BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486064
Length=687
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56240.1 | Symbols: CCH | copper chaperone | chr3:20863257-2... 987 0.0
> AT3G56240.1 | Symbols: CCH | copper chaperone | chr3:20863257-20864544
REVERSE LENGTH=711
Length=711
Score = 987 bits (534), Expect = 0.0
Identities = 651/703 (93%), Gaps = 25/703 (4%)
Strand=Plus/Plus
Query 1 CGAATCTTTGCTTTTCCGTTACTATAAATACTTAAGAAGACACCATTTCTTCTCATTCAA 60
||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1 CGAATCTTTGCTTTTGCGTTACTATAAATA-TTCAGAAGACACCATTTCTTCTCATTCAA 59
Query 61 CAAAC-AGACATCTCATTCCCTTATTCAG---ATC-A--TC---GGTCTCAAAGCTTAGT 110
||||| || |||||||||| || |||| | ||| | || || ||||||||||| |
Sbjct 60 CAAACAAG-CATCTCATTCTCTGATTCGGTCCATCGATCTCAAAGG-CTCAAAGCTTAAT 117
Query 111 CGTTTCCTTTCTTCTTATATATTATAGCCATGGCTCAGACCGTTGTCCTCAAAGTTGGTA 170
|||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||
Sbjct 118 CGTTTCCTTTCTTC---T-TATTCTAGCCATGGCTCAGACCGTTGTCCTCAAAGTTGGTA 173
Query 171 TGTCATGCCAAGGCTGCGTTGGTGCCGTCAATAGAGTCCTAGGCAAAATGGAAGGGGTTG 230
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 174 TGTCATGCCAAGGCTGCGTTGGTGCCGTCAATAGAGTTTTAGGCAAAATGGAAGGGGTTG 233
Query 231 AGTCATTTGACATTGATATCAAGGAGCAAAAGGTGACAGTGAAAGGTAATGTTGAGCCTG 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 AGTCATTTGACATTGATATCAAGGAGCAAAAGGTGACAGTGAAAGGTAATGTTGAGCCTG 293
Query 291 AAGCAGTTTTCCAAACAGTTTCAAAGACTGGAAAGAAGACTTCTTACTGGCCAGTGGATG 350
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 294 AAGCAGTTTTCCAAACAGTTTCAAAGACCGGAAAGAAGACTTCTTACTGGCCAGTGGAGG 353
Query 351 CTGA-GACTGAGCCAAAAGCCGAGGCTGAGCCTAAGGCCGAGGCCGTGACTGAGACTAAA 409
|||| | |||||||||||||||||||||| ||||||| ||| |||||||||||||||||
Sbjct 354 CTGAAG-CTGAGCCAAAAGCCGAGGCTGATCCTAAGGTCGAAACCGTGACTGAGACTAAA 412
Query 410 ACCGAGGCTGAGACTAAGACTGAGGCTAAGGTTGATGCAAAAGCGGATGTTGAACCAAAA 469
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 413 ACCGAGGCTGAGACTAAGACTGAGGCTAAGGTTGATGCAAAAGCTGATGTTGAACCAAAA 472
Query 470 GCCGCAGAAGCCGAGACTAAGCCATCACAAGTTTAAGTATACTAAAGATGAGAAGGAAGG 529
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 473 GCCGCAGAAGCCGAGACTAAGCCATCACAAGTTTAAGTATACTAACGATGAAAAGGAAGG 532
Query 530 CTAATCTACCTTTACAATGCTTCTTTATCTTTTGCTTGTGTGTGTTGTTGTAAGCAATGC 589
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 533 CTAATCTACCTTTACAATGCTTCTTTATCTTTTGCTTTTGTGTGTTGTTGTAAGAAATGC 592
Query 590 TTTCTCTAAACATCTAATAT-TTTC---ATGTATACCTTTTTCAACCT-TTGATAAGAAG 644
|| ||||||| | ||||||| ||| |||||||||||||||||| | ||||||| |||
Sbjct 593 TTCCTCTAAATACCTAATATCTTTATGTATGTATACCTTTTTCAAC-TATTGATAACAAG 651
Query 645 ATGTTGGACCCATGTTGGTCCGACTTTCTTTTATAATAAATTT 687
|||||||||||||||||||||||||||||||||||| || |||
Sbjct 652 ATGTTGGACCCATGTTGGTCCGACTTTCTTTTATAAGAAGTTT 694
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33255005314
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5