BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg486063 Length=657 Score E Sequences producing significant alignments: (Bits) Value AT3G56220.1 | Symbols: | transcription regulators | chr3:20858... 804 0.0 AT2G40435.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 357 8e-98 > AT3G56220.1 | Symbols: | transcription regulators | chr3:20858918-20860531 FORWARD LENGTH=723 Length=723 Score = 804 bits (435), Expect = 0.0 Identities = 481/503 (96%), Gaps = 4/503 (1%) Strand=Plus/Plus Query 1 AGAAGAAGCTAAAACATATAAGAATGGTTTCGAGGGAACACAAGAGAGGTTCCTCTCTGC 60 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1 AGAAGAAGCTAAAACATATAAGAATGGTTTCGAGAGAACACAAGAGAGGTTCCTCTCTGC 60 Query 61 GTGAGAAGTTTCATTTGCTTCGTTCAATCACTAATTCTCATGCTGAGAGCGAAACATCTG 120 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 61 GTGAGAAGTTTCATTTGCTTCGTTCAATCACTGATTCTCATGCTGAGAGCGAAACATCTA 120 Query 121 TCATAATGGATGCATCAAAATATATCAAAAAGCTTAAGCAGAAAGTAGAAAAAATCAACA 180 ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 121 TCATAGTGGATGCATCAAAATATATCAAAAAGCTTAAGCAGAAGGTAGAAAAAATCAACA 180 Query 181 ATGAGACCACGTCTGAGCAATCTTTCCGCGAATCTTCCGATCCAAATCCTATGGTTACAG 240 ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 181 ATGCGACCACGTCTGAGCAATCTTTCCGTGAATCTTCCGATCCAAATCCTATGGTTACAG 240 Query 241 TGGAAACCCTAGAGAAGGGGTTCATGGTAAAAGTAATGTCA-GTGAAGAATGAGGCAGGC 299 |||||||||||||||||||||||||| |||| ||||||||| | |||||||||||||||| Sbjct 241 TGGAAACCCTAGAGAAGGGGTTCATGATAAAGGTAATGTCAAG-GAAGAATGAGGCAGGC 299 Query 300 ATGTTGGTTTGTGTTCTCGAAACCTTTGAAGATCTTGGACTTGATGTTGTTGAAGCTAGG 359 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 300 ATGTTGGTTTGTGTTCTTGAAACCTTTGAAGATCTTGGACTTGATGTTGTTGAAGCTAGG 359 Query 360 GTTTCATGTACAGACACATTTAGCTTACATGCCATCGGTTCATCAAATAATAATGATGGA 419 ||||||||||| |||||||||||||| |||||||| ||||||||||||||| |||||||| Sbjct 360 GTTTCATGTACTGACACATTTAGCTTGCATGCCATTGGTTCATCAAATAATGATGATGGA 419 Query 420 GACAT-CATGGATGCTGAAGCAGTGAAACAGGCAGTGACAGAAGCAATCAGGACCTGGAG 478 ||| | ||| ||||||||||||||||||||||||||| |||||||||| ||||||||||| Sbjct 420 GAC-TGCATAGATGCTGAAGCAGTGAAACAGGCAGTGGCAGAAGCAATAAGGACCTGGAG 478 Query 479 TGATAGCCATGCATGATCCAAAA 501 ||||||||||||||||| ||||| Sbjct 479 TGATAGCCATGCATGATTCAAAA 501 > AT2G40435.1 | Symbols: | BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G56220.1); Has 289 Blast hits to 289 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 289; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:16886824-16888638 FORWARD LENGTH=932 Length=932 Score = 357 bits (193), Expect = 8e-98 Identities = 387/476 (81%), Gaps = 31/476 (7%) Strand=Plus/Plus Query 20 AAGAATGGTTTCGAGGGAACACAAGAGAGGTTCCTCTCTGCGTGAGAAGTTTCATTTGCT 79 |||||||||||| |||||||| |||||||||| || | ||| ||||||||||| ||||| Sbjct 221 AAGAATGGTTTCAAGGGAACAGAAGAGAGGTT-CT-T-TGCAAGAGAAGTTTCAATTGCT 277 Query 80 TCGTTCAATCACTAATTCTCATGCTGAGAGCGAAACATCTG-TCATAATGGATGCATCAA 138 |||||||||||||||||| |||||||| | ||| ||||| | |||||||||||||||||| Sbjct 278 TCGTTCAATCACTAATTCACATGCTGAAAACGATACATC-GATCATAATGGATGCATCAA 336 Query 139 AATATATCAAAAAGCTTAAGCAGAAAGTAGAAAAAATCAACAATGAGACC--AC-GTCTG 195 |||||||| ||||||||||||||||||| |||| | ||||| | ||||| || | | | Sbjct 337 AATATATCCAAAAGCTTAAGCAGAAAGTCGAAAGATTCAACCA--AGACCCTACTG-CAG 393 Query 196 AGCAATCTTTCC-GCGAATCTTCCGATCCAAAT-C-CTA-TGGTTACAGTGGAAACCCTA 251 ||||||||| | |||| | | |||||||| | | | |||| ||||||||||||||| Sbjct 394 AGCAATCTT-CAAGCGAGCCCACGGATCCAAAAACACCAATGGTAACAGTGGAAACCCTA 452 Query 252 GAGAAGGGGTTCATGGTAAAAGTAATGTCAGTGAA-GAATGAGGCAGGCATG-TTGGTTT 309 || ||||| || ||| |||| || | |||| ||| |||| || |||| ||| ||| ||| Sbjct 453 GACAAGGGTTTTATGATAAACGTGTTCTCAG-GAAAGAATCAGCCAGGGATGCTTG-TTT 510 Query 310 -GTGT-TCTCGAAACCTTTGAAGATCTTGGACTTGATGTTGTTGAAGCTAGGGTTTCATG 367 | || | | ||| |||| || ||| |||| ||| | ||| |||||||||||| |||||| Sbjct 511 CG-GTAT-TAGAAGCCTTCGAGGATATTGGGCTTAACGTTCTTGAAGCTAGGGCTTCATG 568 Query 368 TACAGACACATTTAGCTTACATGCCATCGGTTCATCAAATAAT-AATGATGGAGACA-TC 425 ||| ||| | |||||||| |||||||| || | || | ||| || |||||||| | | Sbjct 569 TACCGACTCTTTTAGCTTGCATGCCATGGGA-C-TCGAG-AATGAA-GATGGAGAAAAT- 623 Query 426 ATGGATGCTGAAGCAGTGAAACAGGCAGTGACAGAAGCAATCAGGACCTGGAGTGA 481 |||||||||||||||||||||||||||||||| || |||||||||| |||| |||| Sbjct 624 ATGGATGCTGAAGCAGTGAAACAGGCAGTGACTGATGCAATCAGGAGCTGGGGTGA 679 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31747980904 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5