BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486071
Length=1299
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56310.1 | Symbols: | Melibiase family protein | chr3:20882... 2146 0.0
> AT3G56310.1 | Symbols: | Melibiase family protein | chr3:20882803-20885915
FORWARD LENGTH=1567
Length=1567
Score = 2146 bits (1162), Expect = 0.0
Identities = 1256/1302 (96%), Gaps = 3/1302 (0%)
Strand=Plus/Plus
Query 1 ATGAAAGATTCAGTCTTGTTCCTCGT--T-GGGCTCTTCTCTTTATCTGTTTTGGTCTCT 57
|||||||||||||||||||||||||| | || |||||||||||||||||||||||||||
Sbjct 102 ATGAAAGATTCAGTCTTGTTCCTCGTCGTAGGCCTCTTCTCTTTATCTGTTTTGGTCTCT 161
Query 58 CAGTCGATCGCAGGGAGAGTCAAAGCTCCATTGTTGCAGAGCAATACTGGTGGTTTAGTA 117
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 162 CAGTCGATCGCAGGGAGAGTCAAAGCTCCATTGTTGCAGAGCAATACTGGTGGATTAGTT 221
Query 118 TTCAGCAAATCCTTCAATTTGATCTATGATACTTCTATGTACGGACGCTTGCAGCTCAAC 177
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 222 TTCAGCAAATCCTTCAATTCGATCTATGATACTTCTATGTACGGACGCTTGCAGCTCAAC 281
Query 178 AATGGCCTTGCTCGAACTCCTCAAATGGGATGGAATAGCTGGAATTTCTTTGCTTGCAAT 237
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 282 AATGGCCTTGCTCGAACTCCACAAATGGGATGGAATAGCTGGAATTTCTTTGCTTGCAAT 341
Query 238 ATCAATGAAACAGTCATAAAGGAAACTGCTGATGCTTTACTTTCATCTGGCTTGGCTGAT 297
||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 342 ATCAATGAAACTGTCATAAAGGAAACTGCTGATGCTTTGGTTTCATCTGGCCTGGCTGAT 401
Query 298 TTAGGATACATACATGTCAATATTGATGATTGTTGGTCCAATTTGTTACGCGATTCAAAG 357
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 402 TTAGGATACATACATGTCAATATTGATGATTGCTGGTCCAATTTGTTACGCGATTCAGAG 461
Query 358 GGTCAATTGGTTCCTCATCCTGAAACCTTCCCATCAGGAATTAAGCTTCTTGCTGATTAT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 462 GGTCAATTGGTTCCTCATCCTGAAACCTTCCCATCAGGAATTAAGCTTCTTGCTGATTAT 521
Query 418 GTTCATTCAAAGGGTCTCAAACTCGGTATATATTCTGATGCTGGCGTTTTCACGTGTAAA 477
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 522 GTTCATTCAAAGGGTCTCAAACTCGGTATATATTCTGATGCTGGCGTTTTCACTTGTGAA 581
Query 478 GTTCGCCCGGGATCCCTTTTCCATGAAGTGGATGATGCTGACATTTTTGCTTCTTGGGGT 537
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 582 GTTCATCCGGGATCCCTTTTCCATGAAGTGGATGATGCAGACATTTTTGCTTCTTGGGGC 641
Query 538 GTGGATTATCTGAAATATGACAACTGTTTCAACCTGGGAGTAAAACCAATCAAAAGATAC 597
||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||
Sbjct 642 GTGGATTATCTGAAATATGACAATTGTTTCAACCTGGGAATAAAACCAATCGAAAGATAC 701
Query 598 CCTCCAATGCGTGATGCTCTAAACGCAACTGGTCGCTCAATCTTCTATTCACTTTGTGAA 657
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 702 CCTCCAATGCGTGATGCTCTAAACGCAACTGGCCGCTCAATCTTCTATTCACTATGTGAA 761
Query 658 TGGGGCGTTGATGATCCAGCCTTGTGGGCAAAAGAAGTTGGAAACAGTTGGCGGACAACC 717
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 762 TGGGGCGTTGATGATCCTGCCTTGTGGGCAAAAGAAGTTGGAAACAGTTGGCGCACAACC 821
Query 718 GATGACATCAATGATACATGGGCAAGTATGACTACAATTGCTGATTTGAATAACAAGTGG 777
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 GATGACATCAACGATACATGGGCAAGTATGACTACAATTGCTGATTTGAATAACAAGTGG 881
Query 778 GCTGCATATGCTGGACCTGGTGGTTGGAATGATCCGGATATGTTGGAAATTGGGAATGGA 837
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 882 GCTGCATATGCTGGACCTGGTGGTTGGAATGATCCGGATATGTTGGAAATAGGGAATGGA 941
Query 838 GGGATGACATACGAGGAGTATCGAGGTCATTTTAGCATTTGGGCTTTGATGAAGGCACCC 897
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 942 GGGATGACATACGAGGAGTATCGAGGTCATTTTAGCATTTGGGCTTTGATGAAGGCACCT 1001
Query 898 CTTTTGATTGGTTGTGATGTAAGAAACATGACCGCTGAAACTTTTGAGATTTTGAGTAAT 957
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1002 CTCTTGATTGGTTGTGATGTAAGAAACATGACCGCTGAAACTTTGGAGATTTTGAGTAAT 1061
Query 958 AAGGAGGTTATAGCTGTAAACCAAGACCCACTTGGTGTTCAAGGAAGGAAAATTCAAGCC 1017
|||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 AAGGAGATTATCGCTGTTAACCAAGACCCACTTGGTGTTCAAGGAAGGAAAATTCAAGCC 1121
Query 1018 AATGGAGAAGATGATTGTCAGCAGGTGTGGTCAGGACCTTTATCTGGTGACCGTATGGTA 1077
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1122 AATGGAGAAAATGATTGTCAGCAGGTGTGGTCAGGACCTTTATCTGGTGACCGTATGGTA 1181
Query 1078 GTTGCTCTCTGGAACCGTTGCTCTGAGCCAGCAATTATTACAGCATCATGGGATATGATC 1137
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1182 GTTGCTCTCTGGAACCGTTGCTCTGAGCCAGCAACTATTACAGCATCATGGGATATGATC 1241
Query 1138 GGTCTTGAATCTACGATTAGCGTCTCAGTAAGAGATTTGTGGCAGCACAAAGATGTAACA 1197
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1242 GGTCTTGAATCTACCATTAGCGTTTCAGTAAGAGATTTGTGGCAGCACAAAGATGTAACA 1301
Query 1198 GAGAACGCGTCAGGCTCCTTTGAAGCTCAAGTAGACGCACATGACTGTCATATGTACGTT 1257
||||| | || |||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1302 GAGAATACTTCTGGCTCCTTTGAAGCTCAAGTTGACGCACACGACTGTCATATGTACGTT 1361
Query 1258 CTCACTCCCCAGACAGTATCACACTCCGATGTATAGTTCTTT 1299
|||||||||||||||||||||||||| |||||||||||||||
Sbjct 1362 CTCACTCCCCAGACAGTATCACACTCTGATGTATAGTTCTTT 1403
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63905293785
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5