BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486062
Length=1601
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56200.1 | Symbols: | Transmembrane amino acid transporter ... 2490 0.0
AT2G40420.1 | Symbols: | Transmembrane amino acid transporter ... 811 0.0
> AT3G56200.1 | Symbols: | Transmembrane amino acid transporter
family protein | chr3:20850029-20852027 FORWARD LENGTH=1614
Length=1614
Score = 2490 bits (1348), Expect = 0.0
Identities = 1519/1603 (95%), Gaps = 5/1603 (0%)
Strand=Plus/Plus
Query 1 AAAAAGAAAAGCTTCTTCCCGCCGGCAAATTCTTAAGTTTCTCCGGCGGTTAGAAAAATG 60
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2 AAAAAGGAAAGCTTCTTCCCGCCGGCAAATTCTTACGTTTCTCCGGCGGTTAGAAAAATG 61
Query 61 TCACCACAGATCAAAACTCATCTCTTGCCTAAGCAAGAACCTTCGTCGTCTGAGAACCAT 120
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 62 ACACCACAGATCAAAACTCATCTCTTGCCGAAGCAAGAACCTTCTTCGTCTGAGAACCAT 121
Query 121 GGATCATCAACCTCCGGCATCGTTTTCAACGTGTCTACGAGTATAATCGGAGCCGGAATA 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 122 GGATCATCAACCTCCGGCATCGTTTTCAACGTGTCAACGAGTATAATCGGAGCCGGAATA 181
Query 181 ATGTCGATGCCGGCGGCGTTTAAGGTTCTTGGAATAGTCCCAGCGTTTTTGATTATCACG 240
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 182 ATGTCGATGCCGGCGGCGTTTAAAGTTCTTGGAATAGTTCCAGCGTTTTTGATTATCACG 241
Query 241 ATCATAGCTTGGCTTTCCACCATTTCTGTTGGATTTCTAATGAAATCAACACTCGCCGGA 300
|||||||||||||||||||| ||||| ||||||||||| ||||||||||| |||||||||
Sbjct 242 ATCATAGCTTGGCTTTCCACAATTTCCGTTGGATTTCTGATGAAATCAACTCTCGCCGGA 301
Query 301 GAATCAACTACTTACGCCGGAGTCATGAAAGAGTCGTTCGGAAAAACAGGATCCGTCGCT 360
||||||||||||||||||||||| |||||||||||||| || |||||||||||| |||||
Sbjct 302 GAATCAACTACTTACGCCGGAGTTATGAAAGAGTCGTTTGGTAAAACAGGATCCATCGCT 361
Query 361 GCACAGATTGCTACGATGGTTGCTACTTTTGGATGTATGATTGTCTTTTCGATTATTATA 420
| |||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||
Sbjct 362 GTACAGATTGCTACGATGGTTGCTACTTTTGGTTGTATGATTATATTTTCGATTATTATA 421
Query 421 GGCGATGTGCTTTCGGGTAATGAAAATGGAGGAT-CTCAACATCTTGGAGTTTCGCAAGA 479
|| ||||||||||| |||||||||||||| || | || ||||| ||||||||| ||||||
Sbjct 422 GGAGATGTGCTTTCTGGTAATGAAAATGGTGG-TCCTGAACATATTGGAGTTTTGCAAGA 480
Query 480 ATGGTTTGGTTCTTACTGGTGGAACACGAGAATCTTCGCTTTGTTGTTCATTTACTGCTT 539
||||||||||||||||||||||||||||||||||||||||||||| || | ||| ||||
Sbjct 481 ATGGTTTGGTTCTTACTGGTGGAACACGAGAATCTTCGCTTTGTTATTTGTCTACGGCTT 540
Query 540 TGTCTTGCTTCCATTGGTCTTGTGTAGACGTGTCGAAAGACTGGCATTTAGTTCAGCGGT 599
||||||||||||||||||| || ||||||| ||||||||||||||| ||||||| || ||
Sbjct 541 TGTCTTGCTTCCATTGGTCCTGCGTAGACGAGTCGAAAGACTGGCAATTAGTTCCGCTGT 600
Query 600 TTCGTTTCTTCTTGCGGTTCTATTTGTTGTCATAAGCTCGGTGCTGGCGATTTCCGCGCT 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATCGTTTCTTCTTGCGGTTCTATTTGTTGTCATAAGCTCGGTGCTGGCGATTTCCGCGCT 660
Query 660 GGTGAATGGACAAACGAAGAATCCAAGACTGTTTCCGGAGTTAAGCAATGGAGGATCGTT 719
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 661 GGTGAATGGACAAACGAAGAATCCAAGACTGTTTCCGGAGTTGAGCAATGGAGGATCGTT 720
Query 720 TTGGAAACTTTTCACAGCTTCCCCTGTTATAGTAACAGCCTTCACGTTTCATTTCAATGT 779
||| |||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 721 CTGGCAACTCTTCACAGCTTCCCCTGTTATAGTTACAGCCTTCACGTTTCACTTCAATGT 780
Query 780 TCATCCAATTGGATTTGAGCTCAAAGATCCATTACAAGTGATCCCAGCAACTAAGATCTC 839
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TCATCCAATTGGATTCGAGCTCAAAGATCCATTACAAGTGATCCCAGCAACTAAGATCTC 840
Query 840 TGTCATCTTGTGCGCTGCGT-TATACTTTGCAACTGGACTCTTCGGGTACCTTCTCTTTG 898
|||||||||||| ||||| | | ||||| |||||||||||||| || |||||||||||||
Sbjct 841 TGTCATCTTGTGTGCTGC-TATCTACTTCGCAACTGGACTCTTTGGTTACCTTCTCTTTG 899
Query 899 GAGATGCAACTATGTCAGATATTCTAGTGAACTTTGACCAGAGCTCTGGTTCTTCCATTG 958
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GAGATGCAACTATGTCGGATATTCTAGTGAACTTTGACCAGAGCTCTGGTTCTTCCATTG 959
Query 959 GTTCTCTTCTCAACGACATTGTCAGACTCAGCTACGCGCTTCACCTCATGCTGGTCTTTC 1018
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 960 GTTCTCTTCTCAACGACATTGTCAGACTCAGCTACGTGCTTCACCTCATGCTGGTCTTTC 1019
Query 1019 CTCTCATGAACTTCTCATTGAGAGCAAATCTCGACGAACTCTTGTTCCCCAAGAAGCCGT 1078
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1020 CTCTCCTGAACTTCTCATTGAGAGCAAATCTCGACGAACTCTTGTACCCCAAGAAGCCGT 1079
Query 1079 CCTTGGAAAAAGACACAAAAAGATTCATCGGACTCACTCTGGCTCTACTGATTTGCTGTT 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 CCTTGGAAAAAGACACAAAAAGATTCATCGGACTCACTCTGGCTCTACTGATTTGCTGTT 1139
Query 1139 TCTTGTCTGCAATCGCTGTACCAGACATTTGGTACTTCTTTCAGTTCTTGGGATCAACCA 1198
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1140 TCTTGTCTGCAATCGCTGTACCAGACATTTGGTACTTCTTTCAGTTCATGGGATCAACCA 1199
Query 1199 CCACAGTCTCCATAGCATTCATATTTCCAGCCGCCATTGTTCTAAGGAATGTCCATGGTG 1258
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1200 TCACAGTCTCCATAGCATTCATATTTCCAGCCGCCATTGTTCTAAGGAATATCCATGGTG 1259
Query 1259 TATCAACCTCAAGAGAGAAGATCGTAGCTGCGATAATGCTTGTACTTGCTGTTGCCACTA 1318
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1260 TATCAACCTCAAGAGAGAAGATCGTAGCTGCAATAATGCTTGTTCTTGCTGTTGCCACTA 1319
Query 1319 GCATTATTGCTATCTCAACAAATTTATACAGCCTCGCAGCAAACTAATGGTTGAAAAAAG 1378
|||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1320 GCATTATTGCTATCTCGACAAATTTATACAGCCTCGCAGCAAACTAGTCGTTGAAAAAAG 1379
Query 1379 TTTTGCAAACAGTCCCCTCCATGATCACTTCAAACAAATCTGTAAAATTATTAGCTTTCC 1438
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1380 TTTTGCAAACAGTCCCTTCCATGATCACTTCAAAGAAATCTGTAAAATTATTAGCTTGCC 1439
Query 1439 GTAGCATTCATATTTATATCTTTGTGAAATAGGTGTGTCACAAATTGCAATGTAATAGCT 1498
|||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||
Sbjct 1440 GTAGCATTCATATTTATATCTTTGTGAAATAGGTTTGTCAGAAAATGCAATGTAATAGCT 1499
Query 1499 ATAGGGAGTGCAATATTTGTTGCTACTTGAAACAGAGAGAGCAAAAAATGAACAACTCTT 1558
||| |||||||| ||||||||| ||||||||||||| || | |||||||||||||||
Sbjct 1500 ATACAAAGTGCAATTTTTGTTGCTGCTTGAAACAGAGAAAG-AGGAAATGAACAACTCTT 1558
Query 1559 CAAAACTAGTATTCTTTCAATCACTTTTTGTAGACCATTATTT 1601
||||||| ||||||||| ||| |||||||||||||||||||||
Sbjct 1559 CAAAACTTGTATTCTTTAAATTACTTTTTGTAGACCATTATTT 1601
> AT2G40420.1 | Symbols: | Transmembrane amino acid transporter
family protein | chr2:16877223-16879214 FORWARD LENGTH=1632
Length=1632
Score = 811 bits (439), Expect = 0.0
Identities = 1062/1354 (78%), Gaps = 78/1354 (6%)
Strand=Plus/Plus
Query 38 TTTCTCCGGCGGTT-AGA-AAAATGTCACC-ACAGATCAAAACTCATCTCTTGCCTAAGC 94
||||||||| ||| | | |||||||| || | ||||||| | | ||||| || || |
Sbjct 56 TTTCTCCGGTAGTTGAAAGAAAATGTCTCCTGC-GATCAAAGCACCGCTCTTACCAAACC 114
Query 95 AAGAACC-T--TCGTCGTC-T--GAGAACCATGGATCATCAACCTCCGGCATC-GT-TTT 146
|||| || | || || || | |||||||||||||||| | |||| | | || |||
Sbjct 115 AAGAGCCTTCATCATCATCATCGGAGAACCATGGATCAT---TCGCCGG-AGCTGTGTTT 170
Query 147 CAACGTGTCTACGAGTATAATCGGAGCCGGAATAATGTCGATGCCGGCGGCGTTT-AAGG 205
||| | || || || || ||||||| ||||| ||| |||| |||||||| ||| || |
Sbjct 171 -AACATCTCGACAAGCATCGTCGGAGCTGGAATTATGGCGATTCCGGCGGC-TTTCAAAG 228
Query 206 TTCTTGGAATAGTCCCAGCGT-TTTTGATTATCACGATCATAGCTTGGCTTTCCACCAT- 263
| || || || ||||| | | | | ||| ||| |||||||||||||| |||| ||
Sbjct 229 TCCTAGGTGTAATCCCATC-TCTATCGATAATCGTAATCATAGCTTGGCTCTCCA--ATG 285
Query 264 T-TCTGTTGGATTTCTAATGAAATCAACACTCGCCGGAGAATCAACTACTTACGCCGGAG 322
| || | ||| ||| |||||||||| | ||||||||||||||||| ||||||||||| |
Sbjct 286 TATCAGCTGGGTTTTTAATGAAATCCAGTCTCGCCGGAGAATCAACAACTTACGCCGGCG 345
Query 323 TCATGAAAGAGTCGTTCGGAAAAACAGGAT-CCGTCGCTG-CACAGATTGCTACGATGGT 380
| ||||| || |||||||||||| | || | |||| |||| || | ||| ||| |||||
Sbjct 346 TGATGAAGGAATCGTTCGGAAAATCTGG-TGCCGTTGCTGTTAC-GGTTGTTACAATGGT 403
Query 381 TGCT-ACTTTTGGATGTATGATTGTCTTT-TCGATTATTATAGGCGATGTGCTTTCGGGT 438
|| | |||||||| | ||||||| | ||| |||||||| || || ||||| ||||||||
Sbjct 404 TG-TGACTTTTGGGTCTATGATTAT-TTTCTCGATTATCATTGGTGATGTTATTTCGGGT 461
Query 439 AATGA-AAATGGA-GGATCTCA-ACATCTTGGAGT-TTC-GCAAGAATGGTTTGGTTCTT 493
||||| ||| || ||| ||| |||| || | || ||| ||||||||||||||||||
Sbjct 462 AATGAGAAA--GATGGA-ATCATACAT-TTAG-GTCTTCTTCAAGAATGGTTTGGTTCTC 516
Query 494 ACTGGTGGAACACGAGAATCTTCGCTTTGTTGTTCAT-TTACTG-CTTTGTCTTGCTTCC 551
| |||||||| |||||| |||| | |||||||||||| || || ||| |||| |||||
Sbjct 517 ATTGGTGGAATACGAGATTCTTTGGTTTGTTGTTCATCTT--TGTCTTCCTCTTCCTTCC 574
Query 552 ATTGGTCTTGTGTAGACGTGTCGAAAGACTGGCATTTAGTTCAGCGGTTTCGTTTCTTCT 611
|| ||||| || |||||||| |||||| ||||||||||||| || |||||||||| ||
Sbjct 575 TTTAGTCTTATGCAGACGTGTAGAAAGATTGGCATTTAGTTCTGCAATTTCGTTTCTGCT 634
Query 612 TGCGGTT-CTATTTGTTGTCATAAGCTCGGTGCTGGCGATT-TCCGCGCTGGTG-AATGG 668
||| ||| || ||||||||||||||||||||| | |||||| | || || ||| || ||
Sbjct 635 TGC-GTTACTCTTTGTTGTCATAAGCTCGGTGTTAGCGATTAT-TGCTCTCGTGCAAGGG 692
Query 669 ACAAACGAAGAATCCAAGACTGTTTCC-GGAGTTAAGCAATGGAGG---ATCGTTTTGGA 724
| | || ||| ||| ||||| || || | | | || |||| || |||||||| |
Sbjct 693 A-AGACAAAGCCTCCGAGACTCTTCCCTGAACTCAA-TGATGGTGGATTATCGTTTTTCA 750
Query 725 AACTTTTCACAGCTTCCCCTGTTATAGTAACAGCCTTCACGTTTCATTTCAATGTTCATC 784
|| ||||| ||||||||||| || |||||||||||||| |||||||||||||| ||||
Sbjct 751 GTCTCTTCACTGCTTCCCCTGTCATTGTAACAGCCTTCACCTTTCATTTCAATGTCCATC 810
Query 785 CAATTGGATTTGAGCTCAAAGATCCATTACAA-GTGATCCCAGCAACTAA-GATCTCTGT 842
|| | | ||| || ||||||||||||||| || ||| | ||||||| || |||||||||
Sbjct 811 CAGTAGCATTCGAACTCAAAGATCCATTA-AATGTGCTTTCAGCAAC-AAGGATCTCTGT 868
Query 843 CA-TCTTGTGCGCTGCGTTATACTTTGCAACTGGACTCTTCGGGTACCTTCTCTTTGGAG 901
| || |||| ||| || | |||| || ||||| ||||| | |||||||| ||||| |
Sbjct 869 GATTC-TGTGTGCTACGATCTACTCAGCTACTGGTCTCTTTTGTTACCTTCTGTTTGGGG 927
Query 902 ATGCAACTATGTCAGATATTCTAGTGAACTTTGACCAGAGCTCTGGTTCTTCCATTGGTT 961
|| | |||||| ||||| ||||| |||||||||| || ||| | ||||||| ||||||
Sbjct 928 ATTCCACTATGACAGATGTTCTAATGAACTTTGATCAAAGCACCAGTTCTTCGGTTGGTT 987
Query 962 CTCTT-CTCAACGACATTGTCAGACTCAGCTACGCGCTTCACCTCATGCTGGTCTTTCCT 1020
| || || || || ||||| ||||||||||||||| ||||||||||||| || ||||||
Sbjct 988 C-ATTACTAAATGATATTGTTAGACTCAGCTACGCGATTCACCTCATGCTCGTGTTTCCT 1046
Query 1021 CT-CATGAACTTCTC-ATTGAGAGCAAATCTCGACGAACTCTTGTTCCCCAAGAAGCCGT 1078
|| | | |||||||| || ||||| || |||||||||||||||||||| | ||||| |
Sbjct 1047 CTGC-TCAACTTCTCGCTT-AGAGCCAACCTCGACGAACTCTTGTTCCCTATGAAGCTTT 1104
Query 1079 CCTTGGAAAAAGAC-ACAAAAAGATTCATCGGACTCACTCTGGC-TCTACTGATTTGC-T 1135
| || | ||||| || ||||||||| ||| ||||||| | | | ||||||| | | |
Sbjct 1105 CTTTAGTGGAAGACAAC-AAAAGATTCTTCGCACTCACTTTTCCAT-TACTGATAT-CTT 1161
Query 1136 GTTTCTTGTCTGCAATCGCTGTACCAGACATTTGGTACTTCTTTCAGTTCTTGGGATCAA 1195
|||||||| |||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1162 GTTTCTTGGGTGCAATTGCCATACCAGACATTTGGTACTTCTTTCAGTTCTTGGGATCAA 1221
Query 1196 CCACCACAGTCTCCATAGCATTCATATTTCCAGCCGCCATTGTTCTAAGGAATGTCCATG 1255
| | |||||||| ||||||||||| |||||||| || ||||| ||| ||||||| |||
Sbjct 1222 CTTCTACAGTCTCTATAGCATTCATCTTTCCAGCTGCAATTGTCCTACGGAATGTAAATG 1281
Query 1256 GTGTATCAACCTCAAGAGAGAAGATCGTAGCTGC-GATAATGCTTGTACTTGCTGTTGCC 1314
|| | || || | |||||||||||| |||||| | | |||||||||| ||||||||||||
Sbjct 1282 GTTTCTCGACTTTAAGAGAGAAGATTGTAGCTTCAG-TAATGCTTGTTCTTGCTGTTGCC 1340
Query 1315 ACTAGCATTATTGCTATCTCAACAAATTTATACA 1348
|| || || || ||||| || |||||| ||||||
Sbjct 1341 ACAAGTATCATCGCTATTTCGACAAATATATACA 1374
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79065858375
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5