BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486067
Length=1668
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56270.1 | Symbols: | Plant protein of unknown function (DU... 2045 0.0
> AT3G56270.1 | Symbols: | Plant protein of unknown function (DUF827)
| chr3:20870000-20872049 FORWARD LENGTH=1756
Length=1756
Score = 2045 bits (1107), Expect = 0.0
Identities = 1521/1711 (89%), Gaps = 67/1711 (4%)
Strand=Plus/Plus
Query 1 GTGACTTTCATTACCGAG-AAAACATAATTATAGAGAAGCTCTCAATCTTGTTTGCTTCT 59
|||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||
Sbjct 70 GTGACTTTCATTACCGAGAAAAACACAATCATAGAGAAGCTCTCAATCTTGTTTGCTTCT 129
Query 60 GGGCAGTATCTATGATTACTGT-AATGGATCCCTCTTTAATTATCTTTCCCTTTCAAGTG 118
| ||||| ||||||||||||| ||| |||| |||||| ||||||||||||||||| ||
Sbjct 130 GATCAGTAACTATGATTACTGTAAATAGATCACTCTTTCATTATCTTTCCCTTTCACTTG 189
Query 119 TACACACCAGTTGGTTCTCCAGAGC--GCAGAGATGGCGGAAATGCATCTA-AACCCTGC 175
|||| |||| || ||||| | |||| | || |||||||| | ||| | | | ||||||
Sbjct 190 TACAAACCAATTCGTTCT-C-GAGCTAACGGAAATGGCGGAGAGGCAAC-AGAGCCCTGC 246
Query 176 GGCGGAGACGATTCCCGGTACACCCGTAATCCGGGAGGTGAGAACCGGATCCGGGTCCCA 235
|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
Sbjct 247 GGCGGAGACGATTCCCGGTACACCCGTAATCCGGGAAGTGAGAACCGGAACCGGGTCCGA 306
Query 236 GAATTTCAACCCGGAGAGTACAAGGAGAGGAGGAC-TGAGAGCTGAAATGGACATTTCTT 294
||||||||||||||||| ||||||||||||| | | ||||||||||||| |||||||||
Sbjct 307 GAATTTCAACCCGGAGAATACAAGGAGAGGATG-CTTGAGAGCTGAAATCGACATTTCTC 365
Query 295 CACCGTTATTTGGTGGTCGTGGG-TCTCGGGTTCCGTTCGATCTTGGAA-ACAACTACGA 352
||| ||||| ||||||||||||| ||| ||||||| ||| ||||| ||| |||| |||||
Sbjct 366 CACAGTTATATGGTGGTCGTGGGTTCT-GGGTTCCCTTCAATCTT-GAAGACAATTACGA 423
Query 353 CGGTGTGGGAGATTTTGACATAAAGAGGATGAAAGAACAGACAGTGGAGCTTGAGAAGGA 412
| |||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 424 CTGTGTGGGAGAATTTGACATAAAGAGAATGGAAGAACAGACAGTGGAGCTTGAGAAGGA 483
Query 413 TCTGATTATGAAAGAGTTAGAAACACTAGATCTTCTTGAAGCTCTTGGATCAACCAAAAG 472
||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 484 TCTGATTATGAAAGAGTTAGAGACTCTGGATCTTCTTGAAGCTCTTGGATCAACCAAAAG 543
Query 473 CATTGTTGAAGATTTGAAGTGGCAGCTCCAGCAACAAGCACTTAGATGCATGGAGACCCC 532
||| |||||||||||||||||||||| ||||| |||||||| ||||||| |||||||||
Sbjct 544 GATTTTTGAAGATTTGAAGTGGCAGCTTCAGCAGCAAGCACTGAGATGCAAGGAGACCCC 603
Query 533 TCAACATTTGCGTTCACACAT-CAAAGAGATGATCGATGA--AC-G-C-TCG------CC 580
||||||||||||||||||| | |||||||||| ||||||| || | | ||| ||
Sbjct 604 TCAACATTTGCGTTCACAC-TCCAAAGAGATGGTCGATGAGCACTGCCATCGTAATCCCC 662
Query 581 AG-A-TCT---GA-C-CCT---CTTGGAATTGAAGCAAGCAAGTATGAATATTGGTAAAA 630
| | ||| || | | | ||||| |||||||||| |||||||| || ||||||
Sbjct 663 TGAAGTCTCCGGATCTGATGACCATGGAAATGAAGCAAGCTGGTATGAATCTTTGTAAAA 722
Query 631 CCATGGATGATCTTGCGTTGATCCACTCTTATGCTGAATCTCTGAATATAAAAACGAAGG 690
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 723 CCATGGATGATCTTGCGTTGATCCACTCTTATGCTGAATCTCTGAATATGAAAACGAAGG 782
Query 691 AAGAGAAAGATGTCTTTGGAGTAGCGTCTCTAGCTGAGGAGCTTAACAGTTTGAGGTTTA 750
|||||||||||||| ||||||||||||||||||| ||||| ||||||||||||| |||||
Sbjct 783 AAGAGAAAGATGTCCTTGGAGTAGCGTCTCTAGCGGAGGAACTTAACAGTTTGAAGTTTA 842
Query 751 ACCCAGCAGGTCCTGATGAAGGAGAGAGGTTCAATACCGAGGATTTACTC-GTGAACCCA 809
| ||||||||||||||| ||| |||||| |||||||||||| |||||| | ||||| |||
Sbjct 843 AACCAGCAGGTCCTGATCAAGTAGAGAGATTCAATACCGAGAATTTAC-CAGTGAATCCA 901
Query 810 CAATGTGAACAGATTAAGATGGTAGTTGAAACCAATGATACAGCTTTTCATAAACAGAGC 869
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 902 CAATGTGAACAGATTAAGATGGTAGTTGAAACCTATGATACAGCTTTCCATAAACAGAGC 961
Query 870 AAGACCTGCCTGAGAACTGCAGAAATGAGATTGGTTGCTGCAAGAAAAATGGAAGAGGCT 929
|| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 962 AAAACCTGCCCGAGAACTGCAGATATGAGATTGGTTGCTGCAAGAAAAATGGAAGAGGCA 1021
Query 930 GCACGAGCAGCGGAAGCACTTGCGCTTTCTGAAATGACCATATTATCCAGC-GTAAAAAA 988
||| ||||||||||||||||||||||| ||||||||||||||||||||||| | || |||
Sbjct 1022 GCAAGAGCAGCGGAAGCACTTGCGCTTGCTGAAATGACCATATTATCCAGCAG-AAGAAA 1080
Query 989 CGAAGACACAT-TCTGCTTCCCGGAGCCACCATGTTTTCCATTAACACTTAAAGCACAGA 1047
| ||||| | | |||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1081 CCAAGACGC-TCTCTGCTTCCCTAAGACACCATGTTTTCCATTAACACTTAAAGCACAGA 1139
Query 1048 TGAACAAAGAATTATCCGCCAATGTCTCAAGAATAGAGATCTTGAGGAAGCTGGAGGAAG 1107
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TGAACAAAGAATTATCCACCAATGTCTCAAGAATAGAGATCTTGAGGAAGCTGGAGGAAG 1199
Query 1108 CTAATGAAGAAGTTAAACAAAGTCAAA-AAGCTTTGG-AGACGGCGTTAAACCGGGTAGA 1165
|||| |||||||||||||||||| ||| |||| |||| || |||||||||||||||||
Sbjct 1200 CTAACGAAGAAGTTAAACAAAGT-AAACAAGCCTTGGAAG-TTGCGTTAAACCGGGTAGA 1257
Query 1166 AGTCGCCAATACGAAGCAACTTGAAGCACAAGATGCGTTTCGGCAGTGGAACATAGAGTC 1225
| |||| | | |||||||||||||||| |||| || |||||||||||||||||||||||
Sbjct 1258 AATCGCTAGTGTGAAGCAACTTGAAGCAGAAGAGGCATTTCGGCAGTGGAACATAGAGTC 1317
Query 1226 ATGGAAAGACCAGAAAGCTGTTGGAGCAAAACGCTCAATGAAAAGAGACAGCTTTCCTCA 1285
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1318 ATGGAAAGACCAGAAAGCTGTTGGAGCAAAACGCTCGATGAAAAGAGAAAGCTTTCCTCA 1377
Query 1286 ACGCTCCTTCTTGAGCCATGTGAAGCAGCACGAGCCACTGATCGATCTCCCTGAGCCAAT 1345
||||| |||||||||||| | || |||||||||||||||||||||||||||||||||||
Sbjct 1378 GCGCTCTTTCTTGAGCCATATCAATCAGCACGAGCCACTGATCGATCTCCCTGAGCCAAT 1437
Query 1346 GCTGAAACGTAACGTCTCAATGGGTAATAATGTTCTTAACCGAAAAGATGAGAAACAGTT 1405
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1438 GCTGAAACGTAACGTCTCAATGGGTAAT---GCTCTTAACCGAAAAGATGAGAAACAGTT 1494
Query 1406 GGTCACGCCGAGAATAAAGTTTAGGTTCATACAAAAACATCAAGCTTCCATTGGAGAAAC 1465
|||||||||||| | |||||||||||||||||||| |||||||||||||||| || ||||
Sbjct 1495 GGTCACGCCGAGGAGAAAGTTTAGGTTCATACAAACACATCAAGCTTCCATTAGAAAAAC 1554
Query 1466 AGAGTAAGTTAAAAAA---CCCAGCTTTTAAAAACATGTTTTGCACATTTCAATTCCTGt 1522
|||||||| ||||||| |||| | ||| ||||||||||||||||||||| ||||||||
Sbjct 1555 AGAGTAAGCTAAAAAAATACCCAACCTTTGAAAACATGTTTTGCACATTTCGATTCCTGT 1614
Query 1523 tttttttttttttttttATTGTTTGATCATTGATAGGTGTTGTTGCTTCTATCTTAAA-C 1581
|||||||| || || |||||||||||||| |||||||||||||| ||| ||| |
Sbjct 1615 TTTTTTTTATTCTTG-----GTTTGATCATTGATGGGTGTTGTTGCTTCCATCA-AAAGC 1668
Query 1582 AAACCCCAGATGATTAGAGTGA-ACGTGttttttttttGACTCAAATGTGACGAAAAGAA 1640
||| | |||||||||||||||| | ||||| |||| |||||||||||||| |||||||
Sbjct 1669 AAAACACAGATGATTAGAGTGAGATGTGTTGTTTT---GACTCAAATGTGACAAAAAGAA 1725
Query 1641 AAACATTATA--AAAAT-TAAAGCTTCTAGT 1668
|||||||||| |||| |||||||||||||
Sbjct 1726 AAACATTATAGTAAAAACTAAAGCTTCTAGT 1756
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82429294890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5