450.1 | Symbols: ALPHA-SNAP1 | alpha-soluble NSF attachme... 614 8e-175
> AT3G56190.1 | Symbols: ALPHA-SNAP2, ASNAP | alpha-soluble NSF
attachment protein 2 | chr3:20845674-20848526 REVERSE LENGTH=1485
Length=1485
Score = 1993 bits (1079), Expect = 0.0
Identities = 1203/1261 (95%), Gaps = 15/1261 (1%)
Strand=Plus/Plus
Query 1 TCTGATTTTTCGCTCTCGATCGATTCTCG-C-CTCTCTC--TCATCGCAGCGAAT-ATCC 55
||||||||||||||||||||||||||||| | ||||||| |||||||||||||| ||||
Sbjct 2 TCTGATTTTTCGCTCTCGATCGATTCTCGTCTCTCTCTCTTTCATCGCAGCGAATAATCC 61
Query 56 AAATCGAAAGCAATTTCTCTCGACGAAGAAAAGAG-AGACAATCGGAGTCTGGGGAGGTA 114
||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||
Sbjct 62 AAATCGAAAGCAATTTCTCTCGACGAAGAAAAGAGAAG-CAATCGGAGTCTGTGGAGGTA 120
Query 115 AAGAAGTACACGATCGGAGGTTGAATTTCAAGTCAGAGTTTCGGGGaaaaaaaaGAAATG 174
||||||||||||||| | |||||||||||||||||||||||||||||||| ||||
Sbjct 121 AAGAAGTACACGATC--A-----AATTTCAAGTCAGAGTTTCGGGGAAAAAAAAGGAATG 173
Query 175 GGGGATCATCTGGTGAGAGCTGAGGAATTCGAGAAGAAAGCTGAGAAGAAGCTCAATGGA 234
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 174 GGGGATCATCTGGTGAGAGCTGAGGAATTCGAGAAGAAAGCTGAGAAAAAGCTCAATGGA 233
Query 235 TGGGGAATATTCGGATCTAAGTATGAGGATGCTGCTGATCTGCTCGAAAAAGCAGCTAAT 294
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 234 TGGGGAATATTCGGATCTAAGTACGAGGATGCTGCTGATCTGCTCGAAAAAGCAGCTAAT 293
Query 295 TCCTATAAGCTCGCCAAATCATGGGATCAAGCTGGAAAAGCTTATCTAAAACTTGCCGAT 354
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 TCCTATAAGCTCGCCAAATCATGGGATCAAGCTGGAAAAGCTTATCTAAAACTTGCCGAC 353
Query 355 TGTCACTTAAAGTCAGACAGCAAACATGATGCTGCTAACGCCTATGCTGAGGCTGCTAAA 414
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 TGTCACTTAAAGTCAGATAGCAAACATGATGCTGCTAACGCCTATGCTGAGGCTGCTAAA 413
Query 415 TGCTACAAGAAAGTTGACACAAATGAGGCTGCATCTTGCCTAGAGCGAGCAGTGAATATA 474
|||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||
Sbjct 414 TGCTACAAGAAAGTTGACACTAATGAGGCTGCGTCTTGCCTAGAGCGAGCGGTGAATATA 473
Query 475 TTTTGTGAGATAGGAAGGCTCAACATGGCTGCAAGATATTACAAGGAAATTGCTGAGTAT 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 TTTTGTGAGATAGGAAGGCTCAACATGGCTGCAAGATATTACAAGGAAATTGCTGAGTAT 533
Query 535 TATGAATCTGATCAGAAGTTCGAGCAGGCTATTGCTTACTTTGAAAAGGCAGCTGAATTC 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 TATGAATCTGATCAGAAGTTCGAGCAGGCTATTGCTTACTTTGAAAAGGCAGCTGAATTC 593
Query 595 TTTCAAAATGAAGAAGTGACCACTTCTGCAAACCAGTGCAATCTAAAGGTTGCACAATAT 654
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 594 TTTCAGAATGAAGAAGTGACCACTTCTGCAAACCAGTGCAATCTAAAGGTTGCGCAATAT 653
Query 655 GCTGCACAGCTGGAGCAATATGAGAAGGCAATCAAGATTTATGAAGATATAGCACGCCAT 714
|| || ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 654 GCCGCCCAGCTGGAGCAGTATGAGAAGGCAATCAAGATTTATGAAGACATAGCACGCCAT 713
Query 715 TCACTCAACAATAACTTGCTTAAGTATGGAGTTAAGGGCCATCTTCTCACTGCTGGCATG 774
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 714 TCACTCAACAATAACTTGCTCAAGTATGGAGTTAAGGGCCATCTTCTCACTGCTGGCATG 773
Query 775 TGCCACTTATGCAAAGCTGATGTTGTTTCCATCACTAATGCGCTGGAGAAATACCAGGAT 834
||||||||||||||||| |||||||||||||||||||| || |||||||| || ||||||
Sbjct 774 TGCCACTTATGCAAAGCCGATGTTGTTTCCATCACTAACGCTCTGGAGAAGTATCAGGAT 833
Query 835 CTGGATCCGACTTTTTCAGGAACACGGGAATGCAAGTTCTTAGCGGATCTTGCTTCTGCT 894
|||||||| |||||| | ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 834 CTGGATCCAACTTTTACTGGAACACGGGAATGCAAGTTCTTAGCGGACCTTGCTTCTGCT 893
Query 895 ATCGATGAGGAAGACATTGCAAAGTTCACAGACGTTGTCAAGGAATTTGATAGCATGACT 954
|||||||| |||||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 894 ATCGATGAAGAAGACATCGCAAAGTTCACAGATGTTGTCAAGGAGTTTGATAGCATGACT 953
Query 955 CCACTGGATTCATGGAAGACAACCATGTTGTTGAGGGTGAAGGAGAAGCTCAAGGCCAAG 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 CCACTGGATTCATGGAAGACAACCATGTTGTTGAGGGTGAAGGAGAAGCTCAAGGCCAAG 1013
Query 1015 GAGCTGGAGGAGGATGACCTTACCTAAACATATATATCCAGAGCGTTGCTTTTTAGTCAT 1074
||||| ||||||||||||||||| || |||||| ||||||||||||||||||||| ||||
Sbjct 1014 GAGCTAGAGGAGGATGACCTTACATAGACATATTTATCCAGAGCGTTGCTTTTTATTCAT 1073
Query 1075 TCCCGGTTTGTATTGTCACTATGTCCGTTACTTCATATCCGACTCTTCTTTGATTTTATT 1134
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1074 TCCCGGGTTGTATTGTCACTATGTCCGTTACTTCATGTCCGACTCTTCTTTGATTTTATT 1133
Query 1135 GTGTCTGGTTTTG-GTTTTAAGGTTTCTTAAGAGGTTTGGTCAAATTGGGTTTGTTTGGT 1193
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1134 GTGTCTGGTTTTGAGTTTTAAAGTTTCTTAAGAGGTTTGGTCAAATTGGGTTTGTTTGGT 1193
Query 1194 ATCAACGTCTACATTTGTTCTCTGTTTCTCATCACTTCATTTATGGGAACTTCTCAAGTC 1253
||| ||||||||| |||||||||| |||| |||||||||||||||||||| ||||||||
Sbjct 1194 ATCGACGTCTACAATTGTTCTCTGCGTCTCGTCACTTCATTTATGGGAACTACTCAAGTC 1253
Query 1254 T 1254
|
Sbjct 1254 T 1254
> AT3G56450.1 | Symbols: ALPHA-SNAP1 | alpha-soluble NSF attachment
protein 1 | chr3:20930557-20932869 FORWARD LENGTH=1146
Length=1146
Score = 614 bits (332), Expect = 8e-175
Identities = 410/445 (92%), Gaps = 15/445 (3%)
Strand=Plus/Plus
Query 520 GAAATTGCTGAGTATTATGAATCTGATCAGAAGTTCGAGCAGGCTATTGCTTACTTTGAA 579
||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||| ||||
Sbjct 511 GAAATTGCTGAGTATTATGAATCTGATGAGATGTTCGAGCAAGCTATTGCTTACTATGAA 570
Query 580 AAGGCAGCTGAATTCTTTCAAAAT-GAAGAAGTGACCACTTCTGCAAACCAGTGCAATCT 638
| ||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||
Sbjct 571 ACGGCAGCTGAATTCTTTC-AAATAGAAGAAGTGACCACCTCTGCAAACCAGTGCAATCT 629
Query 639 AAAGGTTGCACAATATGCTGCACAGCTGGAGCAATATGAGAAGGCAATCAAGATTTATGA 698
||||||||||||||||||| | | | ||| || ||| | |||||| ||||||||||
Sbjct 630 AAAGGTTGCACAATATGCTTC-C--C---AGC--TA-GAGCA-GCAATCCAGATTTATGA 679
Query 699 AGATATA-GCACGCCATTCACTCAACAATAACTTGCTTAAGTATGGAGTTAAGGGCCATC 757
||| | | ||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 680 AGACACAGGCACGCCATTCACTCAACAATAAGTTGCTTAAGTATGGAGTTAAAGGCCATC 739
Query 758 TTCTCACTGCTGGCATGTGCCACTTATGCAAAGCTGATGTTGTTTCCATCACTAATGCGC 817
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 740 TTCTCACTGCTGGCATGTGCCACTTATGCAAAGCTGATGTTGTTTCCATCACTAATGCAC 799
Query 818 TGGAGAAATACCAGGATCTGGATCCGACTTTTTCAGGAACACGGGAATGCAAGTTCTTAG 877
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 800 TGGAGAAATATCAGGATCTGGATCCGACTTTTTCAGGAACACGGGAATGCAAGTTCTTAG 859
Query 878 CGGATCTTGCTTCTGCTATCGATGAGGAAGACATTGCAAAGTTCACAGACGTTGTC-AAG 936
|||| |||||||||||||||||||| ||||||||||||||||||||||||||| || |||
Sbjct 860 CGGACCTTGCTTCTGCTATCGATGAAGAAGACATTGCAAAGTTCACAGACGTT-TCCAAG 918
Query 937 GAATTTGATAGCATGACTCCACTGG 961
||| |||||||| ||| ||||||||
Sbjct 919 GAAATTGATAGCGTGAGTCCACTGG 943
Score = 209 bits (113), Expect = 4e-53
Identities = 150/167 (90%), Gaps = 5/167 (3%)
Strand=Plus/Plus
Query 202 TTCGAGAAGAAAGCTGAGAAGAAGCTCAATGGATGGGGAATATTCGGA-TCTAAGTATGA 260
||| |||||||||||||||||||||| || || || ||| |||| || ||||||| ||
Sbjct 296 TTC-AGAAGAAAGCTGAGAAGAAGCTTAACAGACGGAGAAGATTC-GACACTAAGTACGA 353
Query 261 GGATGCTGCTGATCTGCTCGAAAAAGCAGC-TAATTCCTATAAGCTCGCCAAATCATGGG 319
||||||||||||||||||||| |||||| | | ||||||||||||| |||||||||||||
Sbjct 354 GGATGCTGCTGATCTGCTCGAGAAAGCA-CGTGATTCCTATAAGCTTGCCAAATCATGGG 412
Query 320 ATCAAGCTGGAAAAGCTTATCTAAAACTTGCCGATTGTCACTTAAAG 366
|||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 413 ATCAAGCTGGAATAGCTTATCTAAAACTTGCCGATTGTCACTTAAAG 459
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61646269260
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5