BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486066
Length=990
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56260.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 726 0.0
> AT3G56260.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 8
plant structures; EXPRESSED DURING: F mature embryo stage,
petal differentiation and expansion stage, E expanded cotyledon
stage, D bilateral stage; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G40475.1). | chr3:20867970-20869024
REVERSE LENGTH=1055
Length=1055
Score = 726 bits (393), Expect = 0.0
Identities = 526/587 (90%), Gaps = 21/587 (4%)
Strand=Plus/Plus
Query 408 GATCTCAGGAGGAGCAGTCACGGTAGCAAGAAGACGACCAGCTCATCGTTTTCTTGGTCT 467
|||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||
Sbjct 485 GATCTCAGGAGGAGCAATCACGGTAGCAAGAAGACGGCAAGCTCATCGTTTTCTTGGTCT 544
Query 468 TCTACGTCATCTTCATCTTCCTTTTCCTCCTCGCCACCACATTCTTTGAAAAAACG-AGC 526
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 545 TCTACGTCATCTTCATCTTCCTTTTCCTCCTCGCCACCACATTCTTTGAAAAAACGTAT- 603
Query 527 GAGTCATGACAAAAAATCACCACTTCTGTACGCGAACTACGGAGAGGATGAGCTTAGGTC 586
|||||| ||||||||||| |||||||||||||| ||||||| ||||||||||||||||||
Sbjct 604 GAGTCACGACAAAAAATCGCCACTTCTGTACGCTAACTACGAAGAGGATGAGCTTAGGTC 663
Query 587 GTCACCAACCTCGACTCTGCGTTACTCCAAgggggggCGAATTGGGTGTAGTTCTTCAAT 646
|||||||||||||||||| ||| |||||| ||||| || |||| ||||||||||||||
Sbjct 664 TTCACCAACCTCGACTCTGTGTTGCTCCAACGGGGGAAGACTTGGCTGTAGTTCTTCAAT 723
Query 647 GGGGAGTCTGACAAGATCTCTGTTCCCTGGATCAATGGAAAATATGAAGAGAAACGGGAC 706
||||||| |||||||| |||||||| |||| |||||||| |||||||||| | | |||
Sbjct 724 GGGGAGTGTGACAAGAGCTCTGTTCTCTGGGTCAATGGAGGGTATGAAGAGACATGAGAC 783
Query 707 CACTGGTAAAGCTCTAATCATCAGCGACATGAATAAAGCTTGATTATGTGAATCTATTGA 766
||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 784 CACAGGTAAAGCTCTAATCATCAGCGACATGAATAAAGCTTGATTATGTGAATA-A---A 839
Query 767 GTGCTTGATTCTTTCTATGAGCTGCTTCACCTCATTGAACAGAG--TGTTATAGTGCTTG 824
| |||| || ||||||||||||||||| ||||||||||||||| ||||||||| |||
Sbjct 840 G--CTTGGTTTTTTCTATGAGCTGCTTCGCCTCATTGAACAGAGAGTGTTATAGTTATTG 897
Query 825 ATGTGTGAATGTAACTATATAGTTTGTCTCTCTCAGTCGTGGCCTTAACCGTGTGT-TGT 883
||||||||||||| ||||||||||||||||| ||||||||||||| || ||||| | |
Sbjct 898 GTGTGTGAATGTAAGTATATAGTTTGTCTCTC--AGTCGTGGCCTTA-CC-TGTGTAT-T 952
Query 884 GGACACTGGACAGGCTTTCTCGTCAACTCATGTCTATCTAGAACCAAGAACGTTCTCCCA 943
| |||||||||||| ||||||| ||||||||| ||||||||||||||||||||||
Sbjct 953 G-----TGGACAGGCTTTTTCGTCAATTCATGTCTAAGTAGAACCAAGAACGTTCTCCCA 1007
Query 944 CTGAAACGATGTTAAATATTATAAACCGATAGATCTTTTGTATACAC 990
|||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1008 CTGAAACGATGTTAAATATTATAAACCGATAGATATTTTGTATACAC 1054
Score = 514 bits (278), Expect = 6e-145
Identities = 365/405 (90%), Gaps = 14/405 (3%)
Strand=Plus/Plus
Query 1 CAGAATAAATATCCACGATCATATATACAACCGTGCAAAGAAGATTCTTTTGTTTCAT-- 58
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 32 CAGAATAAATATCCACGAT--TATATACAACCGTGCAAAGAAGATTCTTTTGTTTCATCG 89
Query 59 ---AGCTTGTTTTACTCACAAAACATATTACTCTTTCTCACCTCTAAAGAAGCTTCGAAA 115
| |||||||||||| ||| |||||||||||||| |||||||||||||||||||||||
Sbjct 90 GCAAACTTGTTTTACTCGCAATACATATTACTCTTTGTCACCTCTAAAGAAGCTTCGAAA 149
Query 116 CTAGCACTTCCTGTTTCCATTTTTCGTACTTCAATTCTGATAAAAAGCTGACTCAAACAT 175
||||||||| ||||| || ||||||||| |||||||| || |||||| |||||||||||
Sbjct 150 CTAGCACTTGTTGTTT-CAATTTTCGTACATCAATTCTCATCAAAAGCCGACTCAAACAT 208
Query 176 AGACACG-GAGTTTGA-AAATAATAAATGTCAGAAAGAATAGAAGATGACTTTGCAATCG 233
| || || |||||| | ||| || | |||||||||||| |||||||||||||||||||||
Sbjct 209 AAAC-CGAGAGTTT-ATAAAAAACAGATGTCAGAAAGACTAGAAGATGACTTTGCAATCG 266
Query 234 ATGAAGAGATATCCTCCTACTATGGCGGAGCCTCCATACCATTCATATGGGAGTCAAGGC 293
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 267 ATGAAGAGAGATCCTCCTACTATGGCGGAGCCTCCATACCATTCATATGGGAGTCAAGGC 326
Query 294 CTGGAACACCCAAAAACCACCTCTGCTCCGATTCCTCTCTTCCTCCGCCGCTCACCCCGC 353
| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||
Sbjct 327 CAGGAACACCCAAAAACCACCTCTGCTCCGATTCCTCTCTTCCTCTGCCTCTCACACCGC 386
Query 354 CTCCGTCGTACTACTCTTCCGAGATTTTGTCGACACCGAAGAGAC 398
| || || |||||||| |||| ||||||||||||||| ||| |||
Sbjct 387 CGCCCTCATACTACTCCTCCGGGATTTTGTCGACACC-AAG-GAC 429
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48475951855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5