BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486063
Length=657
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56220.1 | Symbols: | transcription regulators | chr3:20858... 804 0.0
AT2G40435.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 357 8e-98
> AT3G56220.1 | Symbols: | transcription regulators | chr3:20858918-20860531
FORWARD LENGTH=723
Length=723
Score = 804 bits (435), Expect = 0.0
Identities = 481/503 (96%), Gaps = 4/503 (1%)
Strand=Plus/Plus
Query 1 AGAAGAAGCTAAAACATATAAGAATGGTTTCGAGGGAACACAAGAGAGGTTCCTCTCTGC 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 AGAAGAAGCTAAAACATATAAGAATGGTTTCGAGAGAACACAAGAGAGGTTCCTCTCTGC 60
Query 61 GTGAGAAGTTTCATTTGCTTCGTTCAATCACTAATTCTCATGCTGAGAGCGAAACATCTG 120
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 61 GTGAGAAGTTTCATTTGCTTCGTTCAATCACTGATTCTCATGCTGAGAGCGAAACATCTA 120
Query 121 TCATAATGGATGCATCAAAATATATCAAAAAGCTTAAGCAGAAAGTAGAAAAAATCAACA 180
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 121 TCATAGTGGATGCATCAAAATATATCAAAAAGCTTAAGCAGAAGGTAGAAAAAATCAACA 180
Query 181 ATGAGACCACGTCTGAGCAATCTTTCCGCGAATCTTCCGATCCAAATCCTATGGTTACAG 240
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 181 ATGCGACCACGTCTGAGCAATCTTTCCGTGAATCTTCCGATCCAAATCCTATGGTTACAG 240
Query 241 TGGAAACCCTAGAGAAGGGGTTCATGGTAAAAGTAATGTCA-GTGAAGAATGAGGCAGGC 299
|||||||||||||||||||||||||| |||| ||||||||| | ||||||||||||||||
Sbjct 241 TGGAAACCCTAGAGAAGGGGTTCATGATAAAGGTAATGTCAAG-GAAGAATGAGGCAGGC 299
Query 300 ATGTTGGTTTGTGTTCTCGAAACCTTTGAAGATCTTGGACTTGATGTTGTTGAAGCTAGG 359
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ATGTTGGTTTGTGTTCTTGAAACCTTTGAAGATCTTGGACTTGATGTTGTTGAAGCTAGG 359
Query 360 GTTTCATGTACAGACACATTTAGCTTACATGCCATCGGTTCATCAAATAATAATGATGGA 419
||||||||||| |||||||||||||| |||||||| ||||||||||||||| ||||||||
Sbjct 360 GTTTCATGTACTGACACATTTAGCTTGCATGCCATTGGTTCATCAAATAATGATGATGGA 419
Query 420 GACAT-CATGGATGCTGAAGCAGTGAAACAGGCAGTGACAGAAGCAATCAGGACCTGGAG 478
||| | ||| ||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 420 GAC-TGCATAGATGCTGAAGCAGTGAAACAGGCAGTGGCAGAAGCAATAAGGACCTGGAG 478
Query 479 TGATAGCCATGCATGATCCAAAA 501
||||||||||||||||| |||||
Sbjct 479 TGATAGCCATGCATGATTCAAAA 501
> AT2G40435.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: transcription regulators (TAIR:AT3G56220.1); Has 289
Blast hits to 289 proteins in 30 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 289; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). | chr2:16886824-16888638
FORWARD LENGTH=932
Length=932
Score = 357 bits (193), Expect = 8e-98
Identities = 387/476 (81%), Gaps = 31/476 (7%)
Strand=Plus/Plus
Query 20 AAGAATGGTTTCGAGGGAACACAAGAGAGGTTCCTCTCTGCGTGAGAAGTTTCATTTGCT 79
|||||||||||| |||||||| |||||||||| || | ||| ||||||||||| |||||
Sbjct 221 AAGAATGGTTTCAAGGGAACAGAAGAGAGGTT-CT-T-TGCAAGAGAAGTTTCAATTGCT 277
Query 80 TCGTTCAATCACTAATTCTCATGCTGAGAGCGAAACATCTG-TCATAATGGATGCATCAA 138
|||||||||||||||||| |||||||| | ||| ||||| | ||||||||||||||||||
Sbjct 278 TCGTTCAATCACTAATTCACATGCTGAAAACGATACATC-GATCATAATGGATGCATCAA 336
Query 139 AATATATCAAAAAGCTTAAGCAGAAAGTAGAAAAAATCAACAATGAGACC--AC-GTCTG 195
|||||||| ||||||||||||||||||| |||| | ||||| | ||||| || | | |
Sbjct 337 AATATATCCAAAAGCTTAAGCAGAAAGTCGAAAGATTCAACCA--AGACCCTACTG-CAG 393
Query 196 AGCAATCTTTCC-GCGAATCTTCCGATCCAAAT-C-CTA-TGGTTACAGTGGAAACCCTA 251
||||||||| | |||| | | |||||||| | | | |||| |||||||||||||||
Sbjct 394 AGCAATCTT-CAAGCGAGCCCACGGATCCAAAAACACCAATGGTAACAGTGGAAACCCTA 452
Query 252 GAGAAGGGGTTCATGGTAAAAGTAATGTCAGTGAA-GAATGAGGCAGGCATG-TTGGTTT 309
|| ||||| || ||| |||| || | |||| ||| |||| || |||| ||| ||| |||
Sbjct 453 GACAAGGGTTTTATGATAAACGTGTTCTCAG-GAAAGAATCAGCCAGGGATGCTTG-TTT 510
Query 310 -GTGT-TCTCGAAACCTTTGAAGATCTTGGACTTGATGTTGTTGAAGCTAGGGTTTCATG 367
| || | | ||| |||| || ||| |||| ||| | ||| |||||||||||| ||||||
Sbjct 511 CG-GTAT-TAGAAGCCTTCGAGGATATTGGGCTTAACGTTCTTGAAGCTAGGGCTTCATG 568
Query 368 TACAGACACATTTAGCTTACATGCCATCGGTTCATCAAATAAT-AATGATGGAGACA-TC 425
||| ||| | |||||||| |||||||| || | || | ||| || |||||||| | |
Sbjct 569 TACCGACTCTTTTAGCTTGCATGCCATGGGA-C-TCGAG-AATGAA-GATGGAGAAAAT- 623
Query 426 ATGGATGCTGAAGCAGTGAAACAGGCAGTGACAGAAGCAATCAGGACCTGGAGTGA 481
|||||||||||||||||||||||||||||||| || |||||||||| |||| ||||
Sbjct 624 ATGGATGCTGAAGCAGTGAAACAGGCAGTGACTGATGCAATCAGGAGCTGGGGTGA 679
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31747980904
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5