BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg486067 Length=1668 Score E Sequences producing significant alignments: (Bits) Value AT3G56270.1 | Symbols: | Plant protein of unknown function (DU... 2045 0.0 > AT3G56270.1 | Symbols: | Plant protein of unknown function (DUF827) | chr3:20870000-20872049 FORWARD LENGTH=1756 Length=1756 Score = 2045 bits (1107), Expect = 0.0 Identities = 1521/1711 (89%), Gaps = 67/1711 (4%) Strand=Plus/Plus Query 1 GTGACTTTCATTACCGAG-AAAACATAATTATAGAGAAGCTCTCAATCTTGTTTGCTTCT 59 |||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||| Sbjct 70 GTGACTTTCATTACCGAGAAAAACACAATCATAGAGAAGCTCTCAATCTTGTTTGCTTCT 129 Query 60 GGGCAGTATCTATGATTACTGT-AATGGATCCCTCTTTAATTATCTTTCCCTTTCAAGTG 118 | ||||| ||||||||||||| ||| |||| |||||| ||||||||||||||||| || Sbjct 130 GATCAGTAACTATGATTACTGTAAATAGATCACTCTTTCATTATCTTTCCCTTTCACTTG 189 Query 119 TACACACCAGTTGGTTCTCCAGAGC--GCAGAGATGGCGGAAATGCATCTA-AACCCTGC 175 |||| |||| || ||||| | |||| | || |||||||| | ||| | | | |||||| Sbjct 190 TACAAACCAATTCGTTCT-C-GAGCTAACGGAAATGGCGGAGAGGCAAC-AGAGCCCTGC 246 Query 176 GGCGGAGACGATTCCCGGTACACCCGTAATCCGGGAGGTGAGAACCGGATCCGGGTCCCA 235 |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| | Sbjct 247 GGCGGAGACGATTCCCGGTACACCCGTAATCCGGGAAGTGAGAACCGGAACCGGGTCCGA 306 Query 236 GAATTTCAACCCGGAGAGTACAAGGAGAGGAGGAC-TGAGAGCTGAAATGGACATTTCTT 294 ||||||||||||||||| ||||||||||||| | | ||||||||||||| ||||||||| Sbjct 307 GAATTTCAACCCGGAGAATACAAGGAGAGGATG-CTTGAGAGCTGAAATCGACATTTCTC 365 Query 295 CACCGTTATTTGGTGGTCGTGGG-TCTCGGGTTCCGTTCGATCTTGGAA-ACAACTACGA 352 ||| ||||| ||||||||||||| ||| ||||||| ||| ||||| ||| |||| ||||| Sbjct 366 CACAGTTATATGGTGGTCGTGGGTTCT-GGGTTCCCTTCAATCTT-GAAGACAATTACGA 423 Query 353 CGGTGTGGGAGATTTTGACATAAAGAGGATGAAAGAACAGACAGTGGAGCTTGAGAAGGA 412 | |||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||| Sbjct 424 CTGTGTGGGAGAATTTGACATAAAGAGAATGGAAGAACAGACAGTGGAGCTTGAGAAGGA 483 Query 413 TCTGATTATGAAAGAGTTAGAAACACTAGATCTTCTTGAAGCTCTTGGATCAACCAAAAG 472 ||||||||||||||||||||| || || |||||||||||||||||||||||||||||||| Sbjct 484 TCTGATTATGAAAGAGTTAGAGACTCTGGATCTTCTTGAAGCTCTTGGATCAACCAAAAG 543 Query 473 CATTGTTGAAGATTTGAAGTGGCAGCTCCAGCAACAAGCACTTAGATGCATGGAGACCCC 532 ||| |||||||||||||||||||||| ||||| |||||||| ||||||| ||||||||| Sbjct 544 GATTTTTGAAGATTTGAAGTGGCAGCTTCAGCAGCAAGCACTGAGATGCAAGGAGACCCC 603 Query 533 TCAACATTTGCGTTCACACAT-CAAAGAGATGATCGATGA--AC-G-C-TCG------CC 580 ||||||||||||||||||| | |||||||||| ||||||| || | | ||| || Sbjct 604 TCAACATTTGCGTTCACAC-TCCAAAGAGATGGTCGATGAGCACTGCCATCGTAATCCCC 662 Query 581 AG-A-TCT---GA-C-CCT---CTTGGAATTGAAGCAAGCAAGTATGAATATTGGTAAAA 630 | | ||| || | | | ||||| |||||||||| |||||||| || |||||| Sbjct 663 TGAAGTCTCCGGATCTGATGACCATGGAAATGAAGCAAGCTGGTATGAATCTTTGTAAAA 722 Query 631 CCATGGATGATCTTGCGTTGATCCACTCTTATGCTGAATCTCTGAATATAAAAACGAAGG 690 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 723 CCATGGATGATCTTGCGTTGATCCACTCTTATGCTGAATCTCTGAATATGAAAACGAAGG 782 Query 691 AAGAGAAAGATGTCTTTGGAGTAGCGTCTCTAGCTGAGGAGCTTAACAGTTTGAGGTTTA 750 |||||||||||||| ||||||||||||||||||| ||||| ||||||||||||| ||||| Sbjct 783 AAGAGAAAGATGTCCTTGGAGTAGCGTCTCTAGCGGAGGAACTTAACAGTTTGAAGTTTA 842 Query 751 ACCCAGCAGGTCCTGATGAAGGAGAGAGGTTCAATACCGAGGATTTACTC-GTGAACCCA 809 | ||||||||||||||| ||| |||||| |||||||||||| |||||| | ||||| ||| Sbjct 843 AACCAGCAGGTCCTGATCAAGTAGAGAGATTCAATACCGAGAATTTAC-CAGTGAATCCA 901 Query 810 CAATGTGAACAGATTAAGATGGTAGTTGAAACCAATGATACAGCTTTTCATAAACAGAGC 869 ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| Sbjct 902 CAATGTGAACAGATTAAGATGGTAGTTGAAACCTATGATACAGCTTTCCATAAACAGAGC 961 Query 870 AAGACCTGCCTGAGAACTGCAGAAATGAGATTGGTTGCTGCAAGAAAAATGGAAGAGGCT 929 || ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 962 AAAACCTGCCCGAGAACTGCAGATATGAGATTGGTTGCTGCAAGAAAAATGGAAGAGGCA 1021 Query 930 GCACGAGCAGCGGAAGCACTTGCGCTTTCTGAAATGACCATATTATCCAGC-GTAAAAAA 988 ||| ||||||||||||||||||||||| ||||||||||||||||||||||| | || ||| Sbjct 1022 GCAAGAGCAGCGGAAGCACTTGCGCTTGCTGAAATGACCATATTATCCAGCAG-AAGAAA 1080 Query 989 CGAAGACACAT-TCTGCTTCCCGGAGCCACCATGTTTTCCATTAACACTTAAAGCACAGA 1047 | ||||| | | |||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 1081 CCAAGACGC-TCTCTGCTTCCCTAAGACACCATGTTTTCCATTAACACTTAAAGCACAGA 1139 Query 1048 TGAACAAAGAATTATCCGCCAATGTCTCAAGAATAGAGATCTTGAGGAAGCTGGAGGAAG 1107 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1140 TGAACAAAGAATTATCCACCAATGTCTCAAGAATAGAGATCTTGAGGAAGCTGGAGGAAG 1199 Query 1108 CTAATGAAGAAGTTAAACAAAGTCAAA-AAGCTTTGG-AGACGGCGTTAAACCGGGTAGA 1165 |||| |||||||||||||||||| ||| |||| |||| || ||||||||||||||||| Sbjct 1200 CTAACGAAGAAGTTAAACAAAGT-AAACAAGCCTTGGAAG-TTGCGTTAAACCGGGTAGA 1257 Query 1166 AGTCGCCAATACGAAGCAACTTGAAGCACAAGATGCGTTTCGGCAGTGGAACATAGAGTC 1225 | |||| | | |||||||||||||||| |||| || ||||||||||||||||||||||| Sbjct 1258 AATCGCTAGTGTGAAGCAACTTGAAGCAGAAGAGGCATTTCGGCAGTGGAACATAGAGTC 1317 Query 1226 ATGGAAAGACCAGAAAGCTGTTGGAGCAAAACGCTCAATGAAAAGAGACAGCTTTCCTCA 1285 |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 1318 ATGGAAAGACCAGAAAGCTGTTGGAGCAAAACGCTCGATGAAAAGAGAAAGCTTTCCTCA 1377 Query 1286 ACGCTCCTTCTTGAGCCATGTGAAGCAGCACGAGCCACTGATCGATCTCCCTGAGCCAAT 1345 ||||| |||||||||||| | || ||||||||||||||||||||||||||||||||||| Sbjct 1378 GCGCTCTTTCTTGAGCCATATCAATCAGCACGAGCCACTGATCGATCTCCCTGAGCCAAT 1437 Query 1346 GCTGAAACGTAACGTCTCAATGGGTAATAATGTTCTTAACCGAAAAGATGAGAAACAGTT 1405 |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| Sbjct 1438 GCTGAAACGTAACGTCTCAATGGGTAAT---GCTCTTAACCGAAAAGATGAGAAACAGTT 1494 Query 1406 GGTCACGCCGAGAATAAAGTTTAGGTTCATACAAAAACATCAAGCTTCCATTGGAGAAAC 1465 |||||||||||| | |||||||||||||||||||| |||||||||||||||| || |||| Sbjct 1495 GGTCACGCCGAGGAGAAAGTTTAGGTTCATACAAACACATCAAGCTTCCATTAGAAAAAC 1554 Query 1466 AGAGTAAGTTAAAAAA---CCCAGCTTTTAAAAACATGTTTTGCACATTTCAATTCCTGt 1522 |||||||| ||||||| |||| | ||| ||||||||||||||||||||| |||||||| Sbjct 1555 AGAGTAAGCTAAAAAAATACCCAACCTTTGAAAACATGTTTTGCACATTTCGATTCCTGT 1614 Query 1523 tttttttttttttttttATTGTTTGATCATTGATAGGTGTTGTTGCTTCTATCTTAAA-C 1581 |||||||| || || |||||||||||||| |||||||||||||| ||| ||| | Sbjct 1615 TTTTTTTTATTCTTG-----GTTTGATCATTGATGGGTGTTGTTGCTTCCATCA-AAAGC 1668 Query 1582 AAACCCCAGATGATTAGAGTGA-ACGTGttttttttttGACTCAAATGTGACGAAAAGAA 1640 ||| | |||||||||||||||| | ||||| |||| |||||||||||||| ||||||| Sbjct 1669 AAAACACAGATGATTAGAGTGAGATGTGTTGTTTT---GACTCAAATGTGACAAAAAGAA 1725 Query 1641 AAACATTATA--AAAAT-TAAAGCTTCTAGT 1668 |||||||||| |||| ||||||||||||| Sbjct 1726 AAACATTATAGTAAAAACTAAAGCTTCTAGT 1756 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 82429294890 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5